Os01g0928000 - Revision history

Xysj2027 at 16:16, 7 May 2017

2017-05-07T16:16:37Z

Xysj2027: /* Function */

2017-05-07T16:16:04Z

‎Function

Xysj2027 at 03:08, 7 May 2017

2017-05-07T03:08:31Z

192.168.72.52 at 05:07, 14 May 2015

2015-05-14T05:07:17Z

Zhangye at 02:27, 12 March 2015

2015-03-12T02:27:03Z

124.16.129.48 at 19:05, 22 July 2012

2012-07-22T19:05:01Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os01g0928000| Description = Similar to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH116) (At..."

2012-06-25T05:20:05Z

Created page with "{{JaponicaGene| GeneName = Os01g0928000| Description = Similar to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH116) (At..."

New page

{{JaponicaGene|
GeneName = Os01g0928000|
Description = Similar to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH116) (AtbHLH116)|
Version = NM_001051807.1 GI:115441984 GeneID:4326959|
Length = 2897 bp|
Definition = Oryza sativa Japonica Group Os01g0928000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
AP = Chromosome 1:42509063..42511959|
CDS = 42509361..42509444,42509571..42509741,42510073..42510300,42511286..42511948|
GCID = <gbrowseImage1>
name=NC_008394:42509063..42511959
source=RiceChromosome01
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008394:42509063..42511959
source=RiceChromosome01
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggacgaggcggaggcggcggcggcggcggcgaagatggacgagctggcgggaggaggaggaggaggcggcggcgactggtcgtacctcgcggcggacgcgctggcggcggcgtcgttcacggcgttcccgttccaccaccaccaccaccaccaccaccgcgacgtgctctcggcgtcgaccccgtcgtcgctgctcctcaacatggacgcggccaccgccgcggccatgttcgacttccaggcggccttcccgtcgtcctccgtcccgccgccgccgcccacgacgacggcggcgctcccgccgttccacgacttcgcctcctccaacccgttcgacgacgcgccgcccccgttcctcgcgccgccggggcagaagctcgggttcctggggccccccggcggcgcgttcggcggcgggatggggtgggacgacgacgacgagatcgagcagagcgtggacgcctcgtccatgggtgtctcggcctcgctggagaatgccgcgcccgtggcggccggaggaggcggcggcggtggcggcggcggtgggaggggcaagaagaaggggatgccggccaagaacctcatggcggagcggcggcgcaggaagaagctcaacgaccgcctctacatgctgcgctccgtggtgcccaagatcagcaagatggacagagcttctatccttggtgatgcaattgagtacttgaaggagctcctgcagaggattaacgatcttcacaatgaacttgagtctgctcctagctcttcgcttactggaccatcatcggctagcttccacccatcaacacccacattgcagacgtttcctggccgcgttaaggaggaactttgcccaacctcatttccaagccctagtggtcaacaagccacggtcgaagttaggatgagggaaggtcatgcagtcaatatccacatgttctgcgcacgcaggcccggcattctgatgtccacattgagggctctcgacagccttggcctcgggatcgagcaggcggtcatcagctgtttcaatgggtttgcaatggatgttttccgcgccgagcaatgcagggatggtcctggactcgggcctgaagaaattaagaccgtgctcctgcactctgctggccttcagaacgcaatgtaa</cdnaseq>|
AA = <aaseq>MDEAEAAAAAAKMDELAGGGGGGGGDWSYLAADALAAASFTAFP FHHHHHHHHRDVLSASTPSSLLLNMDAATAAAMFDFQAAFPSSSVPPPPPTTTAALPP FHDFASSNPFDDAPPPFLAPPGQKLGFLGPPGGAFGGGMGWDDDDEIEQSVDASSMGV SASLENAAPVAAGGGGGGGGGGGRGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPK ISKMDRASILGDAIEYLKELLQRINDLHNELESAPSSSLTGPSSASFHPSTPTLQTFP GRVKEELCPTSFPSPSGQQATVEVRMREGHAVNIHMFCARRPGILMSTLRALDSLGLG IEQAVISCFNGFAMDVFRAEQCRDGPGLGPEEIKTVLLHSAGLQNAM</aaseq>|
DNA = <dnaseqindica>2516..2599#2219..2389#1660..1887#12..674#gcgaggttgccatggacgaggcggaggcggcggcggcggcggcgaagatggacgagctggcgggaggaggaggaggaggcggcggcgactggtcgtacctcgcggcggacgcgctggcggcggcgtcgttcacggcgttcccgttccaccaccaccaccaccaccaccaccgcgacgtgctctcggcgtcgaccccgtcgtcgctgctcctcaacatggacgcggccaccgccgcggccatgttcgacttccaggcggccttcccgtcgtcctccgtcccgccgccgccgcccacgacgacggcggcgctcccgccgttccacgacttcgcctcctccaacccgttcgacgacgcgccgcccccgttcctcgcgccgccggggcagaagctcgggttcctggggccccccggcggcgcgttcggcggcgggatggggtgggacgacgacgacgagatcgagcagagcgtggacgcctcgtccatgggtgtctcggcctcgctggagaatgccgcgcccgtggcggccggaggaggcggcggcggtggcggcggcggtgggaggggcaagaagaaggggatgccggccaagaacctcatggcggagcggcggcgcaggaagaagctcaacgaccgcctctacatgctgcgctccgtggtgcccaagatcagcaaggtgattaatgacctcatttctattttttcactgttcattgctaattatttaattaatcagcagctccagtttctactagactgtatcttattaattaaattaatcagcattttctatttctacttttctaatttcagttttggcaacatgtttcagttcttgagtgatgtatactggtgtaggtcctgtaggagtgtgtttgtcatgatatttgtcactgaaattggttccaattttggtgctgaattcttgaattggctccacttcagatccaaaaaaacatccttttttcattagatctatgtcataccttgtcatgttcacatggtaacatgaggagttcctattcagcttgctggatggttgttttacagttcagttatggtaatttcagttctgaaattatacttcaatgtcttttttctaggactttataatttgtcgtagcttgagattacacatattatggggaactttgattctgatccatggccagatttagtgatgcatgattaacacagtgccatgcacaagatgtagttgaaagtgaccagataccagataactcacaaattcttttcccccttttctttctgttttttttttgtagttcttcgtgttggatgttttgtctttaacttttgttggtttccttgaaaaaagtcgttcactttggaagtttcggcatgcgaagtgcatattcagttctctgcagtcctttcgtgtgaagaacttactactttccttcacagcgatcaagatggttttgaacaataaagaaagacctgatgtactacagttcttgggatattatgacaagttgcagtctaacaattcagcgccatgtacgatgtgccgttttttagtgtagcagtacaaaacaatttatgtcaaagtgttcttaatgccaactatgtctgactcgtttcatgttaatatctatagtttatcatctcattaccagttttcttctcctttgtgacagatggacagagcttctatccttggtgatgcaattgagtacttgaaggagctcctgcagaggattaacgatcttcacaatgaacttgagtctgctcctagctcttcgcttactggaccatcatcggctagcttccacccatcaacacccacattgcagacgtttcctggccgcgttaaggaggaactttgcccaacctcatttccaagccctagtggtcaacaagccacggttagtcaaattttgaccatgattgttaagcctttgcactagtggcaattatgcaattggcccttgatacttatatgcttaagcatgctttagtgctcaagattaacgcacttgggagctactccttttgtttcaaaatataagcaattcttgctatgtatctggacaagaaatgcttatattttggaacggagggaatattacttatttcgcggtacttgcactttgcagtctgcacaagtacttgatcattcaggccttgttgattcatgtagcggtaacaatatggtgtatagcaaccaagtgacattcacctctcttgtttgttcaggtcgaagttaggatgagggaaggtcatgcagtcaatatccacatgttctgcgcacgcaggcccggcattctgatgtccacattgagggctctcgacagccttggcctcgggatcgagcaggcggtcatcagctgtttcaatgggtttgcaatggatgttttccgcgccgaggtttgcattctccacatcataatatttttctcctccagctgagggttttttttcagttgtgttcgatctgatcctaccgttgttgttcactctcttaatgcttgctctgtacttctgttttgccagcaatgcagggatggtcctggactcgggcctgaagaaattaagaccgtgctcctgcactctgctggccttcagaacgcaatgtaatcagcaagtcagaaagcagtcaagaccaatgcactgggatttgatcagtgatcatttgcatcagatgatctggtttatcaaaaagttatagtaagtatggcatatatgctgtttatctaggagaactgatgagatgaggctcgccatctagagacatgtgtgatgatgatgatgtaactgggtttctttctttctgttgtcgtttttttttctgaatgttgtttgtgatgtaataggatctttgtccattgaaaccatgtccattatcatgatgagaatatgaacccagtgtcttttg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001051807.1 RefSeq:Os01g0928000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 1]]
[[Category:Chromosome 1]]

@@ Line 2: / Line 2: @@
 ==Annotated Information==
 ===Gene Symbol===
 *'''''Os01g0928000''''' '''''<=>''''' '''''ICE2, OsICE2, OsbHLH001'''''
@@ Line 16: / Line 17: @@
 ===Evolution===
 *A '''phylogenetic tree''' of '''ICE homologs''' in '''dicots''' and '''monocots''', using ''Arabidopsis'' PIF3 and human c-myc as outgroups, showed that ICE-related genes can be classified into '''monocot and dicot subfamilies''' (Figure 1).

@@ Line 6: / Line 6: @@
 ===Function===
-''OsICE'' '''homologs''' ''OsbHLH001/OsICE2'' and ''OsbHLH002/OsICE1'' function in '''regulating ''OsDREB1B'' and ''OsHsfA3''''' involved in '''cold acclimation''' and '''trehalose synthesis'''<ref name="ref1"/><ref name="ref2"/>.
+* '''''OsICE'''''  '''''OsbHLH001/OsICE2''''' and '''''OsbHLH002/OsICE1''''' function in '''regulating ''OsDREB1B'' and ''OsHsfA3''''' involved in '''cold acclimation''' and '''trehalose synthesis'''<ref name="ref1"/><ref name="ref2"/>.
 '''GO assignment(s):''' GO:0005634, [http://amigo.geneontology.org/amigo/term/GO:0030528 GO:0030528], GO:0045449

@@ Line 2: / Line 2: @@
 ==Annotated Information==
 ===Function===
 ''OsICE'' '''homologs''' ''OsbHLH001/OsICE2'' and ''OsbHLH002/OsICE1'' function in '''regulating ''OsDREB1B'' and ''OsHsfA3''''' involved in '''cold acclimation''' and '''trehalose synthesis'''<ref name="ref1"/><ref name="ref2"/>.

← Older revision		Revision as of 05:07, 14 May 2015
Line 36:		Line 36:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]
−	~~GeneName = Os01g0928000\|~~
−	~~Description = Similar to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH116) (AtbHLH116)\|~~
−	~~Version = NM_001051807.1 GI:115441984 GeneID:4326959\|~~
−	~~Length = 2897 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os01g0928000, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 1\|Chromosome 1]]\|~~
−	~~AP = Chromosome 1:42509063..42511959\|~~
−	~~CDS = 42509361..42509444,42509571..42509741,42510073..42510300,42511286..42511948\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008394:42509063..42511959~~
−	~~source=RiceChromosome01~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008394:42509063..42511959~~
−	~~source=RiceChromosome01~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atggacgaggcggaggcggcggcggcggcggcgaagatggacgagctggcgggaggaggaggaggaggcggcggcgactggtcgtacctcgcggcggacgcgctggcggcggcgtcgttcacggcgttcccgttccaccaccaccaccaccaccaccaccgcgacgtgctctcggcgtcgaccccgtcgtcgctgctcctcaacatggacgcggccaccgccgcggccatgttcgacttccaggcggccttcccgtcgtcctccgtcccgccgccgccgcccacgacgacggcggcgctcccgccgttccacgacttcgcctcctccaacccgttcgacgacgcgccgcccccgttcctcgcgccgccggggcagaagctcgggttcctggggccccccggcggcgcgttcggcggcgggatggggtgggacgacgacgacgagatcgagcagagcgtggacgcctcgtccatgggtgtctcggcctcgctggagaatgccgcgcccgtggcggccggaggaggcggcggcggtggcggcggcggtgggaggggcaagaagaaggggatgccggccaagaacctcatggcggagcggcggcgcaggaagaagctcaacgaccgcctctacatgctgcgctccgtggtgcccaagatcagcaagatggacagagcttctatccttggtgatgcaattgagtacttgaaggagctcctgcagaggattaacgatcttcacaatgaacttgagtctgctcctagctcttcgcttactggaccatcatcggctagcttccacccatcaacacccacattgcagacgtttcctggccgcgttaaggaggaactttgcccaacctcatttccaagccctagtggtcaacaagccacggtcgaagttaggatgagggaaggtcatgcagtcaatatccacatgttctgcgcacgcaggcccggcattctgatgtccacattgagggctctcgacagccttggcctcgggatcgagcaggcggtcatcagctgtttcaatgggtttgcaatggatgttttccgcgccgagcaatgcagggatggtcctggactcgggcctgaagaaattaagaccgtgctcctgcactctgctggccttcagaacgcaatgtaa</cdnaseq>\|
−	AA = <aaseq>MDEAEAAAAAAKMDELAGGGGGGGGDWSYLAADALAAASFTAFP FHHHHHHHHRDVLSASTPSSLLLNMDAATAAAMFDFQAAFPSSSVPPPPPTTTAALPP FHDFASSNPFDDAPPPFLAPPGQKLGFLGPPGGAFGGGMGWDDDDEIEQSVDASSMGV SASLENAAPVAAGGGGGGGGGGGRGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPK ISKMDRASILGDAIEYLKELLQRINDLHNELESAPSSSLTGPSSASFHPSTPTLQTFP GRVKEELCPTSFPSPSGQQATVEVRMREGHAVNIHMFCARRPGILMSTLRALDSLGLG IEQAVISCFNGFAMDVFRAEQCRDGPGLGPEEIKTVLLHSAGLQNAM</aaseq>\|
−	DNA = <dnaseqindica>2516..2599#2219..2389#1660..1887#12..674#gcgaggttgccatggacgaggcggaggcggcggcggcggcggcgaagatggacgagctggcgggaggaggaggaggaggcggcggcgactggtcgtacctcgcggcggacgcgctggcggcggcgtcgttcacggcgttcccgttccaccaccaccaccaccaccaccaccgcgacgtgctctcggcgtcgaccccgtcgtcgctgctcctcaacatggacgcggccaccgccgcggccatgttcgacttccaggcggccttcccgtcgtcctccgtcccgccgccgccgcccacgacgacggcggcgctcccgccgttccacgacttcgcctcctccaacccgttcgacgacgcgccgcccccgttcctcgcgccgccggggcagaagctcgggttcctggggccccccggcggcgcgttcggcggcgggatggggtgggacgacgacgacgagatcgagcagagcgtggacgcctcgtccatgggtgtctcggcctcgctggagaatgccgcgcccgtggcggccggaggaggcggcggcggtggcggcggcggtgggaggggcaagaagaaggggatgccggccaagaacctcatggcggagcggcggcgcaggaagaagctcaacgaccgcctctacatgctgcgctccgtggtgcccaagatcagcaaggtgattaatgacctcatttctattttttcactgttcattgctaattatttaattaatcagcagctccagtttctactagactgtatcttattaattaaattaatcagcattttctatttctacttttctaatttcagttttggcaacatgtttcagttcttgagtgatgtatactggtgtaggtcctgtaggagtgtgtttgtcatgatatttgtcactgaaattggttccaattttggtgctgaattcttgaattggctccacttcagatccaaaaaaacatccttttttcattagatctatgtcataccttgtcatgttcacatggtaacatgaggagttcctattcagcttgctggatggttgttttacagttcagttatggtaatttcagttctgaaattatacttcaatgtcttttttctaggactttataatttgtcgtagcttgagattacacatattatggggaactttgattctgatccatggccagatttagtgatgcatgattaacacagtgccatgcacaagatgtagttgaaagtgaccagataccagataactcacaaattcttttcccccttttctttctgttttttttttgtagttcttcgtgttggatgttttgtctttaacttttgttggtttccttgaaaaaagtcgttcactttggaagtttcggcatgcgaagtgcatattcagttctctgcagtcctttcgtgtgaagaacttactactttccttcacagcgatcaagatggttttgaacaataaagaaagacctgatgtactacagttcttgggatattatgacaagttgcagtctaacaattcagcgccatgtacgatgtgccgttttttagtgtagcagtacaaaacaatttatgtcaaagtgttcttaatgccaactatgtctgactcgtttcatgttaatatctatagtttatcatctcattaccagttttcttctcctttgtgacagatggacagagcttctatccttggtgatgcaattgagtacttgaaggagctcctgcagaggattaacgatcttcacaatgaacttgagtctgctcctagctcttcgcttactggaccatcatcggctagcttccacccatcaacacccacattgcagacgtttcctggccgcgttaaggaggaactttgcccaacctcatttccaagccctagtggtcaacaagccacggttagtcaaattttgaccatgattgttaagcctttgcactagtggcaattatgcaattggcccttgatacttatatgcttaagcatgctttagtgctcaagattaacgcacttgggagctactccttttgtttcaaaatataagcaattcttgctatgtatctggacaagaaatgcttatattttggaacggagggaatattacttatttcgcggtacttgcactttgcagtctgcacaagtacttgatcattcaggccttgttgattcatgtagcggtaacaatatggtgtatagcaaccaagtgacattcacctctcttgtttgttcaggtcgaagttaggatgagggaaggtcatgcagtcaatatccacatgttctgcgcacgcaggcccggcattctgatgtccacattgagggctctcgacagccttggcctcgggatcgagcaggcggtcatcagctgtttcaatgggtttgcaatggatgttttccgcgccgaggtttgcattctccacatcataatatttttctcctccagctgagggttttttttcagttgtgttcgatctgatcctaccgttgttgttcactctcttaatgcttgctctgtacttctgttttgccagcaatgcagggatggtcctggactcgggcctgaagaaattaagaccgtgctcctgcactctgctggccttcagaacgcaatgtaatcagcaagtcagaaagcagtcaagaccaatgcactgggatttgatcagtgatcatttgcatcagatgatctggtttatcaaaaagttatagtaagtatggcatatatgctgtttatctaggagaactgatgagatgaggctcgccatctagagacatgtgtgatgatgatgatgtaactgggtttctttctttctgttgtcgtttttttttctgaatgttgtttgtgatgtaataggatctttgtccattgaaaccatgtccattatcatgatgagaatatgaacccagtgtcttttg</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001051807.1 RefSeq:Os01g0928000]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 1]]~~
−	~~[[Category:~~Chromosome 1]]

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice gene Os01g0928000 was reported as '''''OsICE2''''' in 2011<ref name="ref1"/>, '''''OsbHLH001/OsICE2''''' in 2013<ref name="ref2"/>, respectively.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+''OsICE'' '''homologs''' ''OsbHLH001/OsICE2'' and ''OsbHLH002/OsICE1'' function in '''regulating ''OsDREB1B'' and ''OsHsfA3''''' involved in '''cold acclimation''' and '''trehalose synthesis'''<ref name="ref1"/><ref name="ref2"/>.
 ===Expression===
-Please input expression information here.
+*Chilling stress on rice seedlings induced '''two ICE-related proteins''' with molecular masses of approximately 55 and 40 kDa. These sizes are consistent with those predicted for ''OsICE1'' and ''OsICE2'', respectively. In contrast to the proteins, cold stress had little or no effect on the expression of ''OsICE1'' and ''OsICE2''<ref name="ref1"/>.
 ===Evolution===
-Please input evolution information here.
+[[File: OsICE2 phylogenic1.jpg|right|thumb|250px|'''Figure 1.''' ''Phylogenic tree of ICE (Inducer of CBF Expression) homologs.(from reference <ref name="ref1"/>).'']]
-You can also add sub-section(s) at will.
+*Although ''OsICE1'' and ''OsICE2'' have '''different predicted molecular masses''', they share '''48% similarity''' at the '''amino acid level'''. They also have '''similarities''' of '''39%''' and '''45%''', respectively, to ''Arabidopsis''<ref name="ref1"/>.
 ==Labs working on this gene==
-Please input related labs here.
+*Graduate School of Bioresource and Bioenvironmental Sciences, Kyushu University, Fukuoka 812-8581, Japan
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==

← Older revision		Revision as of 19:05, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os01g0928000\|		GeneName = Os01g0928000\|