Os02g0131800 - Revision history

192.168.72.52 at 06:25, 14 May 2015

2015-05-14T06:25:42Z

Zhangyan: /* Labs working on this gene */

2014-05-18T09:01:24Z

‎Labs working on this gene

Zhangyan: /* References */

2014-05-18T09:01:02Z

‎References

Zhangyan: /* Expression */

2014-05-18T09:00:00Z

‎Expression

Zhangyan: /* References */

2014-05-18T08:49:18Z

‎References

Zhangyan: /* Labs working on this gene */

2014-05-18T08:48:15Z

‎Labs working on this gene

Zhangyan: /* Evolution */

2014-05-18T08:47:09Z

‎Evolution

Zhangyan: /* Expression */

2014-05-18T08:46:27Z

‎Expression

Zhangyan: /* Function */

2014-05-18T08:42:23Z

‎Function

124.16.129.48 at 19:08, 22 July 2012

2012-07-22T19:08:15Z

← Older revision		Revision as of 06:25, 14 May 2015
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	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]
−	~~GeneName = Os02g0131800\|~~
−	~~Description = Similar to Root-specific metal transporter\|~~
−	~~Version = NM_001052329.1 GI:115444028 GeneID:4328200\|~~
−	~~Length = 4069 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os02g0131800, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 2\|Chromosome 2]]\|~~
−	~~AP = Chromosome 2:1658576..1662644\|~~
−	CDS = 1658757..1659089,1659223..1659318,1659430..1659561,1659748..1659852,1660020..1660193<br>,1660283..1660352,1660458..1660639,1660738..1660847,1660948..1661052<br>,1661153..1661231,1662128..1662168,1662283..1662358,1662455..1662589<br>\|
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008395:1658576..1662644~~
−	~~source=RiceChromosome02~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008395:1658576..1662644~~
−	~~source=RiceChromosome02~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atggaagggactggtgagatgagagaggttggacgagaaactctccatggaggtgtggtgcagagtgttagtgagactgatgagtacaaagaaaagactattgacagtgaaaaagatgggcagtttcgggtgcagccaagatggaggaaattcttggctcatgttgggcctggagctctggtggccattggcttcctagatcctagcaacttggaaactgacatgcaagctggagctgacttcaagtatgagcttctgtgggtcatcttagttgggatggtctttgcacttctgatccaaacattagctgccaaccttggagtgaaaacaggaaggcaccttgctgaactgtgcagggaagagtacccgcactatgtcaacattttcttatggatcattgcggagttggcggtgatttctgatgacattcctgaagtgttgggcacagcttttgcgttcaacatattgcttaagattccagtgtgggctggagttattctcacagtgttcagcaccctcttgcttcttggagtacagagatttggggctcggaagctggagttcatcatagcagcattcatgttcactatggcagcttgcttcttcggagagctaagctatttgaggccgtctgcaggagaggtggtcaagggcatgtttgtcccttctctccaagggaaaggcgctgctgccaatgcgatcgcactctttggcgctatcatcacaccatacaacttgttcttgcactctgctctggtcctgtcaaggaagaccccacgatcagacaaaagcatcagagctgcttgcagatacttccttattgagtgtagtcttgcattcatcgtggctttcctcataaatgtttcagtcgttgttgttgctggatccatttgcaatgcgaataatctttctccagctgatgccaacacgtgtggtgacctaactctgcaatccacacctcttttactcaggaatgttttggggagatcaagctcggtggtgtatgctgttgcgctgctagcttctgggcaaagcaccactatcagttgcacgttcgctgggcaggtcatcatgcaggggtttctggacatgaagatgaagaattgggtaaggaacctcatcacccgagtcatcgccatagctcctagcctcatcgtctccattgtcagtggtccctcaggcgccggcaagctaatcatcctgtcatcaatgatcctgtcatttgagctgccgttcgctctcatccctctactcaagttctgcaacagcagcaagaaagttggacccctcaaggaatccatctatacggtggtgatcgcgtggatcctgagcttcgcgctcatcgtcgtcaacacctacttcctagtgtggacatacgtggactggctcgtccacaacaacctccccaagtatgccaatggcctcatctccgtggtggtgttcgcgctcatggccgcctacctggtcgccgtcgtctacctgacgttcaggaaggacacggtggcgacgtacgtgccggtgccggagcgggcgcaggcgcaggtggaggccggcgggacgccggtggtggacgcctccgccgccgacgaggaccagccggctccgtacaggaaggaccttgccgatgcttccatgtag</cdnaseq>\|
−	AA = <aaseq>MEGTGEMREVGRETLHGGVVQSVSETDEYKEKTIDSEKDGQFRV QPRWRKFLAHVGPGALVAIGFLDPSNLETDMQAGADFKYELLWVILVGMVFALLIQTL AANLGVKTGRHLAELCREEYPHYVNIFLWIIAELAVISDDIPEVLGTAFAFNILLKIP VWAGVILTVFSTLLLLGVQRFGARKLEFIIAAFMFTMAACFFGELSYLRPSAGEVVKG MFVPSLQGKGAAANAIALFGAIITPYNLFLHSALVLSRKTPRSDKSIRAACRYFLIEC SLAFIVAFLINVSVVVVAGSICNANNLSPADANTCGDLTLQSTPLLLRNVLGRSSSVV YAVALLASGQSTTISCTFAGQVIMQGFLDMKMKNWVRNLITRVIAIAPSLIVSIVSGP SGAGKLIILSSMILSFELPFALIPLLKFCNSSKKVGPLKESIYTVVIAWILSFALIVV NTYFLVWTYVDWLVHNNLPKYANGLISVVVFALMAAYLVAVVYLTFRKDTVATYVPVP ERAQAQVEAGGTPVVDASAADEDQPAPYRKDLADASM</aaseq>\|
−	DNA = <dnaseqindica>3556..3888#3327..3422#3084..3215#2793..2897#2452..2625#2293..2362#2006..2187#1798..1907#1593..1697#1414..1492#477..517#287..362#56..190#gagcaagacatactttttcatatcttccagacaaggtgcattagcaacatagaatatggaagggactggtgagatgagagaggttggacgagaaactctccatggaggtgtggtgcagagtgttagtgagactgatgagtacaaagaaaagactattgacagtgaaaaagatgggcagtttcgggtgcaggtaagcgactacattttgcgcattcatggagttctaatgccacaataagctagtgcttgtttcaatcctatgcttactttttgctgggtggaacagccaagatggaggaaattcttggctcatgttgggcctggagctctggtggccattggcttcctagatcctagcaactgtaagctcctatcttttgcctagagcttcatattgttttgatacgctcattaagaaaaaaagaaaaagaagaggttgaggtggtatagcttttttctgaaacatgatttgacagtggaaactgacatgcaagctggagctgacttcaagtatgaggtacactgcatagttcttgcctcttcgtcttggatctgaactacttttacgaactaattaaccatgtgtcatagatttttgcctgcgcatggaaagggtgaatgtaaccaaggttaatcaaataaagacctggtgaaaggctcccaatcttggaataaatgattgaaagactatcttggaaccatttattagttggaaaattgcctggtttggcctttgaaaattgttaactattacaaagaacctacttagtataagcgtcaggaaaacacttatttgggcatcaaatctgaacaaaacagactcttaaacattttagaggtattcctggatgttttgacttgaaatatctttaaaattccaaatataaataatattttgagattttcttgcactgatttcatagctgaacaagaagaattctaaaccttccactgagggtgtggcctttacagaatattgaaatatgtttccttaaaggcctaaataatcaaagtttaaacttaagtctatcctaaggactgtaccaaaaggactccccgttaactagcataagcaacaatgtcttatttgaagaaagaaaattggattattttggggagtacacatataagaacgttggaatatcaatcattgacttgagatgactctatcatgacatgaaccttatatatatgatataatagtagcagtagtacacgaaatcaaacaaagtctcccatgcctagtaaatggtggtcaataatttgtttctttcctaatatttaaagaagacaaattcaatcaagaaacagaaaagtaggagaaaaacaaaattaactatttcgtttttcctgcctcctctttatataaaatgcttcttctggtaacatcaatttacattttacaatgaacagcttctgtgggtcatcttagttgggatggtctttgcacttctgatccaaacattagctgccaaccttggagtgaaaacaggtatatttcacttaaccattaaccttgctctttgcatgctaatcatgcatcatcaccttatcatcttatgttgtccatgcttttgttgagttctgtacaggaaggcaccttgctgaactgtgcagggaagagtacccgcactatgtcaacattttcttatggatcattgcggagttggcggtgatttctgatgacattcctgaaggttgatcgatgttttatttatttatttatttatttatttatttatttatttatttctgtgctagatttagcatgagtaacacgttcttttgttagtgcagtgttgggcacagcttttgcgttcaacatattgcttaagattccagtgtgggctggagttattctcacagtgttcagcaccctcttgcttcttggagtacagagatttggggtgcgcaaagaatttctcagacttatatgattgtcagatgaattacactgagaatgggctactgacgaattgaccttaccatatgacatgtccaccaggctcggaagctggagttcatcatagcagcattcatgttcactatggcagcttgcttcttcggagagctaagctatttgaggccgtctgcaggagaggtggtcaagggcatgtttgtcccttctctccaagggaaaggcgctgctgccaatgcgatcgcactctttggcgctatcatcacaccgtaagaaacccaatcagttatcagggctttggtgatcgtagctactttttacttgatccatggtacaagttcatgagatgaggagttttcataacatgcatgcagatacaacttgttcttgcactctgctctggtcctgtcaaggaagaccccacgatcagacaaaagcatcagagtaggttgcattgataatagatgatgtaatgatcagctatggtttgttgttgagtggctaatggtttgaccctatcttgtttccgataggctgcttgcagatacttccttattgagtgtagtcttgcattcatcgtggctttcctcataaatgtttcagtcgttgttgttgctggatccatttgcaatgcgaataatctttctccagctgatgccaacacgtgtggtgacctaactctgcaatccacacctcttttactcagggtaagaactgttcgaatgttcatttcctggataaaagatagtactttcagaagcatcttatagacatcttgttctgtaatatggaagaaattacagaccagagctcactgaggatcatgtcagacattctgaattcaagccttattttgattatctcttactttcagaatgttttggggagatcaagctcggtggtgtatgctgttgcgctgctagcttctgggcaaagcaccactatcagttgcacgttcgctgggcaggtcatcatgcaggtaattcagttccgtagtgctcacccttgatagtaaacctggagcagggtttgtcaagtttacactattgatcgaggtgttatcaagtttgtacaaactatttgataccttgcatatcatttgtccactcttgagtattatctatttcagtaaatatagccaacttttgttatgataattatccaggggtttctggacatgaagatgaagaattgggtaaggaacctcatcacccgagtcatcgccatagctcctagcctcatcgtctccattgtcagtggtccctcaggcgccggcaagctaatcatcctgtcatcagtaagactcatcaacctgttttcagctttatttttccaattgaacattctgtaggaattcgctttgctcctccaaaagcaacaatatcctgaattcttgatttggatacagatgatcctgtcatttgagctgccgttcgctctcatccctctactcaagttctgcaacagcagcaagaaagttggacccctcaaggaatccatctatgtaagcttccttaaaccatttctccaaccaaaaaacattcacattcacccacccacacaaacacaaacacgaaaaccgattaattcgccatgctagatacataaattggcaaatgatccaataatttttgcagacggtggtgatcgcgtggatcctgagcttcgcgctcatcgtcgtcaacacctacttcctagtgtggacatacgtggactggctcgtccacaacaacctccccaagtatgccaatggcctcatctccgtggtggtgttcgcgctcatggccgcctacctggtcgccgtcgtctacctgacgttcaggaaggacacggtggcgacgtacgtgccggtgccggagcgggcgcaggcgcaggtggaggccggcgggacgccggtggtggacgcctccgccgccgacgaggaccagccggctccgtacaggaaggaccttgccgatgcttccatgtagccttgataaattattgcttgctgagtagtgcattagttattcctcgtcgtcagtgtataactagatgtgttctctggatgatataatgtgattcgtcattgattttttgttcttcttcttgttgttgtttctaagcagcttagctgtaaattaagtttgagaaaaaaaagtgtgcactact</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052329.1 RefSeq:Os02g0131800]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 2]]~~
−	~~[[Category:~~Chromosome 2]]

@@ Line 13: / Line 13: @@
 ==Labs working on this gene==
 .Thompson Institute for Plant Research, Cornell University, Ithaca.
 .Robert W. Holley Center for Agriculture and Health, Agricultural Research Service, US Department of Agriculture, Cornell University, Ithaca.
 .Institute of Crop and Nuclear Technology Utilization, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.
 .Department of Plant Breeding, Cornell University, Ithaca.
 .Institute for Plant Science and Resources, Okayama University, Japan.

@@ Line 20: / Line 20: @@
 ==References==
 .Jian-Yong Li, Jiping Liu, Dekun Dong, Xiaomin Jia, Susan R. Mc Couch, and Leon V. Kochian, Natural variation underlies alterations in Nramp aluminum transporter (NRAT1) expression and function that play a key role in rice aluminum tolerance, PNAS, April 29, 2014.
 .Jixing Xia, Naoki Yamaji, Tomonari Kasai, and Jian Feng Ma, Plasma membrane-localized transporter for aluminum in rice, PNAS, October 26, 2010.
 .Xia J, Yamaji N, Ma JF, Further characterization of an aluminum influx transporter in rice. Plant Signaling & Behavior, January 2011.
 .Xia J, Yamaji N, Che J, Shen RF, Ma JF, Differential expression of Nrat1 is responsible for Al-tolerance QTL on chromosome 2 in rice, J Exp Bot. May 12,2014.
 .Famoso AN, Zhao K, Clark RT, Tung CW, Wright MH, Bustamante C, Kochian LV, McCouch SR, Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping, Aug 2011.

@@ Line 6: / Line 6: @@
 ===Expression===
-The Nramp aluminum transporter (NRAT1) gene encoding a root plasma membrane Al uptake transporter previously hypothesized to underlie a unique Al tolerance mechanism. And the expression of this gene is depend on the knowledge of several parts below:
+The Nramp aluminum transporter (NRAT1) gene encoding a root plasma membrane Al uptake transporter previously hypothesized to underlie a unique Al tolerance mechanism. The research have found that genotypes of the 24 diverse lines assayed by sequencing a 3.7-kb region, including the 2.1-kb promoter region (M1 to M7) and a 1,638-bp coding sequence (M8 to M15). Fifteen natural mutation sites were identified (M1 to M15) based on comparison of the Nipponbare NRAT1 sequence, including 14 SNPs and one 7-bp insertion (M7). A total of five haplotypes were identified among the 24 diverse rice lines. Mutation sites marked with a red rectangle result in amino acid alterations. Also shown in the column labeled TRG-RRG is the Al tolerance for each group, based on the RRG of the total root system (TRG, total root growth).Jian-Yong Li et al. have cloned several lines of this gene into a yeast expression vector and transformed into yeast cells. And they investigated whether the altered amino acid sequences in NRAT1 affect its ability to transport Al.
 ===Evolution===

@@ Line 22: / Line 22: @@
 ==References==
-Please input cited references here.
+.Jian-Yong Li, Jiping Liu, Dekun Dong, Xiaomin Jia, Susan R. Mc Couch, and Leon V. Kochian, Natural variation underlies alterations in Nramp aluminum transporter (NRAT1) expression and function that play a key role in rice aluminum tolerance, PNAS, April 29, 2014.
 ==Structured Information==

@@ Line 12: / Line 12: @@
 ===Evolution===
-Please input evolution information here.
+Conserved Domains from CDD found in protein sequences by rpsblast searching.
 ==Labs working on this gene==

@@ Line 3: / Line 3: @@
 ==Annotated Information==
 ===Function===
-Please input function information here.
+This gene is called Nramp(natural resistance-associated macrophage protein) aluminum transporter 1, which is a member of Nramp family and it is a plasma membrane-localized aluminum transporter recently identified in rice. We all known that the Aluminum (Al) is the most abundant metal in the Earth's crust, but its trivalent ionic form is highly toxic to all organisms at low concentrations. While the rice has the most Al-tolerant cereal crop and the researcher has found that the tolerant of aluminum is concerned with this gene. When expressed in yeast, Nrat1 transports trivalent Al ion, but not other divalent ions, such as manganese, iron, and cadmium, or the Al–citrate complex. Nrat1 is localized at the plasma membranes of all cells of root tips except epidermal cells. Knockout of Nrat1 resulted in decreased Al uptake, increased Al binding to cell wall, and enhanced Al sensitivity, but did not affect the tolerance to other metals. Expression of Nrat1 is up-regulated by Al in the roots and regulated by a C2H2 zinc finger transcription factor (ART1). We therefore concluded that Nrat1 is a plasma membrane-localized transporter for trivalent Al, which is required for a prior step of final Al detoxification through sequestration of Al into vacuoles.
 ===Expression===

← Older revision		Revision as of 19:08, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os02g0131800\|		GeneName = Os02g0131800\|