Os02g0170300 - Revision history

Xysj2012: /* Structured Information */

2015-05-14T05:23:14Z

‎Structured Information

QinglanCui: Undo revision 175307 by QinglanCui (talk)

2014-06-01T04:54:41Z

Undo revision 175307 by QinglanCui (talk)

QinglanCui at 04:49, 1 June 2014

2014-06-01T04:49:42Z

HamletShaoE at 13:31, 25 May 2014

2014-05-25T13:31:09Z

Xysj2012 at 04:30, 22 March 2013

2013-03-22T04:30:06Z

Xysj2012: /* Labs working on this gene */

2013-03-18T12:15:40Z

‎Labs working on this gene

Xysj2012: /* Evolution */

2013-03-18T12:14:38Z

‎Evolution

Xysj2012: /* Evolution */

2013-03-18T03:43:01Z

‎Evolution

Xysj2012: /* Knowledge Extension */

2013-03-18T03:42:17Z

‎Knowledge Extension

Xysj2012: /* Knowledge Extension */

2013-03-18T03:39:44Z

‎Knowledge Extension

@@ Line 46: / Line 46: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]

@@ Line 75: / Line 75: @@
 AA = <aaseq>MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVG                     VVIFSSTGKMFEYCSPTCSLRELIEHYQTVTNTHFEEINHDQQIFVEMTRMRNEMEKL                     DGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILED                     QNSFLCRMINENHHQAAVGGGDVKAMVEMAPVLSMLTAAPAYYGEESSSTALQLTPPL                     HAVDAAAAAGFRLQPTQPNLQDPGCSSSSFHAAAAGHGLQLW</aaseq>|
 DNA = <dnaseqindica>3059..3337#2890..2931#2740..2781#2078..2239#1871..1940#427..614#agcctttgaagcaagcttagcacttcacaaggtatgtacatagcacattactactcctgccctatctatctaccctgttcatgagtaattcaagaaaaaaaaaaggacaccttttctagctagttcttcatcctttcgcagcaaagagtttttacatctctagctactagttgttctcttctctacatgaaattttttctacttctgattgcaccctttacatagctgtggggggaaatccaatttgagcacccatgccttatgttgattttaacaaaattcgtccatgtatcgatatgttcataacttggccatttctgttcttcttcttcttcttcttcttcttcagtttcctcttgtgcagaagaaggagaaacaaaagaacacagaaattaaattaaactcgatcaggaaggtatagcaggcatggggcgcggcaagatcgagatcaagaggatcgagaacgcgacgaacaggcaggtgacattctcgaagaggcggggagggctactgaagaaggcgaacgagctcgccgtgctctgcgacgcccgcgtcggcgtcgtcatcttctccagcaccggcaagatgttcgagtactgcagccctacctgcaggtacggttcttgttttgttctcttatattatcagatgctgttcaatctttcctttctccagcttagtgtctcttgttctctttttagtgcttgatttgatgggttaattaatttcttgttttttgtcaaccaagagattaagttttcggctaagtttctctcggcctttattttgtttttcagagaaaattaactaactcatgcagtttctaccctttgttttctttgggcaagagtgtttaattatgatcatttgatctgttcatataatggatggatgccttgcatttattcttcatctgaactatttttcttgtcctgaactcctgatcgatcgagtttttcctaccttcattttaactattttcagtgtatatgtatgcatctgcagtttcctttgatatattttcgaagagccaagaatctattacaaaattaaatcatgatcaaaggcatacataagcaatgatctatatgccctagtgtctcttgtgacttgattacgcacttgtcttttacatctctgagcaacatatatgtatgtagatttgcaacttgatcctgaatttatagtcaactagttaattaatccttatttccctctttctaatgatttctaggatcgagctgggttttttaggtggatttccccaaaaaactatttcatatgtggctaatttaatcaaactaaaagatgtatatcaacagggaatataatttgaacaagtgtacgacagtacgaccatatcttatcttatgttatgcatgtttttatacttaaaaaaagatgcgaatataagagaatgacctaatattaaataattagaagaggtgaggtttcgaaccttggttgtctagtccaccactttgtggagctagccggaagatccccagacgtttctcacatgattttatactgttctgcagcatattatagttaattaatatgtgaatattcatgtgaagttctttcttccgatcccctgttcattcctgttattagttaagaaattttcgtttgtttcattttgatctaaaataatatactctctgtaagtatatacatcaccaagagaaaattctagctacaaaattaatttataccatctgatttgtacatcagagattgtcatttcttttttgaatgcgcaaaagaattacacatgcaccattccaattagatacatgaacttatcaaagtattaattaactcacaactaatcaaggtacttgtttcaatgtttgacaatatatagtttgagggaactcatcgagcattaccagaccgtcaccaacactcatttcgaggagatcaaccacgatcaggtatacattaattttacaatcagcaacacaatgtctgatcaatatcagaatatatatcgatctatctgccagcagttgaaatgaaattttctttcaaatgcactgatcaaatataattaatgtgcacatatatatagcaaatatttgtggagatgactcggatgaggaacgagatggagaagctggacggtggcatcaggaggttcaccggcgacgacctctccaacctcacgctcgccgacatcaacgatctcgagcagcagctcgaattctccgtcaccaaagtccgtgcgagaaaggtaattacttcctccatatcatattataagtcgttttaattttttttacaaatttatttaagtttaatcaagtttataaaaaatatattagtatttcaaaaacaaacattatcaaaatgtattcagtgatagatttaataaaattaatttggtattacatgtgttgctatttttttctataaatttaatcaaacttaaaagaaaaaaaattaaaatgacttgtaatatgaaatagagctagtaattgattaagaagatagtatttgatgaatgaatcattcttcagagttaatttagaatgatcagtctctgattcaatggtaaatggtaagtttagggtttagggattaattgatcccatagttttttcctcttttctgtaaagctttgctttcgtaagttttttattttgttatattcaatgaaataggtgtatctaagtgccgattcgttaaaaaaataaaaaatagttgtttcacattaattcttgcttgttgcagcatcagctcctgaaccagcagctggacaaccttcgtcgcaaggtaattaatttgcactactaaactgatcatgaaacaccaaatactttgctgtatgatgatgaaaaaaaaaatgattgattcaattctatgcatgaaattgatgaacaggagcacatcctggaagaccagaacagcttcctgtgccgcatggtatacgtatagttagttaatcagtaatcaagaattcattaaaatgttttgattcttgaagcacatatatgtacattaattatggtgtttggttgattcttgtacatgaaactatatatgaattcagatcaacgagaaccatcatcaggcggcggtgggcggcggcgacgtgaaggcgatggtggagatggcgccggtgctgtcgatgctgacggcggcgccggcgtactacggcgaggagtcgtcgagcaccgcgctgcagctcaccccgccgctgcacgccgtcgacgccgccgccgccgccgggttccggctgcagccgacgcagcccaacctgcaggaccccggctgcagcagcagcagcttccatgccgccgccgccggccacggcctgcagctgtggtaagaacaaacgaagcaaagcatacatggcacatcctgatactctcatcaggtgtgtgatgtgaatatatatatcgcaatgattttatctactagtttatgtacttcatccgttttataatataagtcattctagtatttttcatattcatattgatattaatgaatacatatatatatcaatataaatgtaggaaatgctagaataacttacattgtgaaacggagggagtataattcatcgcaacacagctgcgaattaatcatgcattgatatcattctgcagagatctagatgattgcttgctaattaagcacatgatggcattgtcgattctgggagctaggagtaacttggagaccatgaagatgcatgatcagctgatgatagacgatcgagttgggttgctgtgttgttcaattgttcatcgttctggacatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctaattagcacatcagaataatcaagcttttctacctagttaactagtacagctgctaagtaccttttgatttgttggtgtgtgaactactgaactggagttggatattaaggtctccatgcatttgcatggttaattagcagagagatcattgaggtttttaggatgtaac</dnaseqindica>|
-Link = [http://www.ncbi.nlm.nih.gov/nuccore/297612483?report=genbank&from=24059505&to=24073777]|
+Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052563.1 RefSeq:Os02g0170300]|
 }}
 [[Category:Genes]]
@@ Line 81: / Line 81: @@
 [[Category:Oryza Sativa Japonica Group]]
 [[Category:Japonica Genes]]
-[[Category:Japonica Chromosome 11]]
+[[Category:Japonica Chromosome 2]]
-[[Category:Chromosome 11]]
+[[Category:Chromosome 2]]

@@ Line 75: / Line 75: @@
 AA = <aaseq>MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVG                     VVIFSSTGKMFEYCSPTCSLRELIEHYQTVTNTHFEEINHDQQIFVEMTRMRNEMEKL                     DGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILED                     QNSFLCRMINENHHQAAVGGGDVKAMVEMAPVLSMLTAAPAYYGEESSSTALQLTPPL                     HAVDAAAAAGFRLQPTQPNLQDPGCSSSSFHAAAAGHGLQLW</aaseq>|
 DNA = <dnaseqindica>3059..3337#2890..2931#2740..2781#2078..2239#1871..1940#427..614#agcctttgaagcaagcttagcacttcacaaggtatgtacatagcacattactactcctgccctatctatctaccctgttcatgagtaattcaagaaaaaaaaaaggacaccttttctagctagttcttcatcctttcgcagcaaagagtttttacatctctagctactagttgttctcttctctacatgaaattttttctacttctgattgcaccctttacatagctgtggggggaaatccaatttgagcacccatgccttatgttgattttaacaaaattcgtccatgtatcgatatgttcataacttggccatttctgttcttcttcttcttcttcttcttcttcagtttcctcttgtgcagaagaaggagaaacaaaagaacacagaaattaaattaaactcgatcaggaaggtatagcaggcatggggcgcggcaagatcgagatcaagaggatcgagaacgcgacgaacaggcaggtgacattctcgaagaggcggggagggctactgaagaaggcgaacgagctcgccgtgctctgcgacgcccgcgtcggcgtcgtcatcttctccagcaccggcaagatgttcgagtactgcagccctacctgcaggtacggttcttgttttgttctcttatattatcagatgctgttcaatctttcctttctccagcttagtgtctcttgttctctttttagtgcttgatttgatgggttaattaatttcttgttttttgtcaaccaagagattaagttttcggctaagtttctctcggcctttattttgtttttcagagaaaattaactaactcatgcagtttctaccctttgttttctttgggcaagagtgtttaattatgatcatttgatctgttcatataatggatggatgccttgcatttattcttcatctgaactatttttcttgtcctgaactcctgatcgatcgagtttttcctaccttcattttaactattttcagtgtatatgtatgcatctgcagtttcctttgatatattttcgaagagccaagaatctattacaaaattaaatcatgatcaaaggcatacataagcaatgatctatatgccctagtgtctcttgtgacttgattacgcacttgtcttttacatctctgagcaacatatatgtatgtagatttgcaacttgatcctgaatttatagtcaactagttaattaatccttatttccctctttctaatgatttctaggatcgagctgggttttttaggtggatttccccaaaaaactatttcatatgtggctaatttaatcaaactaaaagatgtatatcaacagggaatataatttgaacaagtgtacgacagtacgaccatatcttatcttatgttatgcatgtttttatacttaaaaaaagatgcgaatataagagaatgacctaatattaaataattagaagaggtgaggtttcgaaccttggttgtctagtccaccactttgtggagctagccggaagatccccagacgtttctcacatgattttatactgttctgcagcatattatagttaattaatatgtgaatattcatgtgaagttctttcttccgatcccctgttcattcctgttattagttaagaaattttcgtttgtttcattttgatctaaaataatatactctctgtaagtatatacatcaccaagagaaaattctagctacaaaattaatttataccatctgatttgtacatcagagattgtcatttcttttttgaatgcgcaaaagaattacacatgcaccattccaattagatacatgaacttatcaaagtattaattaactcacaactaatcaaggtacttgtttcaatgtttgacaatatatagtttgagggaactcatcgagcattaccagaccgtcaccaacactcatttcgaggagatcaaccacgatcaggtatacattaattttacaatcagcaacacaatgtctgatcaatatcagaatatatatcgatctatctgccagcagttgaaatgaaattttctttcaaatgcactgatcaaatataattaatgtgcacatatatatagcaaatatttgtggagatgactcggatgaggaacgagatggagaagctggacggtggcatcaggaggttcaccggcgacgacctctccaacctcacgctcgccgacatcaacgatctcgagcagcagctcgaattctccgtcaccaaagtccgtgcgagaaaggtaattacttcctccatatcatattataagtcgttttaattttttttacaaatttatttaagtttaatcaagtttataaaaaatatattagtatttcaaaaacaaacattatcaaaatgtattcagtgatagatttaataaaattaatttggtattacatgtgttgctatttttttctataaatttaatcaaacttaaaagaaaaaaaattaaaatgacttgtaatatgaaatagagctagtaattgattaagaagatagtatttgatgaatgaatcattcttcagagttaatttagaatgatcagtctctgattcaatggtaaatggtaagtttagggtttagggattaattgatcccatagttttttcctcttttctgtaaagctttgctttcgtaagttttttattttgttatattcaatgaaataggtgtatctaagtgccgattcgttaaaaaaataaaaaatagttgtttcacattaattcttgcttgttgcagcatcagctcctgaaccagcagctggacaaccttcgtcgcaaggtaattaatttgcactactaaactgatcatgaaacaccaaatactttgctgtatgatgatgaaaaaaaaaatgattgattcaattctatgcatgaaattgatgaacaggagcacatcctggaagaccagaacagcttcctgtgccgcatggtatacgtatagttagttaatcagtaatcaagaattcattaaaatgttttgattcttgaagcacatatatgtacattaattatggtgtttggttgattcttgtacatgaaactatatatgaattcagatcaacgagaaccatcatcaggcggcggtgggcggcggcgacgtgaaggcgatggtggagatggcgccggtgctgtcgatgctgacggcggcgccggcgtactacggcgaggagtcgtcgagcaccgcgctgcagctcaccccgccgctgcacgccgtcgacgccgccgccgccgccgggttccggctgcagccgacgcagcccaacctgcaggaccccggctgcagcagcagcagcttccatgccgccgccgccggccacggcctgcagctgtggtaagaacaaacgaagcaaagcatacatggcacatcctgatactctcatcaggtgtgtgatgtgaatatatatatcgcaatgattttatctactagtttatgtacttcatccgttttataatataagtcattctagtatttttcatattcatattgatattaatgaatacatatatatatcaatataaatgtaggaaatgctagaataacttacattgtgaaacggagggagtataattcatcgcaacacagctgcgaattaatcatgcattgatatcattctgcagagatctagatgattgcttgctaattaagcacatgatggcattgtcgattctgggagctaggagtaacttggagaccatgaagatgcatgatcagctgatgatagacgatcgagttgggttgctgtgttgttcaattgttcatcgttctggacatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctaattagcacatcagaataatcaagcttttctacctagttaactagtacagctgctaagtaccttttgatttgttggtgtgtgaactactgaactggagttggatattaaggtctccatgcatttgcatggttaattagcagagagatcattgaggtttttaggatgtaac</dnaseqindica>|
-Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052563.1 RefSeq:Os02g0170300]|
+Link = [http://www.ncbi.nlm.nih.gov/nuccore/297612483?report=genbank&from=24059505&to=24073777]|
 }}
 [[Category:Genes]]
@@ Line 81: / Line 81: @@
 [[Category:Oryza Sativa Japonica Group]]
 [[Category:Japonica Genes]]
-[[Category:Japonica Chromosome 2]]
+[[Category:Japonica Chromosome 11]]
-[[Category:Chromosome 2]]
+[[Category:Chromosome 11]]

@@ Line 8: / Line 8: @@
 After rice fertilization, the increased [http://en.wikipedia.org/wiki/Indole-3-acetic_acid IAA] content induces the expression of ''MADS29'', which then stimulates the degradation of the nucellus and the nucellar projection by directly stimulating a Cys protease and NBS-LRR proteins. Acting through ''MADS29'' or other pathways, auxin regulates the [http://en.wikipedia.org/wiki/Programmed_cell_death PCD]processes required for normal endosperm development and grain filling<ref name="ref1" />.
-'''GO assignment(s):''' GO:0003700, GO:0005634, GO:0043565
+'''GO assignment(s):''' [http://amigo.geneontology.org/amigo/term/GO:0003700 GO:0003700], [http://amigo.geneontology.org/amigo/term/GO:0005634 GO:0005634], [http://amigo.geneontology.org/amigo/term/GO:0043565 GO:0043565]
 ===Mutation===

← Older revision		Revision as of 04:30, 22 March 2013
Line 1:		Line 1:
−	The rice ''OsMADS29'' is a member of MADS-box transcription factors in rice, it belongs to class B genes of the [http://en.wikipedia.org/wiki/ABC_model ABC model of flower development] in plants<ref name="ref1" /><ref name="ref5" />.	+	The rice '''''OsMADS29''''' is a member of MADS-box transcription factors in rice, it belongs to class B genes of the [http://en.wikipedia.org/wiki/ABC_model ABC model of flower development] in plants<ref name="ref1" /><ref name="ref5" />.

	==Annotated Information==		==Annotated Information==

@@ Line 27: / Line 27: @@
 ==Labs working on this gene==
-.Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, Peoples Republic of China,<br>
+*Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, Peoples Republic of China,<br>
-.Department of Genetics, Friedrich Schiller University Jena, Jena, Germany<br>
+*Department of Genetics, Friedrich Schiller University Jena, Jena, Germany<br>
-.Plant Evo-Devo Group, The Institute of Botany, Justus-Liebig-University Gießen, Gießen, Germany<br>
+*Plant Evo-Devo Group, The Institute of Botany, Justus-Liebig-University Gießen, Gießen, Germany<br>
-.National Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
+*National Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
 ==References==

@@ Line 20: / Line 20: @@
 ===Evolution===
-The phylogenetic analyses made by A. Becker et, reavels that B(sister) genes are the sister clade of the DEF/GLO-like (or AP3/PI-like) genes comprising class B floral organ identity genes <ref name="ref3" />.
+The phylogenetic analyses made by A. Becker ''et al.'' reavels that B(sister) genes are the sister clade of the DEF/GLO-like (or AP3/PI-like) genes comprising class B floral organ identity genes <ref name="ref3" />.
-The phylogeny analyses made by Xuelian Yang et, shows that B(sister) genes of core eudicots and monocots constitute two different clades, suggesting that the most recent common ancestor of both taxa contained one B(sister) gene only. The clade of rice B(sister) genes is divided into three subclades, termed the '''''OsMADS29''''', [[Os06g0667200|'''''OsMADS30''''']] and [[Os04g0614100|'''''OsMADS31''''']] subclade<ref name="ref2" />.
+The phylogeny analyses made by Xuelian Yang ''et al.'' shows that B(sister) genes of core eudicots and monocots constitute two different clades, suggesting that the most recent common ancestor of both taxa contained one B(sister) gene only. The clade of rice B(sister) genes is divided into three subclades, termed the '''''OsMADS29''''', [[Os06g0667200|'''''OsMADS30''''']] and [[Os04g0614100|'''''OsMADS31''''']] subclade<ref name="ref2" />.
 ===Knowledge Extension===

@@ Line 24: / Line 24: @@
 ===Knowledge Extension===
-During flower development in higher plants, the identity of the different floral organs isspecified by different classes of homeotic selector genes, termed class A, B, C, D and E genes, with A specifying sepals, A+B+E petals, B+C+E stamens (malemicrosporophylls), C+E carpels (female megasporo-phylls), and D ovules<ref name="ref3" /><ref name="ref4" />. The genes provid-ing the different floral homeotic functions have beencloned from several plant species<ref name="ref3" />. Nearly all of thembelong to the family of MADS-box genes, which encode transcription factors. Almost all known MADS-domainproteins from vascular plants share a conserved struc-tural organization, the so-called MIKC-type domainstructure, including MADS (M), intervening (I), keratin-like (K) and C-terminal (C) domains<ref name="ref3" /><ref name="ref4" /><ref name="ref5" />. Genes closely related to class B MADS-box genes have been identified by phylogenetic studies, and are referred to as B(sister genes)<ref name="ref3" />.
+During flower development in higher plants, the identity of the different floral organs isspecified by different classes of homeotic selector genes, termed class A, B, C, D and E genes, with A specifying sepals, A+B+E petals, B+C+E stamens (male microsporophylls), C+E carpels (female megasporophylls), and D ovules<ref name="ref3" /><ref name="ref4" />. The genes providing the different floral homeotic functions have been cloned from several plant species<ref name="ref3" />. Nearly all of them belong to the family of MADS-box genes, which encode transcription factors. Almost all known MADS-domain proteins from vascular plants share a conserved structural organization, the so-called MIKC-type domain structure, including MADS (M), intervening (I), keratin-like (K) and C-terminal (C) domains<ref name="ref3" /><ref name="ref4" /><ref name="ref5" />. Genes closely related to class B MADS-box genes have been identified by phylogenetic studies, and are referred to as B(sister genes)<ref name="ref3" />.
 ==Labs working on this gene==