Os02g0535400 - Revision history

192.168.72.52 at 06:38, 14 May 2015

2015-05-14T06:38:35Z

Nengpan Zhang: /* Expression */

2014-06-10T10:30:51Z

‎Expression

Nengpan Zhang: /* Function */

2014-06-10T10:27:35Z

‎Function

Nengpan Zhang: /* References */

2014-06-10T10:18:21Z

‎References

Nengpan Zhang: /* References */

2014-06-10T10:16:58Z

‎References

Nengpan Zhang: /* Annotated Information */

2014-06-10T10:06:44Z

‎Annotated Information

Nengpan Zhang: /* Annotated Information */

2014-06-10T09:59:58Z

‎Annotated Information

Nengpan Zhang: /* Annotated Information */

2014-06-10T09:58:58Z

‎Annotated Information

Nengpan Zhang: /* Annotated Information */

2014-06-10T09:58:10Z

‎Annotated Information

124.16.129.48 at 19:16, 22 July 2012

2012-07-22T19:16:29Z

← Older revision		Revision as of 06:38, 14 May 2015
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	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]
−	~~GeneName = Os02g0535400\|~~
−	~~Description = Conserved hypothetical protein\|~~
−	~~Version = NM_001053574.1 GI:115446518 GeneID:4329567\|~~
−	~~Length = 2767 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os02g0535400, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 2\|Chromosome 2]]\|~~
−	~~AP = Chromosome 2:20584982..20587748\|~~
−	~~CDS = 20586274..20586295,20587512..20587747\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008395:20584982..20587748~~
−	~~source=RiceChromosome02~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008395:20584982..20587748~~
−	~~source=RiceChromosome02~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>gtagagactagagaggccacaggcggcggcggcagcagcggaagtctctcgtctcgtccgtggagaaagggggaagacgaagatgtcgacggaggcggagaccaccagcgccgccgcccccgcccccgcccccgcccccgcatcggcgccggcgcggtgccagcggataggctgcgacgccacgttcaccgacgacaacaaccccgacggctcctgccaataccacccctccgtgacctatgtttcatgatggcatga</cdnaseq>\|
−	~~AA = <aaseq>VETREATGGGGSSGSLSSRPWRKGEDEDVDGGGDHQRRRPRPRP RPRIGAGAVPADRLRRHVHRRQQPRRLLPIPPLRDLCFMMA</aaseq>\|~~
−	DNA = <dnaseqindica>1454..1475#2..237#agtagagactagagaggccacaggcggcggcggcagcagcggaagtctctcgtctcgtccgtggagaaagggggaagacgaagatgtcgacggaggcggagaccaccagcgccgccgcccccgcccccgcccccgcccccgcatcggcgccggcgcggtgccagcggataggctgcgacgccacgttcaccgacgacaacaaccccgacggctcctgccaataccacccctccgtgagtcctcctcctccccttcttccccttctaaatctcatggggtctaactaattgccccgcggattacgggagtggaggagtctgttcttctagggggaagttgggcagttcgaatctgtaatggcggggtcaagggcttcgcctgctcttgggaaacttctggggacgaattgggcagcggggaatatttgagttctatatacaataatgaaatttagtgtcatatagagatatgttggactacactcattactcatagtagattagtggattggattgcacgattatactcatagtagattagtagattagtggattggattacacgattcaatcagaagggttattgatgccattggcaaaaggtattgtagttgtcgcaaacacgtgatattaggtggttttttttttgccccttatttgggttaggatattggtaccttgaagctgcctcttgatgaggcatcatgggcaatgtgtctgatgtgtggcgagggatttttttcccctttggatatggctcacatgagtgctgactatttacaaaaagcaaaaggaaaagaggcaaagaactacctttcccttcagagagtaaacaaaattaatttggaataaagatatgacattctctttctctttctctttttcaatccctaccgtgtctaagggtcagatacccatgttgtaccaaaaaaggattaagtacacaaacagctgctgcaaaacttcttcacaacttcttctatttccaattgtgaatatctcttgataacaatggaagaaataatggttaattttttcaagcaattcttttcttttgtctccaaagattcaaatcacattgctaactttgtgatgccatgccaaattccattgtaatatttaaacaccaaattcacactcatgtttactgcatttggtctagaagaaatacacaacagctagtataagagaatacctaaatgtggtcccattcttttttggaaaatgacgaataaagcaacatatttaaacaagactcgtataatatgtttgctaactctctttatggtttcttgtctactgccaaatactatatttatttccaattttccactgtagtgttctgaccactgtctccttttttttttcttgcagggagtaagtgtttcttctttgcatgagagggtacttctagaaggatgcataggttaattttctaagattttttttttcagcctatgtttcatgatggcatgaaacagtggagttgctgtaagcaaaaaagccatgattttagcctatttttggctattcctgggtaaggatccctctctagtatttccttttcacagcatgcacccacaacataagtcaactatgtgctatcaacctgaacattaccatctgggctggcctgttgtgtattttagcaaaaccaagcatgaatgcatgaatcgtatgctgtactgctgtgtaggtgcaaaactggaaagcacacaactgagaaaccaatcacaaaagcagttcctactaaaccatcaaaggcagttccagtccagacttcgaagcagagtgtgggagctgacacttgctcaaggtgccgtcaaggtttcttttgctctgaccatggtgagtttctgtctataagcataatgcttggatacaactgattgatcccctatttgggtgtaacagctgattgtttcgttattattttaacgactgacatccctatgcatttttatgtgttgatagaataaatcgtaacttttaatttaacagattatgcactgctattttttcaggatcacaacccaaggcacaaataccaaccgctaccagtgatactaacatggtacctgttgagaagcctgcagttccaccaccaaagaaaaaaattgatctgaatgagcctagggtttgtaagaacaaaggatgtggtaaaacctacaaggagaaggataatcatgatgaagcatgcgattaccatccaggacctgcagtttttcgcgacaggattagaggggtatgtttttggttcaaacttattgttgttttgctctattccttgatttttgccatcactgactctgacatctttttaaaaatttttgcagtggaaatgttgtgatattcatgtcaaggaatttgatgaatttatggagatccctccgtgcacaaagggttggcacaatgctgatgccgcatgaattttcaccatgccccatcttggaataagaaccctattagcataaggttctcttgtatctcgtagtgcataaggtgcaatttttatggagaattttacttggagttggggagtgtggcaaagataccgagaataggctgttttaccgtgctctgtgtgactgctgcaaaagtgtgcgtggtgtttcattttttgtctgaaacggggacttgaaattgtgtgtggagacttcggtctcgttcgttggctcgttgccaattcttcatagttagaaaatcaaatgctccatctaaatgctatcctgcagacttttggtaacacccatctttctgtttatatg</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001053574.1 RefSeq:Os02g0535400]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 2]]~~
−	~~[[Category:~~Chromosome 2]]

@@ Line 8: / Line 8: @@
 ===Expression===
-Please input expression information here.
+PCR reactions were performed with specific primer sets: Os ''RAR1''(5'-TGCAAAACTGGAAAGCACAC-3' and 5'-GGAACTGCAGGCTTCTCAAC-3')<ref name = "ref 1"/>.
 ===Evolution===

@@ Line 3: / Line 3: @@
 ==Annotated Information==
 ===Function===
-The gene locus Os02g0535400 is a gene called Os RAR1([http://www.ncbi.nlm.nih.gov/gene/?term=AK111881 NCBI Gene ID: 4329567]) and this gene codes a protein called Cysteine and histidine-rich domain-containing protein RAR1( [http://www.ncbi.nlm.nih.gov/protein/Q6EPW7.2 NCBI ACCESSION:Q6EPW7])<ref name = "ref 1"/>. RAR1 is an important component in innate immunity in Rice. RAR1 is required for basal resistance against compatible races of rice blast and bacterial blight and this resistance is mediated by Os Rac1. Interestingly, Os RAR1is not required by the three examined riceRgenes for blast resistance. Recently, it was shown that OsRAR1is not required for Pish-mediated blast resistance<ref name = "ref 2"/>. RAR1 is critical for Os Rac1–mediated enhancement of PAMP signaling. Therefore, RAR1 activity in rice innate immunity may be on a broader scale than in those other species.
+The gene locus Os02g0535400 is a gene called Os RAR1([http://www.ncbi.nlm.nih.gov/gene/?term=AK111881 NCBI Gene ID: 4329567]) and this gene codes a protein called Cysteine and histidine-rich domain-containing protein RAR1( [http://www.ncbi.nlm.nih.gov/protein/Q6EPW7.2 NCBI ACCESSION:Q6EPW7])<ref name = "ref 1"/>. RAR1 (for required for ''Mla12'' resistance) is an important component of ''R'' gene–mediated disease resistance, which contains two zinc binding finger motifs termed CHORD-I and
 ===Expression===

@@ Line 18: / Line 18: @@
 ==References==
 <references>
-<ref name = "ref 1"> Thao NP, Chen L, Nakashima A, Hara S, Umemura K, Takahashi A, Shirasu K, Kawasaki T, Shimamoto K.RAR1 and HSP90 form a complex with Rac/Rop GTPase and function in innate-immune responses in rice.Plant Cell. 2007 Dec;19(12):4035-45.
+<ref name = "ref 1"> Thao NP, Chen L, Nakashima A, Hara S, Umemura K, Takahashi A, Shirasu K, Kawasaki T, Shimamoto K.RAR1 and HSP90 form a complex with Rac/Rop GTPase and function in innate-immune responses in rice.Plant Cell. 2007 Dec;19(12):4035-45.</ref>
 <ref name = "ref 2">
-Takahashi, A., Agrawal, G.K., Yamazaki, M., Onosato, K., Miyao, A., Kawasaki, T., Shimamoto, K., and Hirochika, H. (2007). Rice Pti1a negatively regulates RAR1-dependent defense responses. Plant Cell 9: 2940–2951.
+Takahashi, A., Agrawal, G.K., Yamazaki, M., Onosato, K., Miyao, A., Kawasaki, T., Shimamoto, K., and Hirochika, H. (2007). Rice Pti1a negatively regulates RAR1-dependent defense responses. Plant Cell 9: 2940–2951.</ref>
 </references>

@@ Line 17: / Line 17: @@
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==

← Older revision		Revision as of 19:16, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os02g0535400\|		GeneName = Os02g0535400\|