Os02g0622100 - Revision history

Xysj2012: /* Structured Information */

2015-05-14T05:47:24Z

‎Structured Information

Zhangye at 05:06, 12 March 2015

2015-03-12T05:06:54Z

124.16.129.48 at 19:19, 22 July 2012

2012-07-22T19:19:10Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os02g0622100| Description = Similar to Dual specificity kinase 1| Version = NM_001054000.1 GI:115447370 GeneID:4330018| Length = 5942 bp| Defin..."

2012-06-25T02:42:01Z

Created page with "{{JaponicaGene| GeneName = Os02g0622100| Description = Similar to Dual specificity kinase 1| Version = NM_001054000.1 GI:115447370 GeneID:4330018| Length = 5942 bp| Defin..."

New page

{{JaponicaGene|
GeneName = Os02g0622100|
Description = Similar to Dual specificity kinase 1|
Version = NM_001054000.1 GI:115447370 GeneID:4330018|
Length = 5942 bp|
Definition = Oryza sativa Japonica Group Os02g0622100, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
AP = Chromosome 2:25624670..25630611|
CDS = 25625185..25625260,25625393..25625433,25626522..25626591,25626665..25626813,25626959..25627054<br>,25627681..25627751,25628347..25628408,25628643..25628706,25628794..25628878<br>,25628983..25629109,25629182..25629243,25629331..25629391,25629482..25629615<br>,25629823..25630116|
GCID = <gbrowseImage1>
name=NC_008395:25624670..25630611
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008395:25624670..25630611
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggagcatgtgatcggggggaagtttaagctggggaggaagattgggagcggatcttttggggagctataccttggtgtgaatatacagagcagcgaggaggtagccatcaagttggaatctgtaaaatcaaggcatcctcagcttcattatgagtcaaaactatacatgcttctgcaggggggaactggaattcctcatctgaagtggtttggagtggagggggagtacaatgtcatggttatcgatcttcttggtccaagtttagaggacttattcaactactgcaacagaaagttttctcttaaaacagtacttatgcttgctgatcagatgatcaacagggtagagtacatgcacactagggggtttctacatcgtgatatcaagccagacaacttccttatgggtttaggccgcaaagcaagccaggtttatgtcatcgactatggtcttgcaaagaaataccgggacctccaaactcataagcatataccttacagggagaacaaaaatctcacaggaacagcacgctatgctagtgtaaacacccatcttggagtagaacaaagcaggagagatgatttagagtctctgggctatgtgcttatgtatttcttaagaggaagccttccttggcaaggtctaaaagctggcacaaaaaaacagaaatatgacaaaattagtgaaaagaaaatgcttactccagttgaggttctctgtaaatcttatcccacagagttcatttcatacttccattactgtcgatctttgcgatttgaagataaaccagactacagctatttgaagagacttttccgagatctattcatccgtgaagggtaccagcttgattatatatttgattggacgaagcaaggttcagaaagtaacagattgcgatcaagtggaaggacaagtgggttggtgggaccatctgcagaacggactgaacgagctgcagcaagacaggatgttcctgacagattctctggtacagtcgatccatttgctagaagaactggctctggttctggccattacggagagcacacaaagcacagaaatatattggattcattacttgcacccaagacggctgttgatttagataaaagaaggcccacatcatcatctcgtaatgggagcacatcaaggaaggctctcttgtcaagcagcagaccaagttctggagatcccattgatccgaaccgcagtaacctaattccaaccagcagtggcagcagtcgcccatcaactatgcagaggcttcaccagtcaacaggacttgagaccaggtcctcgcttaccaaaactgcaagaaatgtccatgatgatcccactttgaggacctttgaacgcctttcaatcagtgctgacagaaggaaataa</cdnaseq>|
AA = <aaseq>MEHVIGGKFKLGRKIGSGSFGELYLGVNIQSSEEVAIKLESVKS RHPQLHYESKLYMLLQGGTGIPHLKWFGVEGEYNVMVIDLLGPSLEDLFNYCNRKFSL KTVLMLADQMINRVEYMHTRGFLHRDIKPDNFLMGLGRKASQVYVIDYGLAKKYRDLQ THKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKA GTKKQKYDKISEKKMLTPVEVLCKSYPTEFISYFHYCRSLRFEDKPDYSYLKRLFRDL FIREGYQLDYIFDWTKQGSESNRLRSSGRTSGLVGPSAERTERAAARQDVPDRFSGTV DPFARRTGSGSGHYGEHTKHRNILDSLLAPKTAVDLDKRRPTSSSRNGSTSRKALLSS SRPSSGDPIDPNRSNLIPTSSGSSRPSTMQRLHQSTGLETRSSLTKTARNVHDDPTLR TFERLSISADRRK</aaseq>|
DNA = <dnaseqindica>516..591#724..764#1853..1922#1996..2144#2290..2385#3012..3082#3678..3739#3974..4037#4125..4209#4314..4440#4513..4574#4662..4722#4813..4946#5154..5447#ggggtacccataatctccacatcctcctcctcccacctctactccggccaccggccgcctcctcccacgctccccccgccgccgccgccgccgccgccgccgccatcgccacccgcctcctccttctagcagtagtaataaaggaaggaagaaaatccaccgccctacccctatctatccgttgcctcacgtccgtttcccacattttccgcttccttcgtccatcgccatctattaacccgcccccccacgattcctgccgagaaatttctcccccccacagagagggaggcgatccctagcctcgtcctgaatctcgcggcgccgccaattcgatctgcccgcgccgtctcagggcggcgaatcttgggctggagtcggggggagagatccgggatcttccttttcttgggtgttcccgggacgcaaatcttgcggccgccgggcaatgtgactggggttcttgtggggggtgaggcgattcgcgcgcgcattcggtgctgaatcttgcggggatggagcatgtgatcggggggaagtttaagctggggaggaagattgggagcggatcttttggggagctataccttggtacgttcctcgtggggttctcggatctctcgtctatcgccgctcgttgcgaggcaccgttcgtttttcttcttcttactgtttacgctgtttgtgatgatgtcgttgattcatggattgtttcgattacaggtgtgaatatacagagcagcgaggaggtagccatcaagttggtatgtgaagatgatttcgtttctgatatataagccttttcttacgccaatgtatatattgtagtaattagtattgcattggtttcttttgtgctgatgttgtgatgcgaatatggtttgttctgccctcctagaaaagattagatcacctgaggtgtaacagagtttgcattgctgcatgatcagaaatttgaatgaagctacatgtatacgtccttgtgaaatcgttgacatgacctcttgcttagtatcatactctttcatacaagtagaaaccaggtcttctaaatttttttggttctccgacctaactggtctattagagatgttcagaattgggaagtaagaaaaaagaggtgaagatttttcagcttccaattggatcgttgacattatttaattgcttcatctaggtgatgtgtgtggtttacgagagcacttattctgaaacatctgtaaataacatgaggcagcccaccaacccttgtcatactatattatctgctcttgtaacattaggactcagggcagccgcccgtgattctgttcacatcctgtaagacctgcaaacaaagcttttccgtctggggaaacgaagccttttggaataccttgtgcatgttttggctaggttgggtagctgtgaagcattggttattgtctatttcaatgtttcaaagcagcattcaaggattctcctgatattattgctccggttcagtggtcaatgcacttcttttagaagcttctattatttcgatatgattgttagtagtttggtcacatctacttttcaagcaacttaccttgtaagttcacgtagttgctagttttgtgaaccagctttgcctttctaatcatgaatgccatttctatattgtaagcctgtatgcattggattgctttcttaaatggtgcaatccttgttctatgagaaaatgttggtaataatgaaaataaggtgttcggaaacttggaaagtgtatttctatattgacatgaatagtcactgtcagcactgattacttgtccttgctgacactgggacaaattacctaaaccttttctgtcatctcttattttgttaggaatctgtaaaatcaaggcatcctcagcttcattatgagtcaaaactatacatgcttctgcaggggggaagtaagtgtaatacgggaaactgtttatctatttaaataaaattgttcacttattatgtcttggttatgttcagctggaattcctcatctgaagtggtttggagtggagggggagtacaatgtcatggttatcgatcttcttggtccaagtttagaggacttattcaactactgcaacagaaagttttctcttaaaacagtacttatgcttgctgatcagatggtgggtttttcttactgaattctattattttggctgttaattttggttacctgtatgactaaatttcaataaattaacgatcaaggaaagtaaatttcaagactttatttgtctgatttaaccactaacttcctgttctatacagatcaacagggtagagtacatgcacactagggggtttctacatcgtgatatcaagccagacaacttccttatgggtttaggccgcaaagcaagccaggtttgtcccattcatctgcagttgctggtagatataattcattatttttctgcgctttggatgttgttggttgcctggtctgtataattttgtattgataacatcttgattcgagtatttggcctggtttctaagtatcatcttttttggtgctatgaagttttgtcaattggcagtagtatcttcaattatactttctaagagaggctatgatattaccaacaacagctgtcagctgtgctctgtgtgcttgatgattatactagtttctttatggagaaattatcttgtataataaattttagtattttttagaaacatcttttttatgaatgtagaaagactttggagaatttaaactgctgactgtgatcatcgatttaccatacgttttattatttcgtaagaacttgaagaatacaaggataatatttctgttttctcttatttgtgcatactgttactcagcatatgcatatcaactgcctttctagtactgctgctaactgatgatcgaaagcctgcatttacttcatatgtgatatatcttacaatgaataacatcaagaaataagcacaactttttgtagacattgttgtgagtgatctttacaattctgtaacaggtttatgtcatcgactatggtcttgcaaagaaataccgggacctccaaactcataagcatataccttacaggtaattagaaattcttctctagtaaatgttttagaaagtatttatgtttacacctggaagattgttgtagtagagcactcagcttatgaaaaatcatactaaagtatattgttttggtagcaacaccgtttttatctgacagagctcaaagtgcttaatttagaatttttcattaccataactgtgcttggcacactaccggtggagcagtatctgctattaaccatattggcaagcagtatctgctattaactatatagataagcccacacaattttgttatctgtttttacttcttgaaattaagagaaatgcttgatagtagtgagtaatgacagcagcattgcaacaatttgatcaatgatgattgtgataattgataaaccattttctgttatgttttagtactatactgtgacattggtcagtaacacgggttacactatcactattcactacttagcagttacctccttcatactaatagtaaaaagtttaccagtttatctaccattatatttctatgcatgattatgcttcatacttttctggggatatatgtttgaagcttacatgtttttctttcctaccatagggagaacaaaaatctcacaggaacagcacgctatgctagtgtaaacacccatcttggagtaggtaagtgtctttacctgttactgattcgttttcatcagaagagattttattttttaaaaatctgaactaacgcaaactaatatgtatttaagaggtgcaaaatgtggcaacactgaaaagttatgaacaagtgtagctcctttgaaacaaataaagtttagcttgcaacaaaattagtcaattgcactctgactgctagtatatgcgttcttttaattctgtttttcactacagaacaaagcaggagagatgatttagagtctctgggctatgtgcttatgtatttcttaagaggaaggtgagacgatgcttgttttctattttttaaaattccattttatacgacaatacattttattgatctatgttaacttgtccatctcagccttccttggcaaggtctaaaagctggcacaaaaaaacagaaatatgacaaaattagtgaaaagaaaatgcttactccagttgaggtaatggaaattggtttccatgcaaaaaaaatctatgaagaagcatgacattttttgatttaattgcaacttaaccttatcatattttacacaattttgtataggttctctgtaaatcttatcccacagagttcatttcatacttccattactgtcgatctttgcgatttgaagataaaccagactacagctatttgaagagacttttccgagatctattcatccgtgaaggtatgctcaaatataatacaatgaagtatctctgcatacacatctaaaatgatttcctctcaattcttgcagggtaccagcttgattatatatttgattggacgaagcaaggttcagaaagtaacagattgcgagtatgtctgctattcctttttctaactttttttggtaatgcaaagctttaccgtactaaatgtgtagcatcttttccttgcttccagtcaagtggaaggacaagtgggttggtgggaccatctgcagaacggactgaacgagctgcaggtttgtcagtagcatagacattttttgaatttatatttaggaaataagtttggaaaataacaggggttttttggggtgttgtctcaacagcaagacaggatgttcctgacagattctctggtacagtcgatccatttgctagaagaactggctctggttctggccattacggagagcacacaaagcacagaaatatattggattcattacttgcacccaagacggtaagaaattgagcagctagatcaccttctagcagtatcctaaaaaaactgctcaaattagcaggataatgagacggatgtttcttcgttagtcttgaccatcttttcgcagaaatcttttgttgtgtttttacattacgttgctgttgatgatagctggaactctgtattctggaaggcttatgtcaattttaccatgcgtgctaggctgttgatttagataaaagaaggcccacatcatcatctcgtaatgggagcacatcaaggaaggctctcttgtcaagcagcagaccaagttctggagatcccattgatccgaaccgcagtaacctaattccaaccagcagtggcagcagtcgcccatcaactatgcagaggcttcaccagtcaacaggacttgagaccaggtcctcgcttaccaaaactgcaagaaatgtccatgatgatcccactttgaggacctttgaacgcctttcaatcagtgctgacagaaggaaataatgcttcgaagagcaaaagatgtgagttgctgctccagtgaggacactggggattccttcacacgatgattactgatcaacaagtaaaaaccattctgtgctacagatgatgctgagatatgcttaagagtgaagtttgcttactgaatcttggcgcaaaagaaatggttaaagaaatcattttacacgccattcagaagaacccggaccagcaactgtgctggtccaattaatgctgatgttgatcaaatatttgtagaaatgttattgaaataaagcagttcattactagcaaaatatgtactatcacgtagtatttcctttgtgcactgcaactagaacttctgccactctgccactatactcttaagataatcaatatccttttttgccttagtgccctttagatactccgtcacattatttccttaaaaacttggagatcatgtaatcgttattaatatatcatacgatcagatatcgttattcaactagc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054000.1 RefSeq:Os02g0622100]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 2]]
[[Category:Chromosome 2]]

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+''LTG1'' '''affects rice growth''' at '''LT''' via an '''auxin-dependent process'''(es)<ref name="ref1"/>.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+*A functional nucleotide polymorphism was identified in the coding region of LTG1, causing a single amino acid substitution (I357K) that is '''associated with the growth rate''', heading date and yield of rice plants grown at LT. LTG1 plays an '''important role''' in the '''adaptive growth''' and '''fitness''' of '''rice cultivars''' under conditions of '''low ambient temperature'''<ref name="ref1"/>.
 ===Expression===
-Please input expression information here.
+*The expression of ''LTG1'' is not regulated by temperature, and therefore is unlikely to account for the LT sensitivity. The polymorphism at nucleotide 1070 in LTG1 represents a functional nucleotide polymorphism (FNP) responsible for the LT tolerance of Asominori<ref name="ref1"/>.
-===Evolution===
+===Knowledge Extension===
-Please input evolution information here.
+*Low temperature (LT), defined as a low but not freezing temperature (>0°C). Apart from water availability, low temperature is the most important environmental factor limiting the productivity and geographical distribution of plants across the world. To cope with cold stress, plant species have evolved several physiological and molecular adaptations to maximize cold tolerance by adjusting their metabolism<ref name="ref2"/>.
-You can also add sub-section(s) at will.
+*The regulation of some gene products represents an additional mechanism of cold tolerance. A consequence of these mechanisms is that plants are able to survive exposure to low temperature via a process known as cold acclimation<ref name="ref2"/>.
 ==Labs working on this gene==
-Please input related labs here.
+*National Key Laboratory for Crop Genetics and Germplasm Enhancement, Jiangsu Plant Gene Engineering Research Center, Nanjing Agricultural University, Nanjing 210095, China
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==

← Older revision		Revision as of 19:19, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os02g0622100\|		GeneName = Os02g0622100\|

@@ Line 36: / Line 36: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]