Os02g0661100 - Revision history

Xysj2012: /* Structured Information */

2015-05-14T05:51:49Z

‎Structured Information

Zhangye at 15:47, 28 January 2015

2015-01-28T15:47:45Z

Zhangye at 08:29, 21 January 2015

2015-01-21T08:29:11Z

Zhangye at 07:45, 21 January 2015

2015-01-21T07:45:45Z

Zhangye at 07:43, 21 January 2015

2015-01-21T07:43:46Z

124.16.129.48 at 19:20, 22 July 2012

2012-07-22T19:20:17Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os02g0661100| Description = Similar to Trehalose-6-phosphate phosphatase| Version = NM_001054180.1 GI:115447730 GeneID:4330221| Length = 4017 bp..."

2012-06-25T02:45:14Z

Created page with "{{JaponicaGene| GeneName = Os02g0661100| Description = Similar to Trehalose-6-phosphate phosphatase| Version = NM_001054180.1 GI:115447730 GeneID:4330221| Length = 4017 bp..."

New page

{{JaponicaGene|
GeneName = Os02g0661100|
Description = Similar to Trehalose-6-phosphate phosphatase|
Version = NM_001054180.1 GI:115447730 GeneID:4330221|
Length = 4017 bp|
Definition = Oryza sativa Japonica Group Os02g0661100, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
AP = Chromosome 2:27654468..27658484|
CDS = 27654767..27654817,27654901..27654993,27655089..27655229,27655341..27655418,27655514..27655615<br>,27655788..27655844,27655963..27656061,27656172..27656243,27656332..27656472<br>,27656590..27656871|
GCID = <gbrowseImage1>
name=NC_008395:27654468..27658484
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008395:27654468..27658484
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggatttgagcaatagctcacctgtcatcaccgatccggtggcgatcagccagcagttgttgggcggcctgccttcaaatctgatgcagttttcagtcatgcccggtggctactccagctctggcatgaacgttggtgtcagtaggctcaaaatcgaggaagtccttgtcaatggactgcttgatgccatgaaatcctcgtcacctcgcaggaggctgaatgtagcatttggcgaggacaattcatctgaagaagaagaccctgcttacagcgcttggatggcaaaatgtccttctgctttggcttccttcaagcaaattgtagccagtgcacaagggaagaagattgctgtgtttctagactatgacggcacactgtcgcctattgtggatgatcctgacaaagcagtgatgtctcccgtgatgagagctgctgtgagaaatgttgcgaagtacttccccactgcaattgtcagcggaaggtcccgcaataaggtgtttgaatttgtaaaactgaaggagctttattatgctggaagccatggtatggacataatggcaccttcagcaaatcatgagcacagtgctgaaaagagcaaacaggccaatctcttccaacctgcacacgactttctgccaatgatcgatgaggttaccaagtccctcttgcaagttgtcagtggaattgaaggtgcaactgttgagaacaacaaattctgcgtttctgtacattatcgcaacgttgcagagaaggattggaaactggtcgcacggctcgtaaacgaagtgctggaggcttttcctcgtctcaaagtaaccaatggacgaatggttttagaggttcgtccggtgatcgactgggacaagggaaaggctgtggagtttctgctccagtcactcgggctaaatgactctgaaaatgtgatccccatctacattggagacgacagaactgacgaagacgctttcaaggtacttcgacagcgaaattgcggttatggaatactagtttcacaggttcccaaggaaactgaagccttctactcgctgagagatccatctgaagtgatggagttcctcaatttcttggtgagatggaagaagcactcagtgtga</cdnaseq>|
AA = <aaseq>MDLSNSSPVITDPVAISQQLLGGLPSNLMQFSVMPGGYSSSGMN VGVSRLKIEEVLVNGLLDAMKSSSPRRRLNVAFGEDNSSEEEDPAYSAWMAKCPSALA SFKQIVASAQGKKIAVFLDYDGTLSPIVDDPDKAVMSPVMRAAVRNVAKYFPTAIVSG RSRNKVFEFVKLKELYYAGSHGMDIMAPSANHEHSAEKSKQANLFQPAHDFLPMIDEV TKSLLQVVSGIEGATVENNKFCVSVHYRNVAEKDWKLVARLVNEVLEAFPRLKVTNGR MVLEVRPVIDWDKGKAVEFLLQSLGLNDSENVIPIYIGDDRTDEDAFKVLRQRNCGYG ILVSQVPKETEAFYSLRDPSEVMEFLNFLVRWKKHSV</aaseq>|
DNA = <dnaseqindica>3668..3718#3492..3584#3256..3396#3067..3144#2870..2971#2641..2697#2424..2522#2242..2313#2013..2153#1614..1895#agcactccatcttcctccatctgcgtattttccaacacatctctcttgcagttcgtttcaagtctttcattaaggtgtgcgtcttcttctctttgtcattcttctagatcacctgcttatacttctgcatttctgcatgcaatgctcagttggtccaacatttgttctttgaacttactgcatgctcttttgatgtctttgtttctgcaaaaatataggcaccgaagtgccaaaactgaacttcggtgcctttctcactgagaaaacggatacttttctgttgtaaaggatgctgtgattgttggagttcatgtaggtcctcgaaaagtgtgaaaacagccaaaaaatgcactcgttctgagaattgcttgagaactgtaaacatggccacaatttgctagagctagctaaaactgctatcggatccacttatttccttacctttttcttgattttttcttgtttcatctccctagggttgttaatgttcagcatatccattgacattttcttttagacacccagttttcttattttctgaccgggtcaatttccactcaaagttcgtatttgaaaacatgttcgatgaccaaaacaattttttcaagtctattcttcttcaagtcaattctcctaaagatttccaacttgatttttttttcacaataaaaatctctaaccttacgttatatgcttccatcacacagtttagtagaatatataagctgacgttattgtgcttccatcatggctaatagcgatgtactagtggttgctcttttaaggttggtgcccatggttaattgcgttctgaactttgacgcgttaggtttacctaccatttctttgagttcagaaacactcattaagacattaacccatgggcccaagcacacatggcctcagtgattagtccagcatatcgttgtagtagatatcaagacattgagcctaactgtgttaatgatcatccttttcctccggcagatattttattcttttttattcgactcagagtgacattgtactgctaaaccacagttgatgccacacttaatcctgggcccattttttttctttccttggcatcttgtagtattttcccttttgttgatgttgatttgttcctttgctcatgaatgacaaggacacacatttattacggcctgacacttgaggaggacatggctgtcgttttacttctgtgtaaatgaaaagatttttccttcttgatttatgcagtaaaactttctgaacatttgaagtgcaacggagctggcgttttatggcttttcctatgaagcaatccacatctctgatatagatgtgtactcgttctgaacatgacaaggtacggcacatcctaaaactgttactactattttcatctcatggaaaacaagagcagtttctctaatactttgtcttacattgtctgatcagttctcaggtatttctctgttgatgaactgcctccacacctgcagtgacaagaagacactgaagaagtggtttttcatcgacaagacagttggctaaattcagcagtgcactcgtccttaaagcgatcgatcatacttctttcttgatctcatcatcctaaattttcccaaatggatttgagcaatagctcacctgtcatcaccgatccggtggcgatcagccagcagttgttgggcggcctgccttcaaatctgatgcagttttcagtcatgcccggtggctactccagctctggcatgaacgttggtgtcagtaggctcaaaatcgaggaagtccttgtcaatggactgcttgatgccatgaaatcctcgtcacctcgcaggaggctgaatgtagcatttggcgaggacaattcatctgaagaagaagaccctgcttacagcgcttggatggtaagctacaatggttacattggttgtgtttctgttggcctaataagttgtactagtaactcgcaatccttttcttttcgtggacagtactgacatatgtgatgacttgtgttgcaggcaaaatgtccttctgctttggcttccttcaagcaaattgtagccagtgcacaagggaagaagattgctgtgtttctagactatgacggcacactgtcgcctattgtggatgatcctgacaaagcagtgatgtctcccgtggtaagtctgaatataaactctgaccaataactagcatttcttggttaatgaagagctgctttgaattaaattaaaaacttttcctcagatgagagctgctgtgagaaatgttgcgaagtacttccccactgcaattgtcagcggaaggtcccgcaataaggtaccgaaaatatggttgcatgcattttagtgtactagtattagaagccaagtgattgcatatgcaagtgtatgtcttatcttacatatggcttacttatctctatgcaggtgtttgaatttgtaaaactgaaggagctttattatgctggaagccatggtatggacataatggcaccttcagcaaatcatgagcacagtgctgaaaaggtgaggatttcttgcctatgtttctacaaatagagtgaaaaagtctaccttttttgggggcattctaacaaatatgttctagtgtaaaatactgactatggcttaattccaactacagagcaaacaggccaatctcttccaacctgcacacgactttctgccaatgatcgatgaggtgcatttctctttcaactttgaagtaaaaaagttgtattgctctatccagtttaacgcaaatataaaacgattccatcatctcattattattcatataaattactgtgattagtcctgatgggtgtgcaaaagttttgtgctatttgttaacaaactttttatttcaacaggttaccaagtccctcttgcaagttgtcagtggaattgaaggtgcaactgttgagaacaacaaattctgcgtttctgtacattatcgcaacgttgcagagaaggtaaaaactgtttttttttccgtcatacttttttctctgctcccaagcgcttggaaaatgaaaattcatctgacaatattgcttcttgtttgcaggattggaaactggtcgcacggctcgtaaacgaagtgctggaggcttttcctcgtctcaaagtaaccaatggacgaatggtaagaacgctatgccaagtctatttagctgtacactgaaacttacccatttcctggtaatttgcacatctatcaaaccctgtgctgaatattctggaaatatatcttcaggttttagaggttcgtccggtgatcgactgggacaagggaaaggctgtggagtttctgctccagtcactcgggctaaatgactctgaaaatgtgatccccatctacattggagacgacagaactgacgaagacgctttcaaggttcatatattttctggagaacacgtagtgctgtatatcctagtcgcatctttgattcagtgtaaactgatatagcggtcatttggtttaaccaggtacttcgacagcgaaattgcggttatggaatactagtttcacaggttcccaaggaaactgaagccttctactcgctgagagatccatctgaagtaagctcaaaagaatatctttcttcttccttgggtgattttcattcgacgtgttcatcattaactgtttgcttatcgtacaggtgatggagttcctcaatttcttggtgagatggaagaagcactcagtgtgaaaaaaagaagacagtctgagcaggttttactaatactactccggcagaaataactgtagtttccgaggcgacaattttgaagcattggacgctgtagatagatgtaataactctctagatatgtggttccaattcattcttattgatcgatgttattgtattgttcatgttctccaccgctgagaaaaattaatcagtgatggttgatccggtctcttgccattgtaagttgtaagcaagaaggccctcttcttagtatccatgctgatgaacgaaattaaaaccttcatttttcgtgt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054180.1 RefSeq:Os02g0661100]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 2]]
[[Category:Chromosome 2]]

← Older revision		Revision as of 15:47, 28 January 2015
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−	As a ~~mumber~~ of '''TPS/TPP gene family''', '''''OsTPP1(Oryza sativa Trehalose-6-phosphate phosphatase1)''''' confers '''stress tolerance''' in rice and results in the '''activation of stress responsive genes'''<ref name="ref1"/><ref name="ref2"/>.	+	As a member of '''TPS/TPP gene family''', '''''OsTPP1(Oryza sativa Trehalose-6-phosphate phosphatase1)''''' confers '''stress tolerance''' in rice and results in the '''activation of stress responsive genes'''<ref name="ref1"/><ref name="ref2"/>.

	==Annotated Information==		==Annotated Information==

@@ Line 38: / Line 38: @@
 ===Evolution===
-[[File: TPP Phylogenetic1.jpg|right|thumb|300px|'''Figure 1.''' ''Phylogenetic analysis of TPP domains.(from reference <ref name="ref4"/>).'']]
+[[File: TPP Phylogenetic1.jpg|right|thumb|300px|'''Figure 1.''' ''Phylogenetic analysis of TPP domains.(from reference <ref name="ref1"/>).'']]
-*Phylogenetic analysis of the TPP domains demonstrated that the '''whole TPS/TPP gene family''' in rice was grouped into '''three''' classes (Class I/II/III)(Fig. 1). '''Class I''' consisted of '''''OsTPS1'''''<ref name="ref4"/> which displayed high identity to '''''AtTPS1'''''<ref name="ref7"/> and '''''SlTPS1'''''<ref name="ref8"/>; '''Class II''' consisted of all the '''remaining OsTPSs'''; and '''Class III''' consisted of '''all independent TPP genes'''. The phylogenetic tree displayed a similar structure to that in ''Arabidopsis''<ref name="ref9"/>, suggesting the gene family was '''highly conserved''' and formed before the divergence of dicotyledonous and monocotyledonous angiosperms<ref name="ref1"/><ref name="ref4"/>.
+*Phylogenetic analysis of the TPP domains demonstrated that the '''whole TPS/TPP gene family''' in rice was grouped into '''three''' classes (Class I/II/III)(Fig. 1). '''Class I''' consisted of '''''OsTPS1'''''<ref name="ref4"/> which displayed high identity to '''''AtTPS1'''''<ref name="ref7"/> and '''''SlTPS1'''''<ref name="ref8"/>; '''Class II''' consisted of all the '''remaining OsTPSs'''; and '''Class III''' consisted of '''all independent TPP genes'''. The phylogenetic tree displayed a similar structure to that in ''Arabidopsis''<ref name="ref9"/>, suggesting the gene family was '''highly conserved''' and formed before the divergence of dicotyledonous and monocotyledonous angiosperms<ref name="ref1"/>.
 *''OsTPP1'' belongs to '''Class III'''. ''AtTPPA'' and ''OsTPP1'' were closely allied<ref name="ref1"/>.

← Older revision		Revision as of 07:45, 21 January 2015
Line 48:		Line 48:

	*Trehalose is a disaccharide sugar '''widely distributed''' in bacteria, fungi, insects, plants and invertebrate animals. In microbes and yeast, trehalose is produced from glucose by trehalose-6-phosphate synthase (TPS) and trehalose-6-phosphate phosphatase (TPP), and serves as a sugar storage, metabolic regulator and protects against abiotic stress<ref name="ref12"/><ref name="ref13"/>. However, its role in plants is not yet fully elucidated<ref name="ref1"/><ref name="ref12"/><ref name="ref13"/>.		*Trehalose is a disaccharide sugar '''widely distributed''' in bacteria, fungi, insects, plants and invertebrate animals. In microbes and yeast, trehalose is produced from glucose by trehalose-6-phosphate synthase (TPS) and trehalose-6-phosphate phosphatase (TPP), and serves as a sugar storage, metabolic regulator and protects against abiotic stress<ref name="ref12"/><ref name="ref13"/>. However, its role in plants is not yet fully elucidated<ref name="ref1"/><ref name="ref12"/><ref name="ref13"/>.
		+

	==Labs working on this gene==		==Labs working on this gene==

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+As a mumber of '''TPS/TPP gene family''', '''''OsTPP1(Oryza sativa Trehalose-6-phosphate phosphatase1)''''' confers '''stress tolerance''' in rice and results in the '''activation of stress responsive genes'''<ref name="ref1"/><ref name="ref2"/>.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+*Semi-quantitative RT-PCR indicated that both ''OsICE1'' and ''OsICE2''<ref name="ref3"/> were constantly expressed, but that cold stress sequentially upregulated ''OsDREB1B'', rice heat shock factor A3 (''OsHsfA3''), and trehalose-6- phosphate phosphatase (''OsTPP1''). It still remains uncertain whether ''OsDREB1B'' is involved directly or indirectly in the induction of ''OsHsfA3'' or ''OsTPP1'', leading to '''cold acclimation''' via trehalose synthesis<ref name="ref3"/>.
 ===Expression===
-Please input expression information here.
+*One of the '''TPP homologues''', ''OsTPP1'' was quickly induced under salt stress<ref name="ref6"/>. ''OsTPP1'' is of '''particular''' interest due to its initial transiently up-regulated pattern and different responses to salt stress<ref name="ref6"/>. Though the content before or after stress in the overexpression lines seemed higher than that in vector line, the difference was not significant.
 ===Evolution===
-Please input evolution information here.
+[[File: TPP Phylogenetic1.jpg|right|thumb|300px|'''Figure 1.''' ''Phylogenetic analysis of TPP domains.(from reference <ref name="ref4"/>).'']]
-You can also add sub-section(s) at will.
+*Trehalose is a disaccharide sugar '''widely distributed''' in bacteria, fungi, insects, plants and invertebrate animals. In microbes and yeast, trehalose is produced from glucose by trehalose-6-phosphate synthase (TPS) and trehalose-6-phosphate phosphatase (TPP), and serves as a sugar storage, metabolic regulator and protects against abiotic stress<ref name="ref12"/><ref name="ref13"/>. However, its role in plants is not yet fully elucidated<ref name="ref1"/><ref name="ref12"/><ref name="ref13"/>.
 ==Labs working on this gene==
-Please input related labs here.
+*National Key Laboratory of Plant Molecular Genetics, Shanghai Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, 200032 Shanghai, China
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==

← Older revision		Revision as of 19:20, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os02g0661100\|		GeneName = Os02g0661100\|

@@ Line 100: / Line 100: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]