Os02g0669000 - Revision history

192.168.72.52 at 06:45, 14 May 2015

2015-05-14T06:45:42Z

Sharry at 15:52, 9 June 2014

2014-06-09T15:52:42Z

Sharry at 15:49, 9 June 2014

2014-06-09T15:49:32Z

Sharry at 15:46, 9 June 2014

2014-06-09T15:46:31Z

Sharry at 15:31, 9 June 2014

2014-06-09T15:31:58Z

Sharry at 15:31, 9 June 2014

2014-06-09T15:31:05Z

Sharry at 15:30, 9 June 2014

2014-06-09T15:30:38Z

Sharry at 15:29, 9 June 2014

2014-06-09T15:29:06Z

Sharry at 15:27, 9 June 2014

2014-06-09T15:27:57Z

Sharry at 15:26, 9 June 2014

2014-06-09T15:26:42Z

← Older revision		Revision as of 06:45, 14 May 2015
Line 44:		Line 44:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]
−	~~GeneName = Os02g0669000\|~~
−	~~Description = Lipolytic enzyme, G-D-S-L family protein\|~~
−	~~Version = NM_001054223.1 GI:115447816 GeneID:4330264\|~~
−	~~Length = 4369 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os02g0669000, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 2\|Chromosome 2]]\|~~
−	~~AP = Chromosome 2:28045214..28049582\|~~
−	~~CDS = 28045535..28045761,28045844..28046093,28046186..28046422,28046506..28046636,28049297..28049540<br>\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008395:28045214..28049582~~
−	~~source=RiceChromosome02~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008395:28045214..28049582~~
−	~~source=RiceChromosome02~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atggctggacagatgctaccgccgattgcgcttgttgctgtggccatctgtatcaccgcggcggcggcggcgaaggtgccggcgatatacgtgttcggcgactccacggccgatgtcggcaacaacaactacctgaccggcgccgccgtgccgcgggcaaacttcccgcacaacggcattgacttccccacgtcgcggcccaccggccggttcagcaacgggtacaacggcgtcgacttcttggctcttaacatgggattcaggcgcagccccccaccgttcctcgccgtggctaacaaaaccagcaacccattgttcagggggctccagggaacaaactttgcctctgcaggatcaggcattctcgactcaacaggtcaatccatcatcccaatgagcaagcaagtgcagcaattcgccgccgtgcaacgcaacatctcagcacgcatcagccagcaagccgctgacaccgtgctgtcgagatccctgttcctgatcagcaccggcggcaacgacatcttcgccttcttctccgcgaacagcacgccgtcgtccgcggagatgcagcggttcgtcaccaatctcgtatcgctctacacaaatcatgtcaaggatctgtacgttctcggggcgaggaagttcgccgtgatcgacgtcccgccgatcgggtgctgcccctacccgagaagcctgcaaccgctgggcgcttgcatcgacgtcctcaacgagctggcccgtgggttgaacaagggagtcaaggacgccatgcacggcctcagcgtgagcttcagcggcttcaagtactccatcgggagctcccatgccgtggtgcaaagcatcatgaagcatccccaacgactcggattcaaggaggtcacgacggcttgctgcggctccggcaagttcaacggcgagtccgggtgcacgccgaacgccacgctgtgcgacaaccggcacgactacctcttctgggacctgctgcacccgacgcacgccacgtccaagatcgccgccgcggccatatacaacggctcggtccgcttcgctgcgccgataaatttcaggcagctggtggatgaccagcactag</cdnaseq>\|
−	AA = <aaseq>MAGQMLPPIALVAVAICITAAAAAKVPAIYVFGDSTADVGNNNY LTGAAVPRANFPHNGIDFPTSRPTGRFSNGYNGVDFLALNMGFRRSPPPFLAVANKTS NPLFRGLQGTNFASAGSGILDSTGQSIIPMSKQVQQFAAVQRNISARISQQAADTVLS RSLFLISTGGNDIFAFFSANSTPSSAEMQRFVTNLVSLYTNHVKDLYVLGARKFAVID VPPIGCCPYPRSLQPLGACIDVLNELARGLNKGVKDAMHGLSVSFSGFKYSIGSSHAV VQSIMKHPQRLGFKEVTTACCGSGKFNGESGCTPNATLCDNRHDYLFWDLLHPTHATS KIAAAAIYNGSVRFAAPINFRQLVDDQH</aaseq>\|
−	DNA = <dnaseqindica>3822..4048#3490..3739#3161..3397#2947..3077#43..286#agcccccacccagagccagcggactgcacctcgcagtccggcatggctggacagatgctaccgccgattgcgcttgttgctgtggccatctgtatcaccgcggcggcggcggcgaaggtgccggcgatatacgtgttcggcgactccacggccgatgtcggcaacaacaactacctgaccggcgccgccgtgccgcgggcaaacttcccgcacaacggcattgacttccccacgtcgcggcccaccggccggttcagcaacgggtacaacggcgtcgacttcttgggtacgtacagcttcgccgcccgtctttcctgtgctgtattgcctcgcgactctgcttgccatgcgatgcgagtatacttcggcacttcgcggtatagtagcggctggcatcgttgcatatctgacaaccacgtatatagccggtgattgtttcgttttttctgcatgttttttgtcaacttcggcattgcaagttttgtaacggtgctagagttgagtaggggtgaagactggagacgattaagtcttcgtctctatactatttccgcggtccaattaccgaaggcaagaagtggaaattgctttgaaaacggagagattgtcgcatactccctccgtcccaaaaaaaaccaacaaaggttgtgccatactacctttgtaaaaaaaaaaactacggagagtatgtttagatttgtttttgttttatggatcatatcttatcttaatataacaatattttgagagggagtaaatagaacataaaaaatgttttgaagaagaaccccatacttcagaactgtgaagtgcgcaacgccagggcagtgtgccactgtggcgcacacattccagaggtcgcctatgcttaaatcgatagttggctcgttgctgcccgaattaaatttgaaaatatattgttaattcattttatttttagaaatattcgagatttattttttaaaaaaattataccgttgatcttgcacaatcattatgcgaatgtgaggtggtgcgacttcgcgggcggtatcgcgcgagactgcgcggtcttgcgaaatgaaagaacgataccagatttcaaaatggttaattagtgattaattattatgattagcaattattaagtaatcattaattattattagttaaatagttaattagatcattagtcactaaccaaatggagtttgggatggtgtcgctctctgcatgagcgagaccgctcgtcattcctgcgacagcgcgcggtcgtgcggtcgccccacgataccgtcgttgatgtcacccctatattatttttattttcggttgtatgagatcgactgtatatttctataaaaataaattacatcctaaatatttttaaaaataaaattgaatgaacagtatttttcaaatttaattcgctgctgctccacttccgcacggggcgcaggcacacaggctttgggaagcgatgcttgcaaagagtggcagtgtccggctgttggcaggcgggcgcggctgaatggaccgatcactcgagacttggcgcttgtcgcacataaatggctgacccgcttgcatgtactagccttgatccgggccaccacgcactcattgcatgtccgaattggtaccaaaatctacggcacacatgacaaatctacagcagacacgatctgacgtacggtccaacatcgaggtcatgcgatcgcctttttaagcgttgggactgtttgggatggagattgggagataatgccaaaatacgataatgtgagcagcgcacgtatttgaaaaattcaaatacattttttgctggcaaatgccttataaaagaaaataaagatttaatcgtacgcgaaacatcaacatcgataataaaattaatatttgtaactattatatatatatatatatattttccaatgtgatagcatcttaagatttcaggtatgatgaatacaatacacacacatttcgctttgttccgagtcgatctcgaagatcctattacaataatattataggtgtttttccttttttttatgttgtctagatgcggtttttctacatctaaatgtagttgcgcttagcgcgtctgtagcataatcgttttcgcgatgcgtactatattttcttctcatggtattgttttcctcaccaaacctgcggtggctagcctaggtgctaaaaggactttctcaaagcgtatgtcgttcattatatattttgacatgaggggtttggtcactggtggggagggtagggcaagaagcatggcggacctaggctcattggccatggaagagaccaagaagggccttggccatgcattaaatagaaggatggtgttgtggcctagagggagaaggaaggtgttttcgtcatgtactcttcttgcctgatatgtaatgtttctcagctgagaaccattgcttacatgtcgctaacttttccgatcaggaatggttaaatatcgaattccaatctataatgcttctccaacagttagagattgatcagtaaaggtttgacatatggatgaataatggtttcatgttagttaggctttatcgggatcattgcttctatagtagtaagagcgagtacaatagcagggtacaagtcagttgtaagcacatatggagaagagaagagaagagagataaagaagacgggctataaacttgtagccagttgcagcatggactataatacattgtgcatatgagaggtgggaccatatattaatggtgtagtatatacttataagtaactattgtatgaatgagctattagattggctataaataaattgaagctagtagttggctatactattaaacttgctctaatagttagtattattatggggaatgtgtaagccacgagcacggagtagcgcttgcatttttgttgtatatctcgaggatcacaatattcttcaacctctgtcagctcttaacatgggattcaggcgcagccccccaccgttcctcgccgtggctaacaaaaccagcaacccattgttcagggggctccagggaacaaactttgcctctgcaggatcaggcattctcgactcaacagtaagcacgtcggcataaacccaaagccactgcacgatttttcgctgaacaccggctgatgacgacgaaacacgtgtgtgcagggtcaatccatcatcccaatgagcaagcaagtgcagcaattcgccgccgtgcaacgcaacatctcagcacgcatcagccagcaagccgctgacaccgtgctgtcgagatccctgttcctgatcagcaccggcggcaacgacatcttcgccttcttctccgcgaacagcacgccgtcgtccgcggagatgcagcggttcgtcaccaatctcgtatcgctctacacaaatcatgtcaaggtaaaaccacctttcgcttgtctctcatcacacaattttacggcgaagaaacacaaagaatctaactgaaagttgacgcgtgagcgcggcaggatctgtacgttctcggggcgaggaagttcgccgtgatcgacgtcccgccgatcgggtgctgcccctacccgagaagcctgcaaccgctgggcgcttgcatcgacgtcctcaacgagctggcccgtgggttgaacaagggagtcaaggacgccatgcacggcctcagcgtgagcttcagcggcttcaagtactccatcgggagctcccatgccgtggtgcaaagcatcatgaagcatccccaacgactcggtatctgaacattctacgcttcagtttcggatttctgaccaacgcaaggttcagagtttcgtgacacggcattggtgtgcaggattcaaggaggtcacgacggcttgctgcggctccggcaagttcaacggcgagtccgggtgcacgccgaacgccacgctgtgcgacaaccggcacgactacctcttctgggacctgctgcacccgacgcacgccacgtccaagatcgccgccgcggccatatacaacggctcggtccgcttcgctgcgccgataaatttcaggcagctggtggatgaccagcactagctagagcgtggcagtgtcaccgtgtaacgtagtactactaattgttgtacgtcgccgactatgtgtctgtttgtctggtgatattggtgcgtaggatatgctgggctgtgttcatcagtggcttgtgctttaggcggtggtgtagtttggatacacataccaaaatgtcatctccgttattattgttgcccttgttggtatttgcggtgtttgtgttcccaagtcgggataatttgagcctggagcggatgagccaaggacatcgcagctgcttacttggtgccaaatcggaatacaaactctaaacatgtaggtacatac</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054223.1 RefSeq:Os02g0669000]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 2]]~~
−	~~[[Category:~~Chromosome 2]]

@@ Line 30: / Line 30: @@
    Search on all the database and figure out that there is no differential expression were found for Os02g669000.
 ===Alignments and location of this gene===
-Give the information of genomic alignments of Oryza sativa Japonica (Rice) ›
+Give the information of genomic alignments of Oryza sativa Japonica (Rice):[[File: li-Os02g0669000-Fig6.png|right|thumb|200px|''genomic alignments of Oryza sativa Japonica (Rice). '']]
-To tell apart Os02g0669000 to other genes, we search on the Rice TOGO Browser and then find Os02g0669000 has 1 loci found in chromosome, this position is chr02 28045214-28049582.As is shown in the figure below:
+To tell apart Os02g0669000 to other genes, we search on the Rice TOGO Browser and then find Os02g0669000 has 1 loci found in chromosome, this position is chr02 28045214-28049582.As is shown in the figure below:[[File: li-Os02g0669000-Fig5.jpeg|right|thumb|200px|''The position of Os02g0669000 loci. '']]
 ==References==

@@ Line 31: / Line 31: @@
 ===Alignments and location of this gene===
 Give the information of genomic alignments of Oryza sativa Japonica (Rice) ›
-[[File: li-Os02g0669000-Fig6.jpeg|right|thumb|200px|''genomic alignments of Oryza sativa Japonica (Rice). '']]
+[[File: li-Os02g0669000-Fig6.png|right|thumb|200px|''genomic alignments of Oryza sativa Japonica (Rice). '']]
 To tell apart Os02g0669000 to other genes, we search on the Rice TOGO Browser and then find Os02g0669000 has 1 loci found in chromosome, this position is chr02 28045214-28049582.As is shown in the figure below:

@@ Line 29: / Line 29: @@
 [[File: li-Os02g0669000-Fig4.jpeg|right|thumb|200px|''HyperTree. '']]
    Search on all the database and figure out that there is no differential expression were found for Os02g669000.
-==Alignments and location of this gene==
+===Alignments and location of this gene===
 Give the information of genomic alignments of Oryza sativa Japonica (Rice) ›
-chromosome: IRGSP-1.0:2:27158293:27162781:-1(the onese with parenthesesare all exons)
+[[File: li-Os02g0669000-Fig6.jpeg|right|thumb|200px|''genomic alignments of Oryza sativa Japonica (Rice). '']]
 To tell apart Os02g0669000 to other genes, we search on the Rice TOGO Browser and then find Os02g0669000 has 1 loci found in chromosome, this position is chr02 28045214-28049582.As is shown in the figure below:

@@ Line 9: / Line 9: @@
 The top 20 coexpressed genes (in field leaf samples):
-[[File: li-Os02g0669000-Fig1.png||frame|caption|100px|''The top 20 coexpressed genes (in field leaf samples). '']]
+[[File: li-Os02g0669000-Fig1.png||right|thumb|200px|''The top 20 coexpressed genes (in field leaf samples). '']]
 Os02g0669000 co-expression analysis, find that it has homology with Arabidopsis, similiar to At3g18740: 60s ribosomal protein L30 (RPL 30C).

@@ Line 27: / Line 27: @@
 [[File: li-Os02g0669000-Fig2.jpeg|right|thumb|200px|''gene tree. '']]
 We also has the detail information about Os02g0669000’s co-expressed gene tree(HyperTree),which can be found in link: http://ricefrend.dna.affrc.go.jp/HyperTree/index.php?id=11509&rank=3&mr=7
-[[File: li-Os02g0669000-Fig4.png|right|thumb|200px|''HyperTree. '']]
+[[File: li-Os02g0669000-Fig4.jpeg|right|thumb|200px|''HyperTree. '']]
    Search on all the database and figure out that there is no differential expression were found for Os02g669000.
 ==Alignments and location of this gene==

@@ Line 25: / Line 25: @@
 Number of ambiguous: 0
 Number of gene split events: 6
-[[File: li-Os02g0669000-Fig3.jpeg|right|thumb|200px|''gene tree. '']]
+[[File: li-Os02g0669000-Fig2.jpeg|right|thumb|200px|''gene tree. '']]
 We also has the detail information about Os02g0669000’s co-expressed gene tree(HyperTree),which can be found in link: http://ricefrend.dna.affrc.go.jp/HyperTree/index.php?id=11509&rank=3&mr=7
 [[File: li-Os02g0669000-Fig4.png|right|thumb|200px|''HyperTree. '']]