Os02g0726700 - Revision history

Xysj1986 at 01:11, 22 March 2017

2017-03-22T01:11:31Z

192.168.72.52 at 06:48, 14 May 2015

2015-05-14T06:48:51Z

Gaoyuhao at 13:22, 6 June 2014

2014-06-06T13:22:40Z

Gaoyuhao at 13:18, 6 June 2014

2014-06-06T13:18:26Z

Gaoyuhao at 13:15, 6 June 2014

2014-06-06T13:15:39Z

Gaoyuhao at 12:58, 6 June 2014

2014-06-06T12:58:29Z

Gaoyuhao at 12:57, 6 June 2014

2014-06-06T12:57:12Z

124.16.129.48 at 19:22, 22 July 2012

2012-07-22T19:22:20Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os02g0726700| Description = Basic helix-loop-helix dimerisation region bHLH domain containing protein| Version = NM_001054528.1 GI:115448426 Gene..."

2012-06-25T02:51:22Z

Created page with "{{JaponicaGene| GeneName = Os02g0726700| Description = Basic helix-loop-helix dimerisation region bHLH domain containing protein| Version = NM_001054528.1 GI:115448426 Gene..."

New page

{{JaponicaGene|
GeneName = Os02g0726700|
Description = Basic helix-loop-helix dimerisation region bHLH domain containing protein|
Version = NM_001054528.1 GI:115448426 GeneID:4330593|
Length = 1936 bp|
Definition = Oryza sativa Japonica Group Os02g0726700, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
AP = Chromosome 2:31120147..31122082|
CDS = 31120423..31120583,31120671..31120848,31120955..31120993,31121072..31121167,31121247..31121314<br>,31121504..31121617,31121704..31122082|
GCID = <gbrowseImage1>
name=NC_008395:31120147..31122082
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008395:31120147..31122082
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggagatccgcagatcactgaggccactggacctggccaagcagcgcggccgcagcagcggcaatggcacggcggcggggagtgccgtcgacggcgcgtcgccggcaggttcggactcggaggagcacgtgctaccgggcggcgtcgggacgttcagcatcaggcacgcgtccggtactccgtcgagagaagaggccggtagccatggcggcgtcaggaggagtgcgttcgcatttgcacctgcgcttcatggcgccaggatggagaatgcacatgaaacaggaggaagatctgggagtagggctcaccgtgcgccgtcgacgatgtggcaagattctgccattgatcaaagatccataggccagacaccatatgaagcaacaagagcagagggaagaagtagcgccagcagcgccgatcagggacccagcactccgagatcaaagcattcagcaactgagcagagaaggaggaccaagataaatgacaggcttgaaatacttcgtgaactcctgccacacactgatcagaagagagacaaagcttctttcctttcggaggttattgaatacataaggtttttgcaagagaaagtccaaaagtatgaggaagccgatccagaaaggaatcacgaggattccaaatccatgccatgggcaaaagtctactatagatcatgctggagaaacacaaagaacaccagtcaagtccagggggaagatttgtcaccatccacacaggacatgaacaacgaacagtacggtcccaagcacatatcggcagcacaacctgctctcttcaacacacagagtgtaaccagtacaaccaccagttcctcccacatggcaacaggcacaccacaaaatttggaaaagaacagcacacccagcaatcagccaccatggctgagcatgtcaacaatgcgccaagagtctgaaccaggcaacaaaatgccgaacaagcatgagaaacagacccttcacgatgaaaaccatagtatttctagcgcttactctcaagggtctgttccttaa</cdnaseq>|
AA = <aaseq>MEIRRSLRPLDLAKQRGRSSGNGTAAGSAVDGASPAGSDSEEHV LPGGVGTFSIRHASGTPSREEAGSHGGVRRSAFAFAPALHGARMENAHETGGRSGSRA HRAPSTMWQDSAIDQRSIGQTPYEATRAEGRSSASSADQGPSTPRSKHSATEQRRRTK INDRLEILRELLPHTDQKRDKASFLSEVIEYIRFLQEKVQKYEEADPERNHEDSKSMP WAKVYYRSCWRNTKNTSQVQGEDLSPSTQDMNNEQYGPKHISAAQPALFNTQSVTSTT TSSSHMATGTPQNLEKNSTPSNQPPWLSMSTMRQESEPGNKMPNKHEKQTLHDENHSI SSAYSQGSVP</aaseq>|
DNA = <dnaseqindica>1500..1660#1235..1412#1090..1128#916..1011#769..836#466..579#1..379#atggagatccgcagatcactgaggccactggacctggccaagcagcgcggccgcagcagcggcaatggcacggcggcggggagtgccgtcgacggcgcgtcgccggcaggttcggactcggaggagcacgtgctaccgggcggcgtcgggacgttcagcatcaggcacgcgtccggtactccgtcgagagaagaggccggtagccatggcggcgtcaggaggagtgcgttcgcatttgcacctgcgcttcatggcgccaggatggagaatgcacatgaaacaggaggaagatctgggagtagggctcaccgtgcgccgtcgacgatgtggcaagattctgccattgatcaaagatccataggccagacaccatatgaaggttagtaccgcagttgtattgttgattctctagtctgtcacttcaattcaggcactgatggatttgatatatacatgtgcactcagcaacaagagcagagggaagaagtagcgccagcagcgccgatcagggacccagcactccgagatcaaagcattcagcaactgagcagagaaggaggaccaagataaatgacaggcaagctagtagaggtcaaacaccattttgaattattttctgcagagcaggaacaaaccaaccatgaagacgtagctagatagctcaacaagatatcatattagcagcatttaattccaagacaatttcatataagtatatggtgcaagaaatgtgttctaaaatgcaattcttcatgctctccttcaggcttgaaatacttcgtgaactcctgccacacactgatcagaagagagacaaagcttctttcctttcggaggtaaacagaatatcaattttggcactgtagtcagcaggctatattgcaatttctcccttgtgaagcattttgtttgcaggttattgaatacataaggtttttgcaagagaaagtccaaaagtatgaggaagccgatccagaaaggaatcacgaggattccaaatccatgccatgggtactatcatagccatgttagcatgttcatgacataattgtgcaacagtattcaccctctatttttttttcttggtaggcaaaagtctactatagatcatgctggagaaacacaaaggtaattccgtaaaataaaaacagcaactgaaagcgaatgcacaattcatcataatcatataccaatgatatgtacccatccttgtttcttgttcatggtctcacagaacaccagtcaagtccagggggaagatttgtcaccatccacacaggacatgaacaacgaacagtacggtcccaagcacatatcggcagcacaacctgctctcttcaacacacagagtgtaaccagtacaaccaccagttcctcccacatggcaacaggcacaccacaaaatttggaaagtaagtccatttcttatcacctttcaacagtcagaattcttgtaattaagaactagatccactaactttaatgtcttttaaacgcagagaacagcacacccagcaatcagccaccatggctgagcatgtcaacaatgcgccaagagtctgaaccaggcaacaaaatgccgaacaagcatgagaaacagacccttcacgatgaaaaccatagtatttctagcgcttactctcaagggtctgttccttaaccatttgttacttcaagactaaagttagcacaatatgtaactaacaggatactacttcaatttgcaacagattattcaacagattgacagaagctcttaaaaagtcaggactagatccatctcaagctaatatagctgtagagatcaacctggccaaacgagcaagagataatactagtgacaactcaaaggtatagagctttacaaagttgatttattcatgatgtttgaacatatagatcgtctgcttaataattattttgtacctttgtcctg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054528.1 RefSeq:Os02g0726700]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 2]]
[[Category:Chromosome 2]]

@@ Line 1: / Line 1: @@
-OsbHLH133 is a regulator of iron distribution between roots and shoots in Oryza sativa.
+The rice '''Os02g0726700''' was reported as '''''OsbHLH034''''' in 2006 <ref name="ref1" /> by researchers from the China. It is a member of bHLH transcription factor gene family.
 ==Annotated Information==
 ===Function===
-OsbHLH133 was found to be induced by Fe-deficiency conditions in Oryza sativa. Insertional inactivation of OsbHLH133 (bhlh133) resulted in growth retardation, with enhanced Fe concentration seen in shoots, and reduced Fe concentration in roots. Overexpression of OsbHLH133 had the opposite effect, that is resulted in an enhanced Fe concentration in roots and reduced Fe concentration in shoots and also in xylem sap. Microarray analysis showed that some of the genes encoding Fe-related functions were up-regulated under Fe-sufficient conditions, in bhlh133 mutant plants compared to wild-type plants. Significant differential expression of a number of signalling pathways, including calcium signalling, was also seen in bhlh133 plants compared to wild-type plants, independent of Fe conditions.
+* The basic/helix-loop-helix (bHLH) transcription factors and their homologs form a large family in plant and animal genomes.
+* rice bHLH proteins can potentially participate in a variety of combinatorial interactions, endowing them with the capacity to regulate a multitude of transcriptional programs.
-.RT-PCR analyses showed that the transcript abundance of OsbHLH133 was significantly induced by Fe deficiency in rice roots and slightly in leaves.
+* bHLHs represent key regulatory components in transcriptional networks controlling a number of biological processes.
-  [[File:pce2569_f1.gif]]
+* Plant bHLHs have been reported to function in light signaling, hormone signaling, wound and drought stress responses, symbiotic ammonium transport, shoot branching, root, fruit and flower development, et al. <ref name="ref1" /> <ref name="ref2" /> <ref name="ref3" />
 ===Expression===
-Please input expression information here.
+* Similar expression patterns suggest functional conservation between some rice bHLH genes and their close Arabidopsis homologs.
 ===Evolution===
-Please input evolution information here.
+* The studies of researchers indicate that the ancient bHLH gene family has likely expanded considerably during flowering plant evolution to include many relatively young members, allowing both the conservation and divergence of gene function.
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
-Please input related labs here.
+* Shanghai Jiao Tong University-Shanghai Institutes for Biological Sciences-Pennsylvania State University Joint Center for Life Sciences, Key Laboratory of Microbial Metabolism, Ministry of Education, School of Life Science and Biotechnology, Shanghai Jiao Tong University, Shanghai, People’s Republic of China, 200240
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

← Older revision		Revision as of 06:48, 14 May 2015
Line 29:		Line 29:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]
−	~~GeneName = Os02g0726700\|~~
−	~~Description = Basic helix-loop-helix dimerisation region bHLH domain containing protein\|~~
−	~~Version = NM_001054528.1 GI:115448426 GeneID:4330593\|~~
−	~~Length = 1936 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os02g0726700, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 2\|Chromosome 2]]\|~~
−	~~AP = Chromosome 2:31120147..31122082\|~~
−	~~CDS = 31120423..31120583,31120671..31120848,31120955..31120993,31121072..31121167,31121247..31121314<br>,31121504..31121617,31121704..31122082\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008395:31120147..31122082~~
−	~~source=RiceChromosome02~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008395:31120147..31122082~~
−	~~source=RiceChromosome02~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atggagatccgcagatcactgaggccactggacctggccaagcagcgcggccgcagcagcggcaatggcacggcggcggggagtgccgtcgacggcgcgtcgccggcaggttcggactcggaggagcacgtgctaccgggcggcgtcgggacgttcagcatcaggcacgcgtccggtactccgtcgagagaagaggccggtagccatggcggcgtcaggaggagtgcgttcgcatttgcacctgcgcttcatggcgccaggatggagaatgcacatgaaacaggaggaagatctgggagtagggctcaccgtgcgccgtcgacgatgtggcaagattctgccattgatcaaagatccataggccagacaccatatgaagcaacaagagcagagggaagaagtagcgccagcagcgccgatcagggacccagcactccgagatcaaagcattcagcaactgagcagagaaggaggaccaagataaatgacaggcttgaaatacttcgtgaactcctgccacacactgatcagaagagagacaaagcttctttcctttcggaggttattgaatacataaggtttttgcaagagaaagtccaaaagtatgaggaagccgatccagaaaggaatcacgaggattccaaatccatgccatgggcaaaagtctactatagatcatgctggagaaacacaaagaacaccagtcaagtccagggggaagatttgtcaccatccacacaggacatgaacaacgaacagtacggtcccaagcacatatcggcagcacaacctgctctcttcaacacacagagtgtaaccagtacaaccaccagttcctcccacatggcaacaggcacaccacaaaatttggaaaagaacagcacacccagcaatcagccaccatggctgagcatgtcaacaatgcgccaagagtctgaaccaggcaacaaaatgccgaacaagcatgagaaacagacccttcacgatgaaaaccatagtatttctagcgcttactctcaagggtctgttccttaa</cdnaseq>\|
−	AA = <aaseq>MEIRRSLRPLDLAKQRGRSSGNGTAAGSAVDGASPAGSDSEEHV LPGGVGTFSIRHASGTPSREEAGSHGGVRRSAFAFAPALHGARMENAHETGGRSGSRA HRAPSTMWQDSAIDQRSIGQTPYEATRAEGRSSASSADQGPSTPRSKHSATEQRRRTK INDRLEILRELLPHTDQKRDKASFLSEVIEYIRFLQEKVQKYEEADPERNHEDSKSMP WAKVYYRSCWRNTKNTSQVQGEDLSPSTQDMNNEQYGPKHISAAQPALFNTQSVTSTT TSSSHMATGTPQNLEKNSTPSNQPPWLSMSTMRQESEPGNKMPNKHEKQTLHDENHSI SSAYSQGSVP</aaseq>\|
−	DNA = <dnaseqindica>1500..1660#1235..1412#1090..1128#916..1011#769..836#466..579#1..379#atggagatccgcagatcactgaggccactggacctggccaagcagcgcggccgcagcagcggcaatggcacggcggcggggagtgccgtcgacggcgcgtcgccggcaggttcggactcggaggagcacgtgctaccgggcggcgtcgggacgttcagcatcaggcacgcgtccggtactccgtcgagagaagaggccggtagccatggcggcgtcaggaggagtgcgttcgcatttgcacctgcgcttcatggcgccaggatggagaatgcacatgaaacaggaggaagatctgggagtagggctcaccgtgcgccgtcgacgatgtggcaagattctgccattgatcaaagatccataggccagacaccatatgaaggttagtaccgcagttgtattgttgattctctagtctgtcacttcaattcaggcactgatggatttgatatatacatgtgcactcagcaacaagagcagagggaagaagtagcgccagcagcgccgatcagggacccagcactccgagatcaaagcattcagcaactgagcagagaaggaggaccaagataaatgacaggcaagctagtagaggtcaaacaccattttgaattattttctgcagagcaggaacaaaccaaccatgaagacgtagctagatagctcaacaagatatcatattagcagcatttaattccaagacaatttcatataagtatatggtgcaagaaatgtgttctaaaatgcaattcttcatgctctccttcaggcttgaaatacttcgtgaactcctgccacacactgatcagaagagagacaaagcttctttcctttcggaggtaaacagaatatcaattttggcactgtagtcagcaggctatattgcaatttctcccttgtgaagcattttgtttgcaggttattgaatacataaggtttttgcaagagaaagtccaaaagtatgaggaagccgatccagaaaggaatcacgaggattccaaatccatgccatgggtactatcatagccatgttagcatgttcatgacataattgtgcaacagtattcaccctctatttttttttcttggtaggcaaaagtctactatagatcatgctggagaaacacaaaggtaattccgtaaaataaaaacagcaactgaaagcgaatgcacaattcatcataatcatataccaatgatatgtacccatccttgtttcttgttcatggtctcacagaacaccagtcaagtccagggggaagatttgtcaccatccacacaggacatgaacaacgaacagtacggtcccaagcacatatcggcagcacaacctgctctcttcaacacacagagtgtaaccagtacaaccaccagttcctcccacatggcaacaggcacaccacaaaatttggaaagtaagtccatttcttatcacctttcaacagtcagaattcttgtaattaagaactagatccactaactttaatgtcttttaaacgcagagaacagcacacccagcaatcagccaccatggctgagcatgtcaacaatgcgccaagagtctgaaccaggcaacaaaatgccgaacaagcatgagaaacagacccttcacgatgaaaaccatagtatttctagcgcttactctcaagggtctgttccttaaccatttgttacttcaagactaaagttagcacaatatgtaactaacaggatactacttcaatttgcaacagattattcaacagattgacagaagctcttaaaaagtcaggactagatccatctcaagctaatatagctgtagagatcaacctggccaaacgagcaagagataatactagtgacaactcaaaggtatagagctttacaaagttgatttattcatgatgtttgaacatatagatcgtctgcttaataattattttgtacctttgtcctg</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054528.1 RefSeq:Os02g0726700]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 2]]~~
−	~~[[Category:~~Chromosome 2]]

@@ Line 7: / Line 7: @@
 .RT-PCR analyses showed that the transcript abundance of OsbHLH133 was significantly induced by Fe deficiency in rice roots and slightly in leaves.
    [[File:pce2569_f1.gif]]
 ===Expression===

@@ Line 6: / Line 6: @@
 .RT-PCR analyses showed that the transcript abundance of OsbHLH133 was significantly induced by Fe deficiency in rice roots and slightly in leaves.
+   [[File:pce2569_f1.gif]]
 ===Expression===

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+OsbHLH133 is a regulator of iron distribution between roots and shoots in Oryza sativa.
 ==Annotated Information==
 ===Function===
-gggggggggg[[File:pce2569_f1_thumb.gif]]
+OsbHLH133 was found to be induced by Fe-deficiency conditions in Oryza sativa. Insertional inactivation of OsbHLH133 (bhlh133) resulted in growth retardation, with enhanced Fe concentration seen in shoots, and reduced Fe concentration in roots. Overexpression of OsbHLH133 had the opposite effect, that is resulted in an enhanced Fe concentration in roots and reduced Fe concentration in shoots and also in xylem sap. Microarray analysis showed that some of the genes encoding Fe-related functions were up-regulated under Fe-sufficient conditions, in bhlh133 mutant plants compared to wild-type plants. Significant differential expression of a number of signalling pathways, including calcium signalling, was also seen in bhlh133 plants compared to wild-type plants, independent of Fe conditions.
 ===Expression===

← Older revision		Revision as of 19:22, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os02g0726700\|		GeneName = Os02g0726700\|