Os03g0128700 - Revision history

Rice2012: /* Structured Information */

2015-06-12T05:01:46Z

‎Structured Information

Zhangye: /* Knowledge Extension */

2015-01-05T17:03:00Z

‎Knowledge Extension

Zhangye at 16:58, 5 January 2015

2015-01-05T16:58:13Z

124.16.129.48 at 19:27, 22 July 2012

2012-07-22T19:27:35Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os03g0128700| Description = Calcium-dependent protein kinase, isoform 11 (EC 2.7.1.-) (CDPK 11)| Version = NM_001055377.1 GI:115450482 GeneID:433..."

2012-06-24T12:17:28Z

Created page with "{{JaponicaGene| GeneName = Os03g0128700| Description = Calcium-dependent protein kinase, isoform 11 (EC 2.7.1.-) (CDPK 11)| Version = NM_001055377.1 GI:115450482 GeneID:433..."

New page

{{JaponicaGene|
GeneName = Os03g0128700|
Description = Calcium-dependent protein kinase, isoform 11 (EC 2.7.1.-) (CDPK 11)|
Version = NM_001055377.1 GI:115450482 GeneID:4331490|
Length = 4430 bp|
Definition = Oryza sativa Japonica Group Os03g0128700, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:1603443..1607872|
CDS = 1604367..1605066,1605345..1605488,1605575..1605727,1605900..1606015,1606401..1606568<br>,1606654..1606878,1607375..1607497|
GCID = <gbrowseImage1>
name=NC_008396:1603443..1607872
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:1603443..1607872
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggggaatcagtgccagaacgggactcttgggagtgattaccacaatcggttcccaagggagcatgccgttgggtacgttcagggggatagctacttggacttgaagaagttcgatgatacttggcctgaggtgaacaacttcaagcctactgctgctagtattctcaggcgggggttggatcctacatctatcaatgtccttgggcggaagacagcggacctaagggagcattatatcattggtcggaagcttggtcagggccagtttggcacaacttacctctgtaccgagatcaatacagggtgtgagtatgcttgcaagaccatcccaaagcgcaagctcatcaccaaggaggatgtagaagatgtgcgccgtgagattcagataatgcaccatttgtcgggccacaagaatgttgttgcaatcaaggatgtctatgaggatgggcaagcggtgcacattgtgatggagctctgcgctggtggggagctctttgacaggattcaggagaaggggcattacagcgagcggaaggctgcagagcttataagaataattgtcagcattgtggctatgtgccattcgctcggggtgatgcaccgtgatcttaagccagaaaatttcctccttttggataaagatgatgatctgtcaataaaggcaatagattttggtctatccgtgttcttcaaaccaggtcaggttttcactgagctggttgggagtccatattatgttgctcctgaggtattgcacaaacgttatggaccagaatctgatgtgtggtcagctggagtgatactttacgttttgctgagtggagtgccaccattttgggcagagacacaacaaggaatatttgatgcagttctgaagggtcacattgattttcaatctgatccatggccaaagatatctgacagtgcaaaggatcttataagaaaaatgctctctcattgcccttcggagcgtttgaaggcccatgaagtgctaaggcatccttggatctgtgaaaatggagttgccactgatcaagctctggatcccagtgttatctctcggctcaaacaattctctgcaatgaacaagttaaagaagttggctctgagagtgatagctgagcgtctttcagaggaggagattgctgggttaagagaaatgttcaaggcagtggacacaaaaaatagaggtgtaatcactttcggtgagcttagagaaggtttaagaagatttggcgctgaatttaaggatacagagattggtgatataatggaagcggcacacaacgacaataatgtaacaatccattatgaagaatttattgctgcaactctacctcttaacaagatagaacgtgaggagcacctgctggcagcttttacatattttgacaaagatgggagtggttatatcacagttgacaagcttcaacgagcttgtggagaacataacatggaggattcactccttgaagagattatttcagaggttgatcaaaacaatgacggccaaattgactacgccgaatttgtagccatgatgcaaggcagcaacgttggactagggtggcaaacaatggaaagcagtttgaatgtagcattaagagacgcacctcaagtacattga</cdnaseq>|
AA = <aaseq>MGNQCQNGTLGSDYHNRFPREHAVGYVQGDSYLDLKKFDDTWPE VNNFKPTAASILRRGLDPTSINVLGRKTADLREHYIIGRKLGQGQFGTTYLCTEINTG CEYACKTIPKRKLITKEDVEDVRREIQIMHHLSGHKNVVAIKDVYEDGQAVHIVMELC AGGELFDRIQEKGHYSERKAAELIRIIVSIVAMCHSLGVMHRDLKPENFLLLDKDDDL SIKAIDFGLSVFFKPGQVFTELVGSPYYVAPEVLHKRYGPESDVWSAGVILYVLLSGV PPFWAETQQGIFDAVLKGHIDFQSDPWPKISDSAKDLIRKMLSHCPSERLKAHEVLRH PWICENGVATDQALDPSVISRLKQFSAMNKLKKLALRVIAERLSEEEIAGLREMFKAV DTKNRGVITFGELREGLRRFGAEFKDTEIGDIMEAAHNDNNVTIHYEEFIAATLPLNK IEREEHLLAAFTYFDKDGSGYITVDKLQRACGEHNMEDSLLEEIISEVDQNNDGQIDY AEFVAMMQGSNVGLGWQTMESSLNVALRDAPQVH</aaseq>|
DNA = <dnaseqindica>925..1624#1903..2046#2133..2285#2458..2573#2959..3126#3212..3436#3933..4055#tcttctctccgctctatttttttcatcctatcgattttgcagtttagccctcgaagaagcaaggatttcgagcccggtccctaggctcgatccggccgtgtcctttgctccgatcgagcgcgcgaggtctcgtaaggtccatcctgagcttgttgctgtggagtgcgcgattccgcgctcgatttcgtttcttccggcgcagatttcgtgttttttggcctagatttggcttgtgggtgaccgcctaggcgtttctcgcgtgtttcggctttttgtctgggatcgatttgtggctggatttgcttgttcctggctgcggagcttggatcttagcattagaaaccctcagattggggatttcctgccggaggaagctttttggaggagctgcctttgggaggaactcttccagttctgagggtttcggtgtttgttgctcgcctggctcgagaagaagctgggaaatctcgtattttagggcgggttctagtagatttcgtgtagtggagagcaaaaagtttgtgtggttttggtggtcaagtctggtggtggaagcccctcaggccggagatttcctccttccggtggacgaccaaaggagccgcccttggaaggaatttcttgccatcccagaggtttccacttcctcaccttggctaagtttaaaactttccgctgttttcccttgccgtgtagtaacaagtatgggttgctgatcaagtctttgttgtgaaaaatgtcaggttggggatttcctcacgcccaggaagccaagcaagggctgccttagcgaggaactcttccaattggacgggtttgcgcgtagcggtgcggctatataagtggaaatctgcatccctgggaaggatacaattgttttgaggctgggaactttggaattggtttgcataaggagttcttggaatggggaatcagtgccagaacgggactcttgggagtgattaccacaatcggttcccaagggagcatgccgttgggtacgttcagggggatagctacttggacttgaagaagttcgatgatacttggcctgaggtgaacaacttcaagcctactgctgctagtattctcaggcgggggttggatcctacatctatcaatgtccttgggcggaagacagcggacctaagggagcattatatcattggtcggaagcttggtcagggccagtttggcacaacttacctctgtaccgagatcaatacagggtgtgagtatgcttgcaagaccatcccaaagcgcaagctcatcaccaaggaggatgtagaagatgtgcgccgtgagattcagataatgcaccatttgtcgggccacaagaatgttgttgcaatcaaggatgtctatgaggatgggcaagcggtgcacattgtgatggagctctgcgctggtggggagctctttgacaggattcaggagaaggggcattacagcgagcggaaggctgcagagcttataagaataattgtcagcattgtggctatgtgccattcgctcggggtgatgcaccgtgatcttaagccagaaaatttcctccttttggataaagatgatgatctgtcaataaaggcaatagattttggtctatccgtgttcttcaaaccaggtatatgtcgcattttaatgcacttgtagtggtttatttttatttttagagagtaacatatcaacacataacgtgtatatgtctgctttgctgtatattctgtggatattatttgcatgccaccagaatcaagaccatcctaactatattctgttgtttatccatcttattcatcttccttaatagttcttgcaatttacatgtgtgaagtgttgtggatttacaaaatagtttttgacttctatctttacttaaatttggtgttttaaaatttgcaggtcaggttttcactgagctggttgggagtccatattatgttgctcctgaggtattgcacaaacgttatggaccagaatctgatgtgtggtcagctggagtgatactttacgttttgctgagtggagtgccaccattttgggcaggtgggttatctaaattctcaggtgttaaatttgaatctaatatcattctggaattgcaaagctgatcacatcctatccttttccagagacacaacaaggaatatttgatgcagttctgaagggtcacattgattttcaatctgatccatggccaaagatatctgacagtgcaaaggatcttataagaaaaatgctctctcattgcccttcggagcgtttgaaggcccatgaagtgctaagtaagtatatttgacctatttcttcacataaattagttgcccttttgtttcatcgcgaatagctctgcattttgttcataacatagtttgacgcatggttttagttttcactaattatctaagagctacaaaccttttgatatgttgactgatatatatatcttattgtcagggcatccttggatctgtgaaaatggagttgccactgatcaagctctggatcccagtgttatctctcggctcaaacaattctctgcaatgaacaagttaaagaagttggctctgagagtgagtgcttcatattcttgcatgcttccatattgctgctatgatatttgctatcatatcatcttaatcgagtatccccaattggccttcagcccttcactatatccattcgcatgccatgccatattgtcattctttggatccctatgatagtaaaataagttatttttttggtaaatgtcaactttgggagctgctctaggctgatcatctgattttgtggcaatatggaaaacaagtttttaggttgcgatattcaattatgtggtatgcacattaacatgccgcaattcagcctgtagcactatttcgttgcatgtcctactgctggctacatctgtgaaccatatgccatttcttttttctgacacttacgtgcttccaggtgatagctgagcgtctttcagaggaggagattgctgggttaagagaaatgttcaaggcagtggacacaaaaaatagaggtgtaatcactttcggtgagcttagagaaggtttaagaagatttggcgctgaatttaaggatacagagattggtgatataatggaagcggtaagtaggtgcaagaccacaaattgttggttagatggtgctctctttctttgagatcttgatttaaactctgaaacttcttcaggcacacaacgacaataatgtaacaatccattatgaagaatttattgctgcaactctacctcttaacaagatagaacgtgaggagcacctgctggcagcttttacatattttgacaaagatgggagtggttatatcacagttgacaagcttcaacgagcttgtggagaacataacatggaggattcactccttgaagagattatttcagaggttgatcaaaacaatgtaagttgatttcactatacaatatccaagatttattttttagtgactattgacttgtaaccaccgtattgagaataatttcagcataacactctgcgctttaaacgaaagcatacactcttggacatgttaggatttttttagacttctagtgtctctgctggtcagctggtacatcggtagtttgcgttgtagtctttaatcctaatgacattccctgtaaaattatttatttgattttactggcatctgtcagcgtcacatctaacaccaaacttgttcaacaacagaacgataacatgtacacggttgagggcagtctcttctacagatccatttgtcctgggtcctcatgctttagaacttagcattagcatgtttttttttccagggatagtatttcaaaagaaaaaagaaggcgatgattttgattcgtcaaccctgaaaatctttctcgagttgaatctaatgaactggtcttgtcattctttttcaggacggccaaattgactacgccgaatttgtagccatgatgcaaggcagcaacgttggactagggtggcaaacaatggaaagcagtttgaatgtagcattaagagacgcacctcaagtacattgatgcacgaatgtatagattttgttctcttctcttgtccattcattcttcactacccaattcgggtctgtgacttgtatgagaagagatcaagtcaattcatttagttggtatttattccaagcaagtgtgagttgataagtagcgtagtctctatggagacaatagcatgagcatatagtggtggtatattggttgatgtagttgcaaggccgcctagcaattaaaaaagaacccaaaagaggtgcattcgctttgttggttgttctttcaacgacctgtattacgcaatgaaagtcgtcatgtttgcgtaactctaatctcaatgcttgcgttcctataatatctttaaagattataatattacatttccatgtc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055377.1 RefSeq:Os03g0128700]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

@@ Line 54: / Line 54: @@
 [[File: function of CDPKs.jpg|right|thumb|300px|'''Figure 5.Summary of the function of CDPKs in ABA and abiotic stress responses, as reported by several authors（from reference <ref name="ref5"/>).'']]
 *In rice, the CDPKs constitute a large family of 29 genes<ref name="ref3"/>.
-*CDPK genes (''OsCPK1-29'') contain multiple stress-responsive cis-elements in the promoter region (1 kb) upstream of genes. Analysis of the information extracted from the Rice Expression Database indicates that 11 of the CDPK genes are regulated by chilling temperature, dehydration, salt, rice blast infection and chitin treatment. RT-PCR and RNA gel blot hybridization were performed in this study to detect the expression 19 of the CDPK genes. Twelve CDPK genes exhibited cultivar- and tissue-specific expression; four CDPK genes (''OsCPK6'', ''OsCPK13'', ''OsCPK17'' and ''OsCPK25'') were induced by chilling temperature, dehydration and salt stresses in the rice seedlings. While ''OsCPK13'' (''OsCDPK7'')<ref name="ref2"/> was already known to be inducible by chilling temperature and high salt, this is the first report that the other three genes are stress-regulated. ''OsCPK6'' and ''OsCPK25'' are up-regulated by dehydration and heat shock, respectively, while ''OsCPK17'' is down-regulated by chilling temperature, dehydration and high salt stresses. Based on this evidence, rice CDPK genes may be important components in the signal transduction pathways for stress responses<ref name="ref2"/><ref name="ref6"/>.
+*CDPK genes (''OsCPK1-29'') contain multiple stress-responsive cis-elements in the promoter region (1 kb) upstream of genes. Analysis of the information extracted from the Rice Expression Database indicates that 11 of the CDPK genes are regulated by chilling temperature, dehydration, salt, rice blast infection and chitin treatment. RT-PCR and RNA gel blot hybridization were performed in this study to detect the expression 19 of the CDPK genes. Twelve CDPK genes exhibited cultivar- and tissue-specific expression; four CDPK genes (''OsCPK6'', ''OsCPK13'', ''OsCPK17'' and ''OsCPK25'') were induced by chilling temperature, dehydration and salt stresses in the rice seedlings. While ''OsCPK13'' (''OsCDPK7'') was already known to be inducible by chilling temperature and high salt, this is the first report that the other three genes are stress-regulated. ''OsCPK6'' and ''OsCPK25'' are up-regulated by dehydration and heat shock, respectively, while ''OsCPK17'' is down-regulated by chilling temperature, dehydration and high salt stresses. Based on this evidence, rice CDPK genes may be important components in the signal transduction pathways for stress responses<ref name="ref2"/><ref name="ref6"/>.
 *Three major classes of Ca<sup>2+</sup>-binding proteins have been characterized in higher plants: calciumdependent protein kinases (CDPKs), calmodulins (CaMs) and CaM-like proteins, and calcineurin B-like proteins<ref name="ref6"/>.

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+As a calcium-dependent protein kinase gene in rice, ''OsCDPK13'' (encoded by ''OsCPK7'') is induced by cold and gibberellin in rice leaf sheath<ref name="ref1"/>.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+*''OsCDPK13'' may catalyze an important phosphorylation event in signaling in rice seedlings under cold stress conditions and in response to GA<ref name="ref1"/>.
 ===Expression===
-Please input expression information here.
+The expression of ''OsCDPK13''<ref name="ref1"/>：
 ===Evolution===
-Please input evolution information here.
+[[File: OsCPK21 Phylogenetic1.jpg|left|thumb|200px|'''Figure 1.'''''Phylogenetic relationships between CDPKs from rice and Arabidopsis.(from reference <ref name="ref2"/>).'']]
-You can also add sub-section(s) at will.
+*The subcellular localization of each CDPK and the phenotypes of overexpression (OX) or knockout or knockdown (KO) lines are described. Red letters, ''Arabidopsis'' CDPKs; green letters, rice CDPKs; P, phosphorylation; ABF, ABA-responsive element binding factor; HSP1, a heat shock protein; OST1, open stomata 1 protein kinase(Fig. 5)<ref name="ref5"/>.
 ==Labs working on this gene==
-Please input related labs here.
+*National Institute of Agrobiological Sciences, Tsukuba 305-8602, Japan
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==

← Older revision		Revision as of 19:27, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os03g0128700\|		GeneName = Os03g0128700\|

@@ Line 88: / Line 88: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]