Os03g0272300 - Revision history

Rice2012: /* Structured Information */

2015-06-12T05:39:28Z

‎Structured Information

潘文波 at 16:18, 28 May 2014

2014-05-28T16:18:55Z

124.16.129.48 at 19:32, 22 July 2012

2012-07-22T19:32:54Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os03g0272300| Description = Zinc finger, RING-type domain containing protein| Version = NM_001056231.1 GI:115452190 GeneID:4332396| Length = 358..."

2012-06-24T12:31:59Z

Created page with "{{JaponicaGene| GeneName = Os03g0272300| Description = Zinc finger, RING-type domain containing protein| Version = NM_001056231.1 GI:115452190 GeneID:4332396| Length = 358..."

New page

{{JaponicaGene|
GeneName = Os03g0272300|
Description = Zinc finger, RING-type domain containing protein|
Version = NM_001056231.1 GI:115452190 GeneID:4332396|
Length = 3582 bp|
Definition = Oryza sativa Japonica Group Os03g0272300, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:9183459..9187040|
CDS = 9184249..9184296,9184389..9184617,9184706..9184841,9185005..9185053,9185680..9185805<br>,9186560..9186673|
GCID = <gbrowseImage1>
name=NC_008396:9183459..9187040
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:9183459..9187040
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgttgttcatggtactgaactcacaccagatgtctccgaactttttggtttggctggttttgggtgtgttcctaatggccaccagcctaaggatgtacgccacatgccagcagctccaagcgcaggcgcaagctcacgctgcagctgccaacggcttccttggacacactgagctgcgggtgcatgtcccgccgaccatagctctcgccacacgaggccgtttgcagagccttaggctccaacttgcgctacttgaccgcgagttcgatgatttagattatgatgcccttagggccttggatgcagacaatagccctcatgctccttcgatgagtgaagaagaaataaatgctcttcctgtattcaaatacaaggttcaggcacatcagggaagtgcctctttccgaaaaagtgatggaccatctcaaccatctgtttcttctactgaatctggcaatgagaaaaagcaggatcgtttcaaggctgatgcaactgacaacaccctggaggatgagttgacatgcagtgtttgcttagaacaagtcgttgtgggtgatctattgagaagcctaccatgcctgcaccagtttcatgcaaactgcatcgatccatggttgcgccaacagggaacatgcccagtttgcaagcaccgtgtaagcgatgggtggcatggtgaagcagatgcttctaacatggtataa</cdnaseq>|
AA = <aaseq>MLFMVLNSHQMSPNFLVWLVLGVFLMATSLRMYATCQQLQAQAQ AHAAAANGFLGHTELRVHVPPTIALATRGRLQSLRLQLALLDREFDDLDYDALRALDA DNSPHAPSMSEEEINALPVFKYKVQAHQGSASFRKSDGPSQPSVSSTESGNEKKQDRF KADATDNTLEDELTCSVCLEQVVVGDLLRSLPCLHQFHANCIDPWLRQQGTCPVCKHR VSDGWHGEADASNMV</aaseq>|
DNA = <dnaseqindica>791..838#931..1159#1248..1383#1547..1595#2222..2347#3102..3215#actgctcgctctcgttttccccatccgcaccggctgctcctcgtcgcgccgacgcctccgcgcgccagcgaatcgccgcctcgagaggcccctcgtcgccgatcaggtgagtgcccctcctcgagagtcacgctcgttactcgattccgcggctgtttcaagatcaggcaggccctagaatctgggcgaaggttctcttgacttctggtagccttcgggggtttatctgggcgtttcccgcgttgaggcgtcatggacatgggagccgtgggggattttctaggtagggttttggttggggcgtcgctttcctcatattttgtcggtggctttgctgggcttcaggggcgtggcctcgtcgagtttttttgttcctcggaggggcggcaaggaggcggatttggagcaattcgtaagactagtggtggtggtggtggtggtggctggttggcgccatgagcttcgtgttccgggggagcagaggtgacatcgaggccggaggcttcccggggttcgccccggagcgccgcgccatggtgagcgtttctgcttaaatgtaggttttggcatcctaaagtagatctttttttgttatgaatttctgactcccatctgtgtgggggggcttgtatgcagcggattcatgcgggtggtcggccggtgaacagcaacctggcttttcttgtcactggtaatgtgggcatgccctttgtactaccgatattattaagctgtaaaaaatatcgattttctagttaatgcgatctattattctttttgggcagttcttatgttgttcatggtactgaactcacaccagatgtctccgaactttttggtaagttatcaattgatggtatgtattatgcttatatagcttgatggagaaatttcatgatttgtcgggttgcgcggaattgtctcttgtaggtttggctggttttgggtgtgttcctaatggccaccagcctaaggatgtacgccacatgccagcagctccaagcgcaggcgcaagctcacgctgcagctgccaacggcttccttggacacactgagctgcgggtgcatgtcccgccgaccatagctctcgccacacgaggccgtttgcagagccttaggctccaacttgcgctacttgaccgcgagttcgatgatttaggtgatacactttattcacttaggttaattcatatactgcttcttactctcctgcaagcattacattgtagctgatgttttgcttgcagattatgatgcccttagggccttggatgcagacaatagccctcatgctccttcgatgagtgaagaagaaataaatgctcttcctgtattcaaatacaaggttcaggcacatcagggaagtgcctctttccgaaaaaggtaagatgtattatccttttggctacattttttagctggcatagcaaacgcatgataagtctacaactgccttccatctctgataagtaaccaaccatataattccgaatttgtctactttgtatgggatgtaactaaccatttaattcttttgattctatagtgatggaccatctcaaccatctgtttcttctactgaatctggcaatgaggtaataaataaatactgacatgattatgaagaggttattctttgaatggcatctactgttattgtttgcataggcatgttgacatcctggcatgactaagataggagcatagaatgtgccatctatgtgttctttagcttgtattgatggaaatcattgagcgttactccctccgtcaacaaatataaaggattctaggtggtttagcagaatttaaggtcgaggtgaaattacttcgatgctgctagcagttttcttgattgggaaatatcacgcctagcggtgcaaccatcagtgagcaataaatacagtggttggatggatttggatagtagtactacaaaatctcttatatttgtggacatattttgaaccccaaaatccattatatttgtggaaagagtacttggttactttgcggttatttcatattgtggtggtatttcttagaattaaaatgcttttttgatgttcactatagtcaaccgtggtagctccataacaatcacaaagttgatgcttacacttttatttgtctattactcagcatgcctagaattacaatcagctgtgctgtttggtctggattatccttgttctagtgacttgttttttttgctgtgtagaaaaagcaggatcgtttcaaggctgatgcaactgacaacaccctggaggatgagttgacatgcagtgtttgcttagaacaagtcgttgtgggtgatctattgagaagcctaccatgcctgcaccaggtaatcattatactagaattatcttttttttagacatgtatactagaatcatcttgagcttgttttctttgtatgacagcaatagcaggctttatttcctagttatatctgctgtgctatgatcatggtgcctgttagcgtgttatatagtaactgtcctgacattttgttaaccaaatcccaaaacatgctaggaaaccactatatttgatgccatttgcaatttatgtgtgtttagtgaaaaagcaaagggaaaacttttgcatcatttcctatagctatcgtgtttcggaaaggaattgtttctttttccagtatgctaaatgctaagtatcttactctctcctgtttctgtaaggtgtggttcgagtgtttgactgtgatggtctttgatgttgaaccttggccactacacaaaatacgtgatctgtgcttggtttggctgcttaatcttgtattcaaatttgtaccggtctgagttccaaatatgtcatatatgctcacaatttttagtaaaatttaaatttgaatgaccatagccacatcaatgacaactatatactgtgttttgttatgttcgagttttcatagtgatacgatttatcctatatgagtgaaactatcatacactggctttttgctgttgtctttcaagtttttagctttccatcgaaggattgacattggtgctattagttttttgtgtcatgaggtgggactgcaaggtttacttactttcccacttgttttgcagtttcatgcaaactgcatcgatccatggttgcgccaacagggaacatgcccagtttgcaagcaccgtgtaagcgatgggtggcatggtgaagcagatgcttctaacatggtataagctgctgggagtggccagcaggtcttaagctaaaactactgacttaacccacggaatgaggattagctgtttagtcttgaggagtgtttttgtacataaaaaaacgttcacttctctgtgatgtttatgcatcaaaaggttgtgatatttttggttgacctgtaccctgttcagtatgaactcacatacaatcctttttactctgtttccgtggggaaattggcgtattatgggtgtttaaggctgaagatcagtagaggatttaagatccaagagtagtggtctggtctctattagtcttaagtaaaaatgatcttaactgttagtattatcacaagtaaaaaggagaaactgatttatgagttct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001056231.1 RefSeq:Os03g0272300]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+OsSDIR1 is a functional E3 ubiquitin ligase which plays crucial roles in the plant response to abiotic stress like  drought and NaCl.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+[[File:11103 2011 9775 Fig5 HTML.gif|right|thumb|350px| ''35S::OsSDIR1 can rescue the drought sensitivity of the Arabidopsis sdir1-1 mutant plants. '']]
 ===Expression===
-Please input expression information here.
+[[File:11103 2011 9775 Fig2 HTML.gif|left|thumb|350px|''Tissue expression pattern of OsSDIR1.'' ]]
 ===Evolution===
-Please input evolution information here.
+It was found that the SDIR1 protein is plant specific, and homologs could only be detected in plant species rather than in other organisms. SDIR1 homologs were found both in mono- and dicotyledonous plants. Only one rice homolog composed of 280 amino acids with 69% identity and 76% similarity to Arabidopsis SDIR1 was identified. It is interesting that four homologs were detected in the EST database from grape (Vitis vinifera), with identities of 72, 70, 68 and 57%. SDIR1 homologs all contain two putative transmembrane domains at the N-terminus and a C3H2C3 RING finger at the C-terminus of the protein.
+[[File:11103 2011 9775 Fig1 HTML.gif|''Alignment of peptide sequences of plant SDIR1 homologs. Amino acid sequence analysis of Arabidopsis SDIR1 with putative homologous proteins from V. vinifera (CBI31650.3), Glycine max (ACU20874.1), O. sativa (ABF95226.1), Z. mays (NP_001131833), and S. bicolor (XP_002468109.1).'']]
 ==Labs working on this gene==
-Please input related labs here.
+'''XieQi'''.    State Key Laboratory of Plant Genomics, National Center
 ==References==
-Please input cited references here.
+.Gao T1, Wu Y, Zhang Y. et al. OsSDIR1 overexpression greatly improves drought tolerance in transgenic rice.Plant Mol Biol. 2011 May;76(1-2):145-56. doi: 10.1007/s11103-011-9775-z
 ==Structured Information==

← Older revision		Revision as of 19:32, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os03g0272300\|		GeneName = Os03g0272300\|

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 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]