Os03g0308100 - Revision history

192.168.72.52: /* Structured Information */

2015-06-12T05:48:00Z

‎Structured Information

Littlescrew: /* Annotated Information */

2015-03-20T13:34:32Z

‎Annotated Information

Littlescrew: /* Labs working on this gene */

2015-03-20T13:22:23Z

‎Labs working on this gene

Littlescrew: /* References */

2015-03-20T13:20:03Z

‎References

Littlescrew: /* Annotated Information */

2015-03-20T13:11:38Z

‎Annotated Information

124.16.129.48 at 19:34, 22 July 2012

2012-07-22T19:34:11Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os03g0308100| Description = Peptidase S14, ClpP family protein| Version = NM_001056437.2 GI:297600815 GeneID:4332615| Length = 2967 bp| Definit..."

2012-06-24T12:35:31Z

Created page with "{{JaponicaGene| GeneName = Os03g0308100| Description = Peptidase S14, ClpP family protein| Version = NM_001056437.2 GI:297600815 GeneID:4332615| Length = 2967 bp| Definit..."

New page

{{JaponicaGene|
GeneName = Os03g0308100|
Description = Peptidase S14, ClpP family protein|
Version = NM_001056437.2 GI:297600815 GeneID:4332615|
Length = 2967 bp|
Definition = Oryza sativa Japonica Group Os03g0308100, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:11017466..11020432|
CDS = 11017711..11017908,11018127..11018215,11018308..11018342,11018998..11019070,11019153..11019198<br>,11019648..11019740,11019822..11019945,11020065..11020154,11020238..11020338<br>|
GCID = <gbrowseImage1>
name=NC_008396:11017466..11020432
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:11017466..11020432
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgaccaccaccaccaccccctcctcctctctcaccgcccctctcctccgcccgagctcgaacgcgaaccccgccccgagatctctgccgctcctcaggagccggaggtgcgctcgggccgtggcgaccgccgccgccgccgctggccacggggccgctcatcagaggagcgggatttggtcgatcagggatgatttggtggtgccgaggtcgccctacttccctgtggagtatgcgtcggggcaggaacgcgggccatcgcccatggtgatggagcggttccagagcgtcgtcagccagctcttccagcacaggattatccggtgtggtggacccgtggaggatgatatggcgaacatcatcgttgcccagctgctatatctcgatgccatcgatcctaacaaggatatcattatgtatgtgaattctcctggaggatcagtgacagctgggatggccatattcgacacgatgaagcatatcagacctgatgtttccacagtttgtattggacttgctgcaagtatgggagcttttctgcttagtgctgggacaaaagggaagcgatacagcttacctaactcaagaataatgatccatcaacctctcggaggagcccaaggacaagagactgatcttgagatccaggctaatgagatgctgcatcacaaggctaacctgaatggatacctagcataccacactgggcagcccctagataagatcaacgtagatactgaccgtgattacttcatgagcgcgaaggaggcaaaggagtatggtctaattgatggagttatcatgaatccccttaaagcccttcaaccgcttcctgcttctagttag</cdnaseq>|
AA = <aaseq>MATTTTTPSSSLTAPLLRPSSNANPAPRSLPLLRSRRCARAVAT AAAAAGHGAAHQRSGIWSIRDDLVVPRSPYFPVEYASGQERGPSPMVMERFQSVVSQL FQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMK HIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQA NEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVIMNPLKALQ PLPASS</aaseq>|
DNA = <dnaseqindica>2525..2722#2218..2306#2091..2125#1363..1435#1235..1280#693..785#488..611#279..368#95..195#acacactattctctcttcttcttaccaccctctcccggataagaggcgcaaccaaagcccccaccctcgcccaaaacccccacgagccgcggccatggcgaccaccaccaccaccccctcctcctctctcaccgcccctctcctccgcccgagctcgaacgcgaaccccgccccgagatctctgccgctcctcaggttcactcccctcttccccctccctcctcactctactctgtcgtggctccactcgctctaccctaactgactcggtcttgcaggagccggaggtgcgctcgggccgtggcgaccgccgccgccgccgctggccacggggccgctcatcagaggagcgggatttggtcgatcaggtgggggggggggttgattttgtgacgaaccatttgtagctctgcatcgtctggttgggggagggttgggtggggatgcgagggagctgatgatgctgtggttgttgtgtgtttcgtagggatgatttggtggtgccgaggtcgccctacttccctgtggagtatgcgtcggggcaggaacgcgggccatcgcccatggtgatggagcggttccagagcgtcgtcagccagctcttccagcacgtacgggagcactagattgttgcacaagtttatttgtggagggttctgtgtgctgtctgactctgtgtgattgtggaacagaggattatccggtgtggtggacccgtggaggatgatatggcgaacatcatcgttgcccagctgctatatctcgatgccatcgatcctaacaaggtgaaaatgatgaataagacgctatccgacatccaattcctatttcctataccaatagctgccaaagctttgttacgaactgcttactctaaaaatactgaggcgatgaagggagtggtgctcactgtatttacaattttacatgaactatatggtgtcttgttttaatggatgattgttgttaatccccagataaaatggtccttttatctgtcaatactcaataccagacactaaagtaccattgctactcactttgggttatatatgagtccttgttagtcctagcttaggctgtgattcagttatgtagttgtgacctcaaaccttatggtgaggcttgtattgcgatttcatctaccaggacctgattccatggcaccatatattcatgatttcgtacttacattcagtactcgattcttgacttcctctcaacattcctgtaggatatcattatgtatgtgaattctcctggaggatcagtgacagctggtaataactcatccattttttttcatagctccatctcactcttggaacatttgtttcacaccaaactgcattttgtgtttagggatggccatattcgacacgatgaagcatatcagacctgatgtttccacagtttgtattggacttgctgcaaggtatttagtactgaaaaactgatatccttaattggcaattgatttggatttgtgacgctctgcaatttatgcatcttataatgtttaattctttagcattctgttcaattattcaagtaagggtttcagttgctatattctggtcaacatgtaaacatgcacctgtttccagttgtatatcccgcctaattccttctcctttcataatgtgggaagcacaccaaatcattgattgtatcaggcatgttctattcagtataatcagcctcaatctaggattttgggttgactgagatcaaattttgtgctgcgcatgttagcaaagaagctttgtaccctcatacctccttaatcaaaatataatttttcaaactttatgtttgtgagaatccatatggatgttgataacaggagagtttcttcatttcatgtactttatcaatgtttagccaacaatgcaaattcaggagtgcttatcagtattccaggcacacagtttattagtaaaacatgataactgttcagctgcaaatctgtaaccatttctttctcattgtacttttggaatgctctcttttagctatccatcttgccttaagttgcattgatttcggttatgcactcattttcactgttttgtttccctttttggcagtatgggagcttttctgcttagtgctgggacaaaaggtaattgagtgattgttaatgcaagtactacatttattctacaactagactgatctgaatccttgaatactgtacttgtgaatgtaacacagggaagcgatacagcttacctaactcaagaataatgatccatcaacctctcggaggagcccaaggacaagagactgatcttgagatccaggtaaatccacaaagttaaattgtgtttttatcaagatcaggacgacatctcaatagcaaataattaaccatatcattgtttctctcttgccggtatatggttcgatctacatgaaatacatttatttccacaagcgaatagcaactccgctggctttctattgttacttgtatcaccagaagatttttctgtcactgattttccattatttcttttaggctaatgagatgctgcatcacaaggctaacctgaatggatacctagcataccacactgggcagcccctagataagatcaacgtagatactgaccgtgattacttcatgagcgcgaaggaggcaaaggagtatggtctaattgatggagttatcatgaatccccttaaagcccttcaaccgcttcctgcttctagttagccatggagtgctcaatctccacggagcattttttggttatcttttagaactgttattgcatccactgtttttattagcttggcaagatagttttgcgattccacaagcaaccacatcctgaggcttcaaagtttgtacaatacagatgtactactaggaggatatcttctgcgatgaatattgcaacttatttgatgtactattaggaggatatcttctgcgatgaatattgcaacttatttgat</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001056437.2 RefSeq:Os03g0308100]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

@@ Line 2: / Line 2: @@
 ==Annotated Information==
-OsClpP5 encodes a protein which share 92 % identity to the P5 subunit (AtClpP5) of the ATP-dependent caseinolytic protease from Arabidopsis<ref name="ref1" />. Containing nine exons, OsClpP5 locates in pale-yellow-leaf–variegated (pyl-v) allele in chromosome 3 A is commonly the transcription start site that upstream of 94-bp of the start codon in OsClpP5 in T-65.
+OsClpP5 encodes a protein which share 92 % identity to the P5 subunit (AtClpP5) of the ATP-dependent caseinolytic protease from Arabidopsis<ref name="ref1" />. Containing nine exons, OsClpP5 locates in pale-yellow-leaf–variegated (pyl-v) allele in chromosome 3(Figure 1)[[File:clpp.jpg|right|thumb|430px|'''Figure 1.''' ''Characterization of the pale-yellow-leaf–variegated (pyl-v) allele. <ref name="ref1" />.'']]. A is commonly the transcription start site that upstream of 94-bp of the start codon in OsClpP5 in T-65.
-Pyl gene is indispensable for the growth of the plant. The phenotypes are shown as Figure 2 <ref name="ref2" />.
+Pyl gene is indispensable for the growth of the plant. The phenotypes are shown as Figure 2 [[File:clpp5.jpg|right|thumb|430px|'''Figure 1.''' ''Phenotypes of pale-yellow-leaf variegated (pyl-v) (a), pyl-stable (pyl-stb) (b), pyl-stb treated with 5-azacytidine (5-azaC) (c).<ref name="ref2" />. '']].
 ===Function===
 Please input function information here.

@@ Line 16: / Line 16: @@
 ==Labs working on this gene==
-Please input related labs here.
+* National Institute for Basic Biology, Okazaki, Japan
 ==References==

@@ Line 19: / Line 19: @@
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==

@@ Line 2: / Line 2: @@
 ==Annotated Information==
 ===Function===
 Please input function information here.

← Older revision		Revision as of 19:34, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os03g0308100\|		GeneName = Os03g0308100\|

@@ Line 33: / Line 33: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]