Os03g0395000 - Revision history

192.168.72.52: /* Structured Information */

2015-06-12T05:53:48Z

‎Structured Information

Shijc at 13:46, 27 December 2014

2014-12-27T13:46:59Z

124.16.129.48 at 19:36, 22 July 2012

2012-07-22T19:36:42Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os03g0395000| Description = Similar to Heme oxygenase 2 (Fragment)| Version = NM_001056825.1 GI:115453378 GeneID:4333033| Length = 3360 bp| Def..."

2012-06-24T12:42:06Z

Created page with "{{JaponicaGene| GeneName = Os03g0395000| Description = Similar to Heme oxygenase 2 (Fragment)| Version = NM_001056825.1 GI:115453378 GeneID:4333033| Length = 3360 bp| Def..."

New page

{{JaponicaGene|
GeneName = Os03g0395000|
Description = Similar to Heme oxygenase 2 (Fragment)|
Version = NM_001056825.1 GI:115453378 GeneID:4333033|
Length = 3360 bp|
Definition = Oryza sativa Japonica Group Os03g0395000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:16475031..16478390|
CDS = 16475569..16475661,16475774..16475881,16476725..16476948,16477781..16478348|
GCID = <gbrowseImage1>
name=NC_008396:16475031..16478390
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:16475031..16478390
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgctcgccgccgccgtcgccgcctcggcggtcgtgccgccgcggccgcctcctccgccgccgcggagagcgcggcccttgcgctcctttactggactaatactaacgagggacctagcagccctaacggtggcccgctgcgctccctcccctcctgcccccgcggcggaggcggaggcggaggcggtggcggtggatgaggcgccgccagcgaagccgcggccgcggcggtacccgaggcagtaccccggcgaggcggtgggcgtcgccgaggagatgcggttcgtcgccatgcgcctccggaaccccaagcggaccaccctcaagatggacgatacgggggccgaggaggaggtgggcgatggcgtcagtgaggatgcgtcggcgtcagaggaggaggaggaggaggaggacgacgacgacgtggttgaggaggaggaggagggagcggggttggagggggagtggatgccgagcatggaggggttcgtcaagtacctggtggacagcaagctcgtcttcgacaccgtcgagcggatcgtagccgagtccaccgacgtcgcctatgtttacttcaggaaaagtggtctggaacgctcagctagaattacaaaagatttggagtggtttggagggcaaggaattgcagtaccagagccaagtactgctggatcaacatatgcaacttatctgactgaacttgctgagagcaatgccccagccttcctttcccactattacaatatttattttgcacatacaactggaggggtggctataggtaacaagatatccaagaaaattttggaaggaagggagctagagttttacaaatgggattctgatgtagaacttttgctaaaagataccagggagaagcttaacgaacttagcaagcattggtctcggaaggacaggaacttgtgcttgaaagaagctgcaaaatgtttccagcatttggggcggattgttcgcttaatcatcttatag</cdnaseq>|
AA = <aaseq>MPLAAAVAASAVVPPRPPPPPPRRARPLRSFTGLILTRDLAALT VARCAPSPPAPAAEAEAEAVAVDEAPPAKPRPRRYPRQYPGEAVGVAEEMRFVAMRLR NPKRTTLKMDDTGAEEEVGDGVSEDASASEEEEEEEDDDDVVEEEEEGAGLEGEWMPS MEGFVKYLVDSKLVFDTVERIVAESTDVAYVYFRKSGLERSARITKDLEWFGGQGIAV PEPSTAGSTYATYLTELAESNAPAFLSHYYNIYFAHTTGGVAIGNKISKKILEGRELE FYKWDSDVELLLKDTREKLNELSKHWSRKDRNLCLKEAAKCFQHLGRIVRLIIL</aaseq>|
DNA = <dnaseqindica>2730..2822#2510..2617#1443..1666#43..610#gccgtgcaggatgcccgagtggataacccgttaaaccccccgatgccgctcgccgccgccgtcgccgcctcggcggtcgtgccgccgcggccgcctcctccgccgccgcggagagcgcggcccttgcgctcctttactggactaatactaacgagggacctagcagccctaacggtggcccgctgcgctccctcccctcctgcccccgcggcggaggcggaggcggaggcggtggcggtggatgaggcgccgccagcgaagccgcggccgcggcggtacccgaggcagtaccccggcgaggcggtgggcgtcgccgaggagatgcggttcgtcgccatgcgcctccggaaccccaagcggaccaccctcaagatggacgatacgggggccgaggaggaggtgggcgatggcgtcagtgaggatgcgtcggcgtcagaggaggaggaggaggaggaggacgacgacgacgtggttgaggaggaggaggagggagcggggttggagggggagtggatgccgagcatggaggggttcgtcaagtacctggtggacagcaagctcgtcttcgacaccgtcgagcggatcgtagccgagtccaccgacgtcgcctgtgagttgcgattcctactctccaaatccccgccttcccaatgcaattagaatatcctaattcaatgttgttccttaatcagcttagtcttcagtttccaatgcaattggaatctcctaatttttcaggaattatagatttagaatatgacatattgacttgttggtaggatggtaaaatgtgtcggtaagaacatgtttgggggatacaagctaggtggtaggaattccatttttagtgctcacttgggtatgcggcgaaggttgcaattattttggcaatatgcaaggttgaaatttaaggttgtgattattttgatggaacttgatgcatggtgtgaagtcgtggcgtgaaatgaaaattgtatggattacaattttggaaggcatttactgccaaatggtggaagatgcactttagcacaatacatgttctgcgtgtgcagcaatcatcctacggctgaatctcctttagtggtgcaccgtgaaagaaatgatcttttgggatgttctggagtatagatggcagaccatattggtaatgaagcacattgctggcatcatgcatcatagtgtacttgagcatctccgcgaagatctccgcatcgatttttgtcagtgatattgttttctgacaacttaattagtgtgagacaccaaccatgttgcctagaatgcttgccaaattgaattgttcagcactcggtagtatatgctacatacttttacgtatggctctttaggggcattcagtacctctgtttggaactttgttcaatcactgcaacagaaactgcagttacttacatatcatttatgcaattttcattcagatgtttacttcaggaaaagtggtctggaacgctcagctagaattacaaaagatttggagtggtttggagggcaaggaattgcagtaccagagccaagtactgctggatcaacatatgcaacttatctgactgaacttgctgagagcaatgccccagccttcctttcccactattacaatatttattttgcacatacaactggaggggtggctataggtaacaaggtaatgctattcccatattggatttaagtccccattaagttgtgtaatgaactgttgatatatatactcatgtttcatacctaacctgattaaatatccattatatgtctattaaactataaacaaaatataaaccagcagatttaaatgaaatactgagttcaacgctactttcttatcagatgagatgatacattgtgatttcattgtttcatgtctcaacatgtttctcattaaatggattggcagcacggagctttttgtatggagttgacaaaagagtgtaaagctgaatatctagactgatacatttctattctgggtatcagatattcatatataaagttcctctgttagctggtgatacagggctatttaaacatttggtttctattttcctttgatgtagcagcttgtggccaaaattgctaccaaatccaccaaaatatggcattgccaaagtttagtgatggatttgcgaatcaacattttggctagacattgacatccattggctccaaccaaacagccttataatagcaaagaatcttcttaaacaagaatagagagatagttgctttgttctccccatctcttttgtgattttgagctcacctgcatgccctcttaacctttttgagcgaaatacaagttctgtttaagctttcatatttcccctaaattctcttcacacttgcaccatcataataatgatgctagataatttgttcagtataaaggcaagtttactttgtagtttgtattattacaactctgtaagttctttgaaaacaaaatttatttaattgctctctgaagaagtattagtttgaaacgtaacagatatccaagaaaattttggaaggaagggagctagagttttacaaatgggattctgatgtagaacttttgctaaaagataccagggagaagcttaacgaacttagcaaggtaaccgcctcaagatcactttcttttattttcttgtaagctcgaaactggaatttgccacagaagttatatgcttatgtaacctgattagtctatctgtcatgctgtccagcattggtctcggaaggacaggaacttgtgcttgaaagaagctgcaaaatgtttccagcatttggggcggattgttcgcttaatcatcttatagttcctcatagatgagcaactgatcaaatcaacctataatctattcctgaagacaggaaagctagagatatattaaacttgaggcttagtgcagtcatttttgtcgaagactacacgtcttaactatgttgaagtctggtacagaaggatcttctggtgtgagactgaagctgatcagcgagcactatcctggagattgaaaacaccaggccacaacaatagcctcttttctggcttgcatggtggagctgctcgttggagtgagctcttgctttcagcaacttcgaactgtgcaaagttgaagatgcttgctgctgtcgatcaggatctcacgcgttcaatcgcaatgatgccagcctgacacaattcacttagcagcagaacaccatgctagccagccaggatccccccatgcctgccaaagcttcgtctcctcttgtacctcaccacattatccatttatccttgcaatgaattcgctttgcttgtaccaatcctagctactactactactaccatcttacattatccttgcaatc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001056825.1 RefSeq:Os03g0395000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+OsHO2 has a potential regulatory role for tetrapyrrole biosynthesis in rice. <ref name="ref1" />
 ==Annotated Information==
 ===Function===
-Please input function information here.
+[[File: Shijc-Os03g0395000-Fig1.gif|right|thumb|200px|'' Tetrapyrrole biosynthesis pathway in plants. The carbon skeleton of tetrapyrroles is derived from glutamate. (from reference <ref name="ref1" />).'']]
 ===Expression===
-Please input expression information here.
+[[File: Shijc-Os03g0395000-Fig3.gif|right|thumb|200px|'' Subcellular localization of the YLC2 (OsHO2)-EYFP fusion protein transiently expressed in N. benthamiana leaves by Agrobacterium infiltration. (from reference <ref name="ref1" />).'']]
 ===Evolution===
-Please input evolution information here.
+[[File: Shijc-Os03g0395000-Fig5.png|right|thumb|200px|'' Phylogenetic relationships of OsHO1, OsHO2 and their closely related homologs. (from reference <ref name="ref1" />).'']]
-You can also add sub-section(s) at will.
+BLAST search in the rice genome revealed that Os03g27770 is a single-copy gene with an ORF of 993 bp. The coding region contains 4 exons (3 introns) and encodes a protein of 330 amino acids with a molecular weight of approximately 36.5 kDa. The 8-bp deletion in ylc2 generated a frame-shift mutation, resulting in premature translational termination. Consequently, the ylc2 mutant protein is identical to the WT sequence up to the 244th position, followed by a short stretch of 15 amino acid residues (Fig. S2). The WT protein harbors a predicted N-terminal chloroplast-targeted sequence of 47 amino acids (www.cbs.dtu.dk/service/TargetP). The rice protein is annotated as heme oxygenase 2 (HO2) which contains a heme oxygenase (HO) domain (Pfam 01126) in the second half of the protein (176th–325th residues). Pairwise 3D structural alignment <ref name="ref7" /> (Gelly et al. 2011) demonstrated the tight superimposition of the mutant protein with OsHO2 except for the absence of three C-terminal α-helices (Fig. S3) which may be important for OsHO2 functions.
 ==Labs working on this gene==
-Please input related labs here.
+. State Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Institute of Crops and Nuclear Technology Utilization, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==

← Older revision		Revision as of 19:36, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os03g0395000\|		GeneName = Os03g0395000\|

@@ Line 43: / Line 43: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]