Os03g0438100 - Revision history

Liming Pan: /* Labs working on this gene */

2016-10-19T13:38:44Z

‎Labs working on this gene

Liming Pan: /* Annotated Information */

2016-10-19T13:30:09Z

‎Annotated Information

Liming Pan: /* Annotated Information */

2016-10-19T13:29:57Z

‎Annotated Information

Liming Pan at 13:29, 19 October 2016

2016-10-19T13:29:44Z

192.168.72.52 at 07:21, 14 May 2015

2015-05-14T07:21:39Z

124.16.129.48 at 19:37, 22 July 2012

2012-07-22T19:37:41Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os03g0438100| Description = Similar to Allene oxide cyclase precursor (EC 5.3.99.6) (Allene oxide cylase)| Version = NM_001056982.2 GI:297601156 ..."

2012-06-24T12:44:46Z

Created page with "{{JaponicaGene| GeneName = Os03g0438100| Description = Similar to Allene oxide cyclase precursor (EC 5.3.99.6) (Allene oxide cylase)| Version = NM_001056982.2 GI:297601156 ..."

New page

{{JaponicaGene|
GeneName = Os03g0438100|
Description = Similar to Allene oxide cyclase precursor (EC 5.3.99.6) (Allene oxide cylase)|
Version = NM_001056982.2 GI:297601156 GeneID:4333201|
Length = 1302 bp|
Definition = Oryza sativa Japonica Group Os03g0438100, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:19121644..19122945|
CDS = 19122001..19122402,19122500..19122820|
GCID = <gbrowseImage1>
name=NC_008396:19121644..19122945
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:19121644..19122945
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggccgccgccgccccctcgcgagtctccgtcagggccgcggcgcccgggcaaacggggggcttcgccaagatccggccgcaggtggtggtggcagcggcggcgaggtcggccggggtgagcggccgcagggcgaggagcgttcgggcgtcgctgttctcgccgaagccggcgacgcccaaggacgcgaggccggccaaggtgcaggagatgttcgtgtacgagatcaacgagcgcgaccgcgagagccccgcctacctccgcctcagcgccaagcagacggagaacgccctcggcgatctcgtccccttcaccaacaagctgtacagcggaagcctggacaagcggctggggatctcggcggggatctgcatcctgatccagcacgtgccggagcgcaacggcgaccgctacgaggccatctacagcttctacttcggcgactacggccacatctccgtgcagggcccgtacctgacctacgaggagtcctacctcgccgtcaccggcggctccggcgtcttcgaaggcgcctacggccaggtcaagctcaaccagatcgtcttccccttcaagatcttctacaccttctacctcaagggcatccccgacctgccgcgggagctgctctgcacgcccgtcccgccgtccccgaccgtcgagccaacgccagccgccaaggccaccgagccccacgcctgcctcaacaacttcaccaactag</cdnaseq>|
AA = <aaseq>MAAAAPSRVSVRAAAPGQTGGFAKIRPQVVVAAAARSAGVSGRR ARSVRASLFSPKPATPKDARPAKVQEMFVYEINERDRESPAYLRLSAKQTENALGDLV PFTNKLYSGSLDKRLGISAGICILIQHVPERNGDRYEAIYSFYFGDYGHISVQGPYLT YEESYLAVTGGSGVFEGAYGQVKLNQIVFPFKIFYTFYLKGIPDLPRELLCTPVPPSP TVEPTPAAKATEPHACLNNFTN</aaseq>|
DNA = <dnaseqindica>544..945#126..446#ccgcaccgcaccaccaccgttgcggcatcaccaatcggcaatcgcagagcaaaagcatcgggaggagcaagctactagtagtagtatagtagtactagtcaaagaaatcaacagcttgattgaccatggccgccgccgccccctcgcgagtctccgtcagggccgcggcgcccgggcaaacggggggcttcgccaagatccggccgcaggtggtggtggcagcggcggcgaggtcggccggggtgagcggccgcagggcgaggagcgttcgggcgtcgctgttctcgccgaagccggcgacgcccaaggacgcgaggccggccaaggtgcaggagatgttcgtgtacgagatcaacgagcgcgaccgcgagagccccgcctacctccgcctcagcgccaagcagacggagaacgccctcggcgatctcgtccccttcaccaacaaggttcgctacctagtagtcccctagcttcttcttcatcctccgctcggtcgcggctgtgctgagagccgttcccctgcttggcctctggttcttgcagctgtacagcggaagcctggacaagcggctggggatctcggcggggatctgcatcctgatccagcacgtgccggagcgcaacggcgaccgctacgaggccatctacagcttctacttcggcgactacggccacatctccgtgcagggcccgtacctgacctacgaggagtcctacctcgccgtcaccggcggctccggcgtcttcgaaggcgcctacggccaggtcaagctcaaccagatcgtcttccccttcaagatcttctacaccttctacctcaagggcatccccgacctgccgcgggagctgctctgcacgcccgtcccgccgtccccgaccgtcgagccaacgccagccgccaaggccaccgagccccacgcctgcctcaacaacttcaccaactagctcaacccgcgctgtacatcacttccaagttccaattgctactgttactactctgccaataattgatggagatgcagatcgagctgcctgattagtttagtgttaattgcggcatgtgcggtgtgtatcgtatcactgataaggaagaggaatcgaggacaagatatttgtttcctccctgcgatgagccgatgaactgatccgaacaagaagaggcttcttggtagtaggtggattggaatatcgaaatgatatgattgtgatccgcaactacaacgaccgccactacggagagctcatgctatttgtttgtttgtttttgtactagtgctcaaatatatactccagctcatgtcc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001056982.2 RefSeq:Os03g0438100]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

@@ Line 17: / Line 17: @@
 ==Labs working on this gene==
 * Botanical Institute, Molecular Cell Biology, Karlsruhe Institute of Technology, Kaiserstraße 2, 76131 Karlsruhe, Germany,
-* Division of Plant Sciences, National Institute of Agrobiological Sciences, 2–1–2 Kannondai, Tsukuba, Ibaraki 305–8602,
+* Division of Plant Sciences, National Institute of Agrobiological Sciences, 2–1–2 Kannondai, Tsukuba, Ibaraki 305–8602,Japan,
 * Botanical Gardens, Graduate School of Science, Osaka City University, Kisaichi, Katano-shi, Osaka 576–0004, Japan,
 * Biotechnology Research Center, University of Tokyo, 1–1–1 Yayoi, Bunkyo–ku, Tokyo 113–8657, Japan,
-* Rice Applied Genomics Research Unit, National Institute of Agrobiological Sciences, 2–1–2 Kannondai, Tsukuba, Ibaraki
+* Rice Applied Genomics Research Unit, National Institute of Agrobiological Sciences, 2–1–2 Kannondai, Tsukuba, Ibaraki305–8602, Japan,
-–8602, Japan,
+* Agrigenomics Research Center, National Institute of Agrobiological Sciences, 1–2 Ohwashi, Tsukuba, Ibaraki 305–8634,Japan, and
 * Department of Biosciences, Teikyo University, 1–1 Toyosatodai, Utsunomiya 320–8551, Japan

@@ Line 2: / Line 2: @@
 ==Annotated Information==
-[[File:126-Os03g0438100.png|right|thumb|427px|'''Figure 1.''' ''Long-coleoptile phenotype of cpm2 and hebiba mutants.<ref name="ref1" />.'']]
+[[File:126-Os03g0438100.png|right|thumb|327px|'''Figure 1.''' ''Long-coleoptile phenotype of cpm2 and hebiba mutants.<ref name="ref1" />.'']]
 ===Gene Symbol===
 *'''''Os03g0438100''''' '''''<=>''''' '''''OsAOC,AOC'''''

@@ Line 2: / Line 2: @@
 ==Annotated Information==
-[[File:126-Os03g0438100..png|right|thumb|427px|'''Figure 1.''' ''Long-coleoptile phenotype of cpm2 and hebiba mutants.<ref name="ref1" />.'']]
+[[File:126-Os03g0438100.png|right|thumb|427px|'''Figure 1.''' ''Long-coleoptile phenotype of cpm2 and hebiba mutants.<ref name="ref1" />.'']]
 ===Gene Symbol===
 *'''''Os03g0438100''''' '''''<=>''''' '''''OsAOC,AOC'''''

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice '''''Os03g0438100''''' was reported as '''''OsAOC''''' in 2013 <ref name="ref1" /> by researchers from Germany and Japan.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+* '''''OsAOC''''' encodes a functional AOC
-===Expression===
+===Phenotypic analysis===
-Please input expression information here.
+* The mutant exhibited a long mesocotyl in etiolated seedlings. Furthermore, the mutant produced at most only a few fertile seeds in each panicle and is almost sterile. As the mutant was successfully pollinated by the wild-type, this feature is apparently caused by a reduction in male fertility.
+* The wild-type had a mean final coleoptile length of 6.6 mm, but cpm2 and heb- iba developed significantly longer coleoptiles (16.0 and 23.4 mm for cpm2 and hebiba, respectively). Thus, both mutants exhibit the long-coleoptile phenotype, but with different amplitude.
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
-Please input related labs here.
+* Botanical Institute, Molecular Cell Biology, Karlsruhe Institute of Technology, Kaiserstraße 2, 76131 Karlsruhe, Germany,
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]

← Older revision		Revision as of 07:21, 14 May 2015
Line 20:		Line 20:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]
−	~~GeneName = Os03g0438100\|~~
−	~~Description = Similar to Allene oxide cyclase precursor (EC 5.3.99.6) (Allene oxide cylase)\|~~
−	~~Version = NM_001056982.2 GI:297601156 GeneID:4333201\|~~
−	~~Length = 1302 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os03g0438100, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 3\|Chromosome 3]]\|~~
−	~~AP = Chromosome 3:19121644..19122945\|~~
−	~~CDS = 19122001..19122402,19122500..19122820\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008396:19121644..19122945~~
−	~~source=RiceChromosome03~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008396:19121644..19122945~~
−	~~source=RiceChromosome03~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atggccgccgccgccccctcgcgagtctccgtcagggccgcggcgcccgggcaaacggggggcttcgccaagatccggccgcaggtggtggtggcagcggcggcgaggtcggccggggtgagcggccgcagggcgaggagcgttcgggcgtcgctgttctcgccgaagccggcgacgcccaaggacgcgaggccggccaaggtgcaggagatgttcgtgtacgagatcaacgagcgcgaccgcgagagccccgcctacctccgcctcagcgccaagcagacggagaacgccctcggcgatctcgtccccttcaccaacaagctgtacagcggaagcctggacaagcggctggggatctcggcggggatctgcatcctgatccagcacgtgccggagcgcaacggcgaccgctacgaggccatctacagcttctacttcggcgactacggccacatctccgtgcagggcccgtacctgacctacgaggagtcctacctcgccgtcaccggcggctccggcgtcttcgaaggcgcctacggccaggtcaagctcaaccagatcgtcttccccttcaagatcttctacaccttctacctcaagggcatccccgacctgccgcgggagctgctctgcacgcccgtcccgccgtccccgaccgtcgagccaacgccagccgccaaggccaccgagccccacgcctgcctcaacaacttcaccaactag</cdnaseq>\|
−	AA = <aaseq>MAAAAPSRVSVRAAAPGQTGGFAKIRPQVVVAAAARSAGVSGRR ARSVRASLFSPKPATPKDARPAKVQEMFVYEINERDRESPAYLRLSAKQTENALGDLV PFTNKLYSGSLDKRLGISAGICILIQHVPERNGDRYEAIYSFYFGDYGHISVQGPYLT YEESYLAVTGGSGVFEGAYGQVKLNQIVFPFKIFYTFYLKGIPDLPRELLCTPVPPSP TVEPTPAAKATEPHACLNNFTN</aaseq>\|
−	DNA = <dnaseqindica>544..945#126..446#ccgcaccgcaccaccaccgttgcggcatcaccaatcggcaatcgcagagcaaaagcatcgggaggagcaagctactagtagtagtatagtagtactagtcaaagaaatcaacagcttgattgaccatggccgccgccgccccctcgcgagtctccgtcagggccgcggcgcccgggcaaacggggggcttcgccaagatccggccgcaggtggtggtggcagcggcggcgaggtcggccggggtgagcggccgcagggcgaggagcgttcgggcgtcgctgttctcgccgaagccggcgacgcccaaggacgcgaggccggccaaggtgcaggagatgttcgtgtacgagatcaacgagcgcgaccgcgagagccccgcctacctccgcctcagcgccaagcagacggagaacgccctcggcgatctcgtccccttcaccaacaaggttcgctacctagtagtcccctagcttcttcttcatcctccgctcggtcgcggctgtgctgagagccgttcccctgcttggcctctggttcttgcagctgtacagcggaagcctggacaagcggctggggatctcggcggggatctgcatcctgatccagcacgtgccggagcgcaacggcgaccgctacgaggccatctacagcttctacttcggcgactacggccacatctccgtgcagggcccgtacctgacctacgaggagtcctacctcgccgtcaccggcggctccggcgtcttcgaaggcgcctacggccaggtcaagctcaaccagatcgtcttccccttcaagatcttctacaccttctacctcaagggcatccccgacctgccgcgggagctgctctgcacgcccgtcccgccgtccccgaccgtcgagccaacgccagccgccaaggccaccgagccccacgcctgcctcaacaacttcaccaactagctcaacccgcgctgtacatcacttccaagttccaattgctactgttactactctgccaataattgatggagatgcagatcgagctgcctgattagtttagtgttaattgcggcatgtgcggtgtgtatcgtatcactgataaggaagaggaatcgaggacaagatatttgtttcctccctgcgatgagccgatgaactgatccgaacaagaagaggcttcttggtagtaggtggattggaatatcgaaatgatatgattgtgatccgcaactacaacgaccgccactacggagagctcatgctatttgtttgtttgtttttgtactagtgctcaaatatatactccagctcatgtcc</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001056982.2 RefSeq:Os03g0438100]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 3]]~~
−	~~[[Category:~~Chromosome 3]]

← Older revision		Revision as of 19:37, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os03g0438100\|		GeneName = Os03g0438100\|