Os03g0656900 - Revision history

192.168.72.52: /* Structured Information */

2015-06-12T05:57:25Z

‎Structured Information

Hongfei at 14:50, 6 June 2014

2014-06-06T14:50:59Z

124.16.129.48 at 19:40, 22 July 2012

2012-07-22T19:40:10Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os03g0656900| Description = NusB/RsmB/TIM44 domain containing protein| Version = NM_001057346.1 GI:115454420 GeneID:4333618| Length = 4016 bp| ..."

2012-06-24T12:51:20Z

Created page with "{{JaponicaGene| GeneName = Os03g0656900| Description = NusB/RsmB/TIM44 domain containing protein| Version = NM_001057346.1 GI:115454420 GeneID:4333618| Length = 4016 bp| ..."

New page

{{JaponicaGene|
GeneName = Os03g0656900|
Description = NusB/RsmB/TIM44 domain containing protein|
Version = NM_001057346.1 GI:115454420 GeneID:4333618|
Length = 4016 bp|
Definition = Oryza sativa Japonica Group Os03g0656900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:26387424..26391439|
CDS = 26387533..26387810,26387900..26387976,26388139..26388273,26388970..26389024,26389150..26389237<br>,26390494..26390592,26390681..26390812|
GCID = <gbrowseImage1>
name=NC_008396:26387424..26391439
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:26387424..26391439
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggaagcgacgggcgccgccgtatccgccttctccaccgcgtcctcgtcgagtcccgcggcgcctagacacggccgtctcctggcgagccccgcggcgtggcgcagcgcacggacgctgccaccacgggccgtcgcctcctcccgcgcgacggtcctcgtctcgaaccctcctccgccgccgctgccgccgacacccgctcctgctgcggtcgcgccctccaaggtcgaccggtccgggcggttctgtagcccccgcgccgctcgcgagctcgcgctgatgatttcctacgcggcttgccttgagggcgccgacgtggtgcggctcttcgaccgcagaatcagcgcgagaagagaacctggctatgttttcgataaggcgtgcgtggtgaactacaaccatatgagcttcggtgggggacctctggaggtcgggacagaggaggaggctgagaagctcatgagtcagaacgagaaggattcagcaaatgaagcagaagttctttcagctcctccaaagctggtgtacaacaactttgtgttacgactggctcgagaaattttagtggctgttgccagtggatgggacaagcatgttgatatcatcaacaaaataactccccagaattggaaggacgaacctgttgcaaggatccttgaactttgtattcttcatattgccatggcagagatgacatcaaaaggaacacctcacaaaattgtcattaacgaggctgtggatttggcaaaacggttctgtgatggtggtgctcctcgggtaatcaatggatgccttcggacatttgtgaaggatcacatgaacattgacaccagtcagccagctccagctgagtcaaaagcgtga</cdnaseq>|
AA = <aaseq>MEATGAAVSAFSTASSSSPAAPRHGRLLASPAAWRSARTLPPRA VASSRATVLVSNPPPPPLPPTPAPAAVAPSKVDRSGRFCSPRAARELALMISYAACLE GADVVRLFDRRISARREPGYVFDKACVVNYNHMSFGGGPLEVGTEEEAEKLMSQNEKD SANEAEVLSAPPKLVYNNFVLRLAREILVAVASGWDKHVDIINKITPQNWKDEPVARI LELCILHIAMAEMTSKGTPHKIVINEAVDLAKRFCDGGAPRVINGCLRTFVKDHMNID TSQPAPAESKA</aaseq>|
DNA = <dnaseqindica>110..387#477..553#716..850#1547..1601#1727..1814#3071..3169#3258..3389#atttctctttctcccacctccaccggcgacgccaccgccgccgcctcctcctcctccgcctctctacggcagcctcgccgccgcgccgcgcagcgcagcgcagagcaacatggaagcgacgggcgccgccgtatccgccttctccaccgcgtcctcgtcgagtcccgcggcgcctagacacggccgtctcctggcgagccccgcggcgtggcgcagcgcacggacgctgccaccacgggccgtcgcctcctcccgcgcgacggtcctcgtctcgaaccctcctccgccgccgctgccgccgacacccgctcctgctgcggtcgcgccctccaaggtcgaccggtccgggcggttctgtagcccccgcgccgctcgcgagctcgcgctgtgagtcctcgccctcgagcccgagaactttgggctgcttgattcggttcgtatttgtcgctaatggctgcctgccaccgtgcttgcaggatgatttcctacgcggcttgccttgagggcgccgacgtggtgcggctcttcgaccgcagaatcagcgcgagaagaggtgagcctcctcctgacgcctcttagcttctttgcactatccttgtgatccactagcagcatcactgtgctgcacaatggcttcaattgtttggccttcgttggatagatgaatttggtttctctttgcctcattctggtcttgttctatatgattttgcagaacctggctatgttttcgataaggcgtgcgtggtgaactacaaccatatgagcttcggtgggggacctctggaggtcgggacagaggaggaggctgagaagctcatgagtcagaacgagaaggattcagcaaatggtaacaacttttttgcaaatgttattctcattgaaactagttctgcatcttgctggatgaaaattggggatatagcactggcacatgatcttacttaactatttcttcaagagctcattaactaatcggctaatcgcaatgactaatcctgcaagttcaatcacttgccattttgcaagagcaaaagtcccctagattaccctaatcctgtccttaatacgaagtcaatgtcacaatcgcaatgctattggttttatggcaatgatattatgcttgccttttataaacatttggaatataatatgtgtttttttgcagtatatttattcaggaaataatgtatccttttttttaaaaaaaaactgtgagtatttttagataatactccctccgtcccataatataagagattttgagtttttccttgtactgtttgaccactcgtcttattcaaaaaaaaaaatggaattactattttgtttgacttactttattatctaaagtacattaagcacaacttttcgttttttatatttgcacaaattttttgaataagacgagtggtcaaacagtacaagcaaaaactcaaaatcccttatattatgggacggagggagtatgttcacaacatgtctctgtagtatattcttgatgaattatttaatttgacacaagattcattgtcttgtaattcagaagcagaagttctttcagctcctccaaagctggtgtacaacaactttgtgttacggtatttttttcttctctcctctttttggttggtataatcacataatggacactgttgtttaggtaacgtgtttttacgtgcggggtccttgtaggtatttttctaattacatgctttctgaacagactggctcgagaaattttagtggctgttgccagtggatgggacaagcatgttgatatcatcaacaaaataactccccagaattggaaggttggatactttttttcccagtgttgtatatcgatccatcaaatctttgtacttgcttgctaaatcgtgcataagtagaatgcttgttgatttaattgaaaggcgctatatattattagagaacataatccctcagtaatcactagtactgaattatatatgcatcttgttactatattgtgtaacaatctagttggagctgcttttgcctcatcaccgtgctaaattatcgaacatttaggaacagggttatacctgccatttgatcattcctatgatcaatttctcaagtaaaacctgcatcttaggagtaggttacttgccaaataaaaccatttgtcacataatatttttaatacatttttttaacctttaacttacatcccactaaaaaaaagtcaactcatggaatttcagactactatgtatagtttccactttaaacagctgtcaatgtgatggattgggatgttcccaagccccgaagcgagtgcacagttggcctactataatgaccaaaaggtgtagcaccagagccccacaactttgatttatggggatcaaaactgaaagtaaatggtgtgattgagctcacaatgaaactctcagtcacagtaaatgagagttgattgtattgattggttgcatgtaatgattaatgtttgggtagtataagtttattattagcgtagttgttgtgtagcagacaggctgtaaatgaatcattaatagagagggcttagaggggtgggaaaagaggatattgtagttaagtttatactaaaaagaagggtataaaggattcgttaatagtaattaaaagctaaacaaaaattgaggcctctaaatttttcgtgcccgtgcatcttgagcaagccacatttgaaccatgttaggtgcttgttcaccaccttttgctatggctgtaggcatccctcgatgcaaaagccaggatttccctgttatctttgcattgctcacctggttcatttccccttctatggggcttgatttcctacaggcatagttgtcatatagaggtgctagttatttaatacatcagctaccttcttgaaatatctgaaattttccatcaatgttagttgattctacccaaagatccctgtttttctaaacaaaaattttaagaatatgaaagacaataggttgcccaatcacatgcttaattgctgatttaaatgatcatgttttgcttctatttaatttttgctgactcgccaaaattctgtgggcaggacgaacctgttgcaaggatccttgaactttgtattcttcatattgccatggcagagatgacatcaaaaggaacacctcacaaaattgtcattaacgaggttaccattttatcacaatctccttcatattttaagtttgacaaaagaaacatataaatatctatcttgttatgtccattgatgataggctgtggatttggcaaaacggttctgtgatggtggtgctcctcgggtaatcaatggatgccttcggacatttgtgaaggatcacatgaacattgacaccagtcagccagctccagctgagtcaaaagcgtgaagtttttgcaaatatgaaaatatgaatcatcacaaatatgattcaaagaatagaagcacggagaaaatcctgctctctttgtctgatctcctttggttgtttaaagattgattggtgaagttgaaaggaggcaaacatgctggacttgtggagaactagaagtatcttcaatatttagctggtggttagactagatatgttgagccatatactgatgatgcactcttcttgaagaactaaatgacactacttctaacagcttttgccatgctgattcctgtgcttaatgggacaagagaacctgtatcatagtgtatgtgtaaagttgcaaggtaagggttgcatctctcaatttcacaataacgtgcttgagctgctgagtaagttgggagttgggagtttgcagctgatactatggaagatgcattttctccaagatttggatatgatatattgtgtaattctacctgcacacgagttctgttcaaatataaatttggtacacctctaatagtatttgtattgtatatggctgcaaacttttcctacgaaattctttgtaagtagcatgggttgtaacctgcttaacgatccaatgattgctgctttaattaataagtttgttgc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001057346.1 RefSeq:Os03g0656900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

@@ Line 1: / Line 1: @@
 Please input one-sentence summary here.
+A plastid protein NUS1 is essential for build-up of the genetic system for early chloroplast development under cold stress
-==Annotated Information==
+conditions
 ===Function===
-Please input function information here.
+  Accumulation of NUS1 specifically occurred in the pre-emerged immature leaves, and is enhanced by low-temperature treatment. The C-terminus of NUS1 shows structural similarity to the bacterial antitermination factor NusB, which is known to play roles in the regulation of ribosomal RNA transcription. The RNA-immunoprecipitation and gel mobility shift assays indicated that NUS1 binds to several regions of chloroplast RNA including the upstream leader region of the 16S rRNA precursor. In the leaves of the NUS1-deficient mutant, accumulation of chloroplast rRNA during early leaf development was impaired and chloroplast translation/transcription capacity was severely suppressed under low temperature. Our results suggest that NUS1 is involved in the regulation of chloroplast RNA metabolism and promotes the establishment of the plastid genetic system during early chloroplast development under cold stress conditions.
+  NUS1 encodes a previously uncharacterized chloroplast protein which has a bacterial NusB-like RNA-binding domain, and that NUS1is expressed during a strictly limited period in the early P4 stage in a temperature-dependent manner.NUS1transcript and protein accumulated abundantly in leaves at the early P4 stage and probably degraded rapidly during the late P4 stage
 ===Expression===
-Please input expression information here.
+  V1 gene functions in the second step of chloroplast differentiation. Another important characteristic of thev1mutant is that chloroplast development was not influenced by growth temperature after leaf emergence (Iba et al., 1991). This indicates that the v1phenotype is determined at a certain stage of leaf development and that the establishment of chloroplast genetic systems is strictly regulated by the program controlling early leaf development.
 ===Evolution===
-Please input evolution information here.
+  The V1 locus was previously known as a classical phenotypic marker on the short arm of chromosome 3. Fine mapping pinpointed theV1 locus to a 40 kb region , and
+identified a one-base substitution that generated a stop codon in a putative gene. The rice full-length cDNA database (http://cdna01.dna.affrc.go.jp/cDNA/) and our sequence analyses revealed that this gene consists of about 1.1 kbp of cDNA including an open reading frame (ORF) of 867 bp that encodes a protein of 280 amino acids,with a molecular mass of 32.1 kDa. A BLAST search (Altschul et al., 1990) revealed that this putative protein was previously uncharacterized and possessed a region structurally similar to the bacterial transcription termination factor NusB at its C terminus (Figure 2) (Figure S1 in Supporting Information).
 You can also add sub-section(s) at will.

← Older revision		Revision as of 19:40, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os03g0656900\|		GeneName = Os03g0656900\|

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 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]