Os03g0726100 - Revision history

Xysj1985: /* Annotated Information */

2016-10-17T12:11:31Z

‎Annotated Information

Xysj1985 at 12:10, 17 October 2016

2016-10-17T12:10:48Z

192.168.72.52 at 07:28, 14 May 2015

2015-05-14T07:28:43Z

124.16.129.48 at 19:42, 22 July 2012

2012-07-22T19:42:19Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os03g0726100| Description = Similar to Tubulin alpha-1 chain (Alpha-1 tubulin)| Version = NM_001057667.1 GI:115455062 GeneID:4333966| Length = 2..."

2012-06-24T12:56:52Z

Created page with "{{JaponicaGene| GeneName = Os03g0726100| Description = Similar to Tubulin alpha-1 chain (Alpha-1 tubulin)| Version = NM_001057667.1 GI:115455062 GeneID:4333966| Length = 2..."

New page

{{JaponicaGene|
GeneName = Os03g0726100|
Description = Similar to Tubulin alpha-1 chain (Alpha-1 tubulin)|
Version = NM_001057667.1 GI:115455062 GeneID:4333966|
Length = 2884 bp|
Definition = Oryza sativa Japonica Group Os03g0726100, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:30287946..30290829|
CDS = 30288071..30288163,30289110..30289344,30289431..30289801,30289910..30290566|
GCID = <gbrowseImage1>
name=NC_008396:30287946..30290829
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:30287946..30290829
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgagggagtgcatctcgatccacatcggccaggccggtatccaggtcgggaacgcgtgctgggagctctactgcctcgagcatggcatccaggctgatggtcagatgcccagtgacaggactgttggtggaggtgatgatgctttcaacaccttcttcagtgagactggtgctgggaagcatgttccccgtgctgtatttgttgatcttgagcctactgtgattgatgaggtgaggactggttgctaccgccagctcttccaccctgagcagctcatcaatggcaaggaggatgcagctaacaactttgcccgtggtcactacaccattggcaaggagattgttgatctgtgccttgaccgcatcaggaagcttgctgacaactgcactggtctccaaggtttccttgtgttcaacgctgttggaggtggaacgggctctggtcttggttcccttctcctggagcgcctttctgtggactatggcaagaagtccaagcttgggttcactgtgtacccatcccctcaggtctccacctctgtggttgagccatacaacagtgtcctctctacccactccctccttgagcacactgatgttgctgttctgcttgataatgaggccatctatgacatctgccgccgctcccttgacattgagcgcccaacctacaccaacctcaacaggcttgtgtctcaggttatctcatccctgaccgcctccctgaggtttgatggtgctctgaacgtggatgtcaatgagttccagaccaaccttgtgccctacccaaggatccacttcatgctttcgtcctacgctccagtgatctctgcggagaaggcctaccatgagcaactctctgttgccgagatcaccaacagtgccttcgagccatcctccatgatggccaagtgcgaccctcgccacggcaagtacatggcctgctgcctcatgtaccgcggcgatgtcgtgcccaaggacgtgaacgccgccgtcgccaccatcaagaccaagcgcaccatccagttcgtggactggtgcccgacggggttcaagtgcggcatcaactaccagccgcccagcgtcgtccccagcggcgacctcgccaaggtgcagagggccgtgtgcatgatctccaactccaccagcgtcgtggaggtgttctcccgcatcgaccacaagttcgacctcatgtactccaagcgcgccttcgtccactggtacgtgggtgagggcatggaggagggtgagttctctgaggcccgtgaggatctcgccgcgttggagaaggactacgaggaggttggcgctgagtccgacgagaatgaggatggcgatgatggtgacgagtactag</cdnaseq>|
AA = <aaseq>MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPSDRTVGG GDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGCYRQLFHPEQLINGKEDAANN FARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLD IERPTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVI SAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAT IKTKRTIQFVDWCPTGFKCGINYQPPSVVPSGDLAKVQRAVCMISNSTSVVEVFSRID HKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESDENEDGDDGDE Y</aaseq>|
DNA = <dnaseqindica>126..218#1165..1399#1486..1856#1965..2621#aagccgagacaacgcagagaaaggcgtcttcgtactcgcctctctccgcgcctccgcgcttttcctcctcctctcccctctctcccttctccgccgccgtcgcagcatcaacccaatccgccgccatgagggagtgcatctcgatccacatcggccaggccggtatccaggtcgggaacgcgtgctgggagctctactgcctcgagcatggcatccaggtacggatccgcgtcccatctccctcaccccccgtgttcttcgtgcctgcttctgggtcagatctgggtggattcgcggttgttggatgtggggggctgtgtttatttgtcggtggatctggttgtctggatctgcgttttctctgtcgtagttagcggatctgatgaaatgtttagtgttcgtgtatactggtatggtggatctggtcctaggatgcgtggaatggatatatgtaggcgaattggaggatttattttgtgaattttgctgaaatgatagttctaaacactggatctgacctcgggatgctgttaaatgtggaaatcatggtcgatgctgtcatgaacatggtgttcttatggtagatctgagcaatgtatgtttcaaaattgtttgtcacatggaaatgctatggttctagatgcaatagaatgatacatgccgagatcccctctagttgatatgatagatcatgatgttttacagctatgtcatatgaatatgttcatttgttaccgatgtatttggatctacttaacatttccaaagcacgccgcgttctaattctagatctggtagtcatgtttgtacacgtcacccacctaatacaaatacatatgtctagtgtttggtgacactgcccgtcagatctgttttttccagatctgtggaacaaatactccacgcatgtatggtagttttgaaacgatcttgtatcttccattgttgtagtaacaactaaataaagtacaattgttcaattattgggaatcgtattttctgtagtgccgatgtacagcatattcatagatgtctatttaggaactcaaattttaaattgaggactagttatttattgtgggtcagtcttttgaattgtgttatcttgctgtactgaaataataatgtaccactaaggcgctaacatgtattttgtcctttcaggctgatggtcagatgcccagtgacaggactgttggtggaggtgatgatgctttcaacaccttcttcagtgagactggtgctgggaagcatgttccccgtgctgtatttgttgatcttgagcctactgtgattgatgaggtgaggactggttgctaccgccagctcttccaccctgagcagctcatcaatggcaaggaggatgcagctaacaactttgcccgtggtcactacaccagtgagttccattcttactaccacggtgctattttttttgttatgtggctaattacatgactaacttggggtgctaaatctttacagttggcaaggagattgttgatctgtgccttgaccgcatcaggaagcttgctgacaactgcactggtctccaaggtttccttgtgttcaacgctgttggaggtggaacgggctctggtcttggttcccttctcctggagcgcctttctgtggactatggcaagaagtccaagcttgggttcactgtgtacccatcccctcaggtctccacctctgtggttgagccatacaacagtgtcctctctacccactccctccttgagcacactgatgttgctgttctgcttgataatgaggccatctatgacatctgccgccgctcccttgacattgagcgcccaacctacaccaacctcaacaggcttgtgtctcaggtacagtcttgtatccttgcaatgatctcaaattctctgctatgttaattcactgccatttcttgtttgtgctgttctctaaccaacttgtttattgctaatgtgcaggttatctcatccctgaccgcctccctgaggtttgatggtgctctgaacgtggatgtcaatgagttccagaccaaccttgtgccctacccaaggatccacttcatgctttcgtcctacgctccagtgatctctgcggagaaggcctaccatgagcaactctctgttgccgagatcaccaacagtgccttcgagccatcctccatgatggccaagtgcgaccctcgccacggcaagtacatggcctgctgcctcatgtaccgcggcgatgtcgtgcccaaggacgtgaacgccgccgtcgccaccatcaagaccaagcgcaccatccagttcgtggactggtgcccgacggggttcaagtgcggcatcaactaccagccgcccagcgtcgtccccagcggcgacctcgccaaggtgcagagggccgtgtgcatgatctccaactccaccagcgtcgtggaggtgttctcccgcatcgaccacaagttcgacctcatgtactccaagcgcgccttcgtccactggtacgtgggtgagggcatggaggagggtgagttctctgaggcccgtgaggatctcgccgcgttggagaaggactacgaggaggttggcgctgagtccgacgagaatgaggatggcgatgatggtgacgagtactagaggagtcgtcgtcgtctgggggcttgatgttctgtgtgtcaaggcctgattgataactgctgctatcccatgatctgccagtgtggagttatcctgttgccgtgtgcgtgtgtcttcgagacatttgcttgtggtgatctgatgtttggggcttaatgggcttacaaccctcgttgttgtaacctgtgtgccctgttttatgtgagaccgcttcgtcacttataatatgcgcgtttgttcaattttatgtttgtttcttgtgt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001057667.1 RefSeq:Os03g0726100]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

@@ Line 2: / Line 2: @@
 ==Annotated Information==
-[[File:101-Os03g0726100.png|right|thumb|427px|'''Figure 1.''' ''RNA gel blot showing the expression of RiP-3 gene in various parts of the panicle and the penultimate leaf of 6-week-old well-watered (control) and water-stressed rice plants.<ref name="ref1" />.'']]
+[[File:101-Os03g0726100.png|right|thumb|327px|'''Figure 1.''' ''RNA gel blot showing the expression of RiP-3 gene in various parts of the panicle and the penultimate leaf of 6-week-old well-watered (control) and water-stressed rice plants.<ref name="ref1" />.'']]
 ===Function===
 * '''''RiP-3''''' encodes a putative α-tubulin protein.

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice '''''Os03g0726100''''' was reported as '''''OsTubA1''''' and '''''RiP-3''''' in 2000 and 2014, respectively <ref name="ref1" /> <ref name="ref2" />  by researchers from Republic of Korea and Canada.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+* '''''RiP-3''''' encodes a putative α-tubulin protein.
 ===Expression===
-Please input expression information here.
+* Expression of α-tubulin cDNA in various reproductive and vegetative organs of 6-week old well-watered and water-stressed rice plants was probed with RiP-3 cDNA. The cDNA hybridized to an expected 1.4 Kb transcript (Fig. 1).
+* The highest expression was detected in ovaries, followed by rachis and glumes (lemma þ palea). No expression was detected in the penultimate leaf (the uppermost fully expanded leaf). Water stress suppressed α-tubulin expression in ovaries, rachis and bracts but promoted it in anthers (40%).
-===Evolution===
+* Densitometric analysis showed that the greatest decrease in transcript level under water stress was in glumes (63%), followed by rachis (25%) and ovaries (12%).
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
-Please input related labs here.
+* Institut de recherche en biologie végétale, Université de Montréal, Montreal, QC H1X 2B2, Canada
+* Department of Life Science and National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang 790–784, Republic of Korea
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]

← Older revision		Revision as of 07:28, 14 May 2015
Line 20:		Line 20:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]
−	~~GeneName = Os03g0726100\|~~
−	~~Description = Similar to Tubulin alpha-1 chain (Alpha-1 tubulin)\|~~
−	~~Version = NM_001057667.1 GI:115455062 GeneID:4333966\|~~
−	~~Length = 2884 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os03g0726100, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 3\|Chromosome 3]]\|~~
−	~~AP = Chromosome 3:30287946..30290829\|~~
−	~~CDS = 30288071..30288163,30289110..30289344,30289431..30289801,30289910..30290566\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008396:30287946..30290829~~
−	~~source=RiceChromosome03~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008396:30287946..30290829~~
−	~~source=RiceChromosome03~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atgagggagtgcatctcgatccacatcggccaggccggtatccaggtcgggaacgcgtgctgggagctctactgcctcgagcatggcatccaggctgatggtcagatgcccagtgacaggactgttggtggaggtgatgatgctttcaacaccttcttcagtgagactggtgctgggaagcatgttccccgtgctgtatttgttgatcttgagcctactgtgattgatgaggtgaggactggttgctaccgccagctcttccaccctgagcagctcatcaatggcaaggaggatgcagctaacaactttgcccgtggtcactacaccattggcaaggagattgttgatctgtgccttgaccgcatcaggaagcttgctgacaactgcactggtctccaaggtttccttgtgttcaacgctgttggaggtggaacgggctctggtcttggttcccttctcctggagcgcctttctgtggactatggcaagaagtccaagcttgggttcactgtgtacccatcccctcaggtctccacctctgtggttgagccatacaacagtgtcctctctacccactccctccttgagcacactgatgttgctgttctgcttgataatgaggccatctatgacatctgccgccgctcccttgacattgagcgcccaacctacaccaacctcaacaggcttgtgtctcaggttatctcatccctgaccgcctccctgaggtttgatggtgctctgaacgtggatgtcaatgagttccagaccaaccttgtgccctacccaaggatccacttcatgctttcgtcctacgctccagtgatctctgcggagaaggcctaccatgagcaactctctgttgccgagatcaccaacagtgccttcgagccatcctccatgatggccaagtgcgaccctcgccacggcaagtacatggcctgctgcctcatgtaccgcggcgatgtcgtgcccaaggacgtgaacgccgccgtcgccaccatcaagaccaagcgcaccatccagttcgtggactggtgcccgacggggttcaagtgcggcatcaactaccagccgcccagcgtcgtccccagcggcgacctcgccaaggtgcagagggccgtgtgcatgatctccaactccaccagcgtcgtggaggtgttctcccgcatcgaccacaagttcgacctcatgtactccaagcgcgccttcgtccactggtacgtgggtgagggcatggaggagggtgagttctctgaggcccgtgaggatctcgccgcgttggagaaggactacgaggaggttggcgctgagtccgacgagaatgaggatggcgatgatggtgacgagtactag</cdnaseq>\|
−	AA = <aaseq>MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPSDRTVGG GDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGCYRQLFHPEQLINGKEDAANN FARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLD IERPTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVI SAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAT IKTKRTIQFVDWCPTGFKCGINYQPPSVVPSGDLAKVQRAVCMISNSTSVVEVFSRID HKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESDENEDGDDGDE Y</aaseq>\|
−	DNA = <dnaseqindica>126..218#1165..1399#1486..1856#1965..2621#aagccgagacaacgcagagaaaggcgtcttcgtactcgcctctctccgcgcctccgcgcttttcctcctcctctcccctctctcccttctccgccgccgtcgcagcatcaacccaatccgccgccatgagggagtgcatctcgatccacatcggccaggccggtatccaggtcgggaacgcgtgctgggagctctactgcctcgagcatggcatccaggtacggatccgcgtcccatctccctcaccccccgtgttcttcgtgcctgcttctgggtcagatctgggtggattcgcggttgttggatgtggggggctgtgtttatttgtcggtggatctggttgtctggatctgcgttttctctgtcgtagttagcggatctgatgaaatgtttagtgttcgtgtatactggtatggtggatctggtcctaggatgcgtggaatggatatatgtaggcgaattggaggatttattttgtgaattttgctgaaatgatagttctaaacactggatctgacctcgggatgctgttaaatgtggaaatcatggtcgatgctgtcatgaacatggtgttcttatggtagatctgagcaatgtatgtttcaaaattgtttgtcacatggaaatgctatggttctagatgcaatagaatgatacatgccgagatcccctctagttgatatgatagatcatgatgttttacagctatgtcatatgaatatgttcatttgttaccgatgtatttggatctacttaacatttccaaagcacgccgcgttctaattctagatctggtagtcatgtttgtacacgtcacccacctaatacaaatacatatgtctagtgtttggtgacactgcccgtcagatctgttttttccagatctgtggaacaaatactccacgcatgtatggtagttttgaaacgatcttgtatcttccattgttgtagtaacaactaaataaagtacaattgttcaattattgggaatcgtattttctgtagtgccgatgtacagcatattcatagatgtctatttaggaactcaaattttaaattgaggactagttatttattgtgggtcagtcttttgaattgtgttatcttgctgtactgaaataataatgtaccactaaggcgctaacatgtattttgtcctttcaggctgatggtcagatgcccagtgacaggactgttggtggaggtgatgatgctttcaacaccttcttcagtgagactggtgctgggaagcatgttccccgtgctgtatttgttgatcttgagcctactgtgattgatgaggtgaggactggttgctaccgccagctcttccaccctgagcagctcatcaatggcaaggaggatgcagctaacaactttgcccgtggtcactacaccagtgagttccattcttactaccacggtgctattttttttgttatgtggctaattacatgactaacttggggtgctaaatctttacagttggcaaggagattgttgatctgtgccttgaccgcatcaggaagcttgctgacaactgcactggtctccaaggtttccttgtgttcaacgctgttggaggtggaacgggctctggtcttggttcccttctcctggagcgcctttctgtggactatggcaagaagtccaagcttgggttcactgtgtacccatcccctcaggtctccacctctgtggttgagccatacaacagtgtcctctctacccactccctccttgagcacactgatgttgctgttctgcttgataatgaggccatctatgacatctgccgccgctcccttgacattgagcgcccaacctacaccaacctcaacaggcttgtgtctcaggtacagtcttgtatccttgcaatgatctcaaattctctgctatgttaattcactgccatttcttgtttgtgctgttctctaaccaacttgtttattgctaatgtgcaggttatctcatccctgaccgcctccctgaggtttgatggtgctctgaacgtggatgtcaatgagttccagaccaaccttgtgccctacccaaggatccacttcatgctttcgtcctacgctccagtgatctctgcggagaaggcctaccatgagcaactctctgttgccgagatcaccaacagtgccttcgagccatcctccatgatggccaagtgcgaccctcgccacggcaagtacatggcctgctgcctcatgtaccgcggcgatgtcgtgcccaaggacgtgaacgccgccgtcgccaccatcaagaccaagcgcaccatccagttcgtggactggtgcccgacggggttcaagtgcggcatcaactaccagccgcccagcgtcgtccccagcggcgacctcgccaaggtgcagagggccgtgtgcatgatctccaactccaccagcgtcgtggaggtgttctcccgcatcgaccacaagttcgacctcatgtactccaagcgcgccttcgtccactggtacgtgggtgagggcatggaggagggtgagttctctgaggcccgtgaggatctcgccgcgttggagaaggactacgaggaggttggcgctgagtccgacgagaatgaggatggcgatgatggtgacgagtactagaggagtcgtcgtcgtctgggggcttgatgttctgtgtgtcaaggcctgattgataactgctgctatcccatgatctgccagtgtggagttatcctgttgccgtgtgcgtgtgtcttcgagacatttgcttgtggtgatctgatgtttggggcttaatgggcttacaaccctcgttgttgtaacctgtgtgccctgttttatgtgagaccgcttcgtcacttataatatgcgcgtttgttcaattttatgtttgtttcttgtgt</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001057667.1 RefSeq:Os03g0726100]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 3]]~~
−	~~[[Category:~~Chromosome 3]]

← Older revision		Revision as of 19:42, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os03g0726100\|		GeneName = Os03g0726100\|