Os03g0819600 - Revision history

Chenxi Sang: /* Labs working on this gene */

2016-10-21T14:00:22Z

‎Labs working on this gene

Chenxi Sang: /* Phenotypic analysis */

2016-10-21T14:00:06Z

‎Phenotypic analysis

Chenxi Sang: /* Phenotypic analysis */

2016-10-21T13:59:54Z

‎Phenotypic analysis

Chenxi Sang at 13:57, 21 October 2016

2016-10-21T13:57:51Z

Chenxi Sang: /* Function */

2016-10-21T13:55:34Z

‎Function

Chenxi Sang: /* Annotated Information */

2016-10-21T13:54:36Z

‎Annotated Information

Chenxi Sang at 13:53, 21 October 2016

2016-10-21T13:53:45Z

192.168.72.52 at 07:35, 14 May 2015

2015-05-14T07:35:02Z

124.16.129.48 at 19:45, 22 July 2012

2012-07-22T19:45:46Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os03g0819600| Description = Chalcone isomerase (EC 5.5.1.6)| Version = NM_001058249.1 GI:115456226 GeneID:4334588| Length = 1131 bp| Definition..."

2012-06-24T13:06:48Z

Created page with "{{JaponicaGene| GeneName = Os03g0819600| Description = Chalcone isomerase (EC 5.5.1.6)| Version = NM_001058249.1 GI:115456226 GeneID:4334588| Length = 1131 bp| Definition..."

New page

{{JaponicaGene|
GeneName = Os03g0819600|
Description = Chalcone isomerase (EC 5.5.1.6)|
Version = NM_001058249.1 GI:115456226 GeneID:4334588|
Length = 1131 bp|
Definition = Oryza sativa Japonica Group Os03g0819600, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:35245241..35246371|
CDS = 35245359..35245577,35245659..35245882,35245959..35246120,35246218..35246314|
GCID = <gbrowseImage1>
name=NC_008396:35245241..35246371
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:35245241..35246371
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccgggctccggccacgcccacttcctcgccggcgcaggtgtgaggggagtggagatcgccggcaacttcatcaagttcacggccatcggcgtgtacctggaggagggcgcggccgtgccggcgctggccaagaagtgggccggcaagtccgccgacgagctcgccgccgacgccgccttcttccgcgacgtcgtcaccggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcaccggcgagcagtactcggacaaggtgacggagaactgcgtcgcggcgtggaaggccgccggcgtgtacacggacgccgagggcgcggccgcggacaagttcaaggaggccttcaagccccacagcttccctccgggcgcgtccatcctcttcacccactccccgcccggcgtcctcaccgtcgcgttctccaaggactcgtcggtgccagagggcgccgtggcggcggcggcgatcgagaacagggcgctctgcgaggcggtgctggattccatcatcggcgagcacggggtctcgccggcggcgaagcggagcatagcggcccgcgtctcgcagctcctgaaggcggaatccaccggcgacgtggcggcggcggagcccgcgccggtgtccgcgtga</cdnaseq>|
AA = <aaseq>MAAVSEVEVDGVVFPPVARPPGSGHAHFLAGAGVRGVEIAGNFI KFTAIGVYLEEGAAVPALAKKWAGKSADELAADAAFFRDVVTGDFEKFTRVTMILPLT GEQYSDKVTENCVAAWKAAGVYTDAEGAAADKFKEAFKPHSFPPGASILFTHSPPGVL TVAFSKDSSVPEGAVAAAAIENRALCEAVLDSIIGEHGVSPAAKRSIAARVSQLLKAE STGDVAAAEPAPVSA</aaseq>|
DNA = <dnaseqindica>795..1013#490..713#252..413#58..154#acaaaatttgtctccacgttttcttggatagttagttgctcacccgatcctgtatccatggcggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccgggctccggccacgcccacttcctcgccggcgcaggtttgtttgtgtttgcgttgtgtgttccgtgtcagtggagaagtggaaatgccgtgcaagcgaacttgcttgctggtttgatcgatccgtcgtgcaggtgtgaggggagtggagatcgccggcaacttcatcaagttcacggccatcggcgtgtacctggaggagggcgcggccgtgccggcgctggccaagaagtgggccggcaagtccgccgacgagctcgccgccgacgccgccttcttccgcgacgtcgtcaccggtaactcatctcgctaaatttgttgctcgtgtcgacgggcggcgcgacatgacatgggcgtcgtctcgcgttgcaggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcaccggcgagcagtactcggacaaggtgacggagaactgcgtcgcggcgtggaaggccgccggcgtgtacacggacgccgagggcgcggccgcggacaagttcaaggaggccttcaagccccacagcttccctccgggcgcgtccatcctcttcacccactccccgcccggcgtcctcaccgtgagcaccaatccgttgttgccgattactccgatgcgtgatttgcttcgtgatttggactccgtttgattcgatttgcaggtcgcgttctccaaggactcgtcggtgccagagggcgccgtggcggcggcggcgatcgagaacagggcgctctgcgaggcggtgctggattccatcatcggcgagcacggggtctcgccggcggcgaagcggagcatagcggcccgcgtctcgcagctcctgaaggcggaatccaccggcgacgtggcggcggcggagcccgcgccggtgtccgcgtgaaaatcgagctgcgaattaaccgcgcatctaagagctcctcctacacttcttgtacacttctactgccctcgtgtttgacaatgaaataaaaggaaaggagaaatcgcggctgttcttc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058249.1 RefSeq:Os03g0819600]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

@@ Line 21: / Line 21: @@
 ==Labs working on this gene==
-* State Key Laboratory of Plant Genomics, Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, People’s Republic of China
+* State Key Laboratory of Plant Genomics, Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, People's Republic of China
-* State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 310006, People’s Republic of China
+* State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 310006, People's Republic of China
 ==References==

@@ Line 12: / Line 12: @@
 * As shown in Fig. 2c, gh1 panicles before heading were not significantly different from wild-type panicles at the same stage. Once the panicles grew out of the sheaths, golden pigmentation of hulls occurred conspicuously in gh1 panicles, exhibiting a marked difference from the green wild-type panicles (Fig. 2d).
 * Visual inspection of cross sections of wild-type and gh1 spikelets at the heading stages revealed that the pigments in gh1 hulls were deposited mainly in the epidermal layer and the underlying parenchyma cells (Fig. 2e, f).
 [[File:156-Os03g0819600.png|center|thumb|727px|'''Figure 2.''' ''Pigmented hulls and internodes of the gh1 mutant.<ref name="ref1" />.'']]

@@ Line 12: / Line 12: @@
 * As shown in Fig. 2c, gh1 panicles before heading were not significantly different from wild-type panicles at the same stage. Once the panicles grew out of the sheaths, golden pigmentation of hulls occurred conspicuously in gh1 panicles, exhibiting a marked difference from the green wild-type panicles (Fig. 2d).
 * Visual inspection of cross sections of wild-type and gh1 spikelets at the heading stages revealed that the pigments in gh1 hulls were deposited mainly in the epidermal layer and the underlying parenchyma cells (Fig. 2e, f).
 You can also add sub-section(s) at will.

@@ Line 8: / Line 8: @@
 * The '''''OsCHI''''' gene was indispensable for flux of the flavonoid pathway in rice.
-===Expression===
+===Phenotypic analysis===
-Please input expression information here.
+* Compared to the wild-type variety Zhefu802 (an indica cultivar), gh1 exhibited an obvious golden pigmentation in the panicle and internode at maturity, while coloration of the hull was the most significant phenotype (Fig 2a, b).
+* As shown in Fig. 2c, gh1 panicles before heading were not significantly different from wild-type panicles at the same stage. Once the panicles grew out of the sheaths, golden pigmentation of hulls occurred conspicuously in gh1 panicles, exhibiting a marked difference from the green wild-type panicles (Fig. 2d).
-===Evolution===
+* Visual inspection of cross sections of wild-type and gh1 spikelets at the heading stages revealed that the pigments in gh1 hulls were deposited mainly in the epidermal layer and the underlying parenchyma cells (Fig. 2e, f).
 You can also add sub-section(s) at will.
@@ Line 21: / Line 20: @@
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]

@@ Line 5: / Line 5: @@
 *'''''Os03g0819600''''' '''''<=>''''' '''''gh1,OsCHI,Cfi,CHI'''''
 ===Function===
-Please input function information here.
+* '''''OsCHI''''' encodes a protein functionally and structurally conserved to chalcone isomerases in other species.
 ===Expression===

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice '''''Os03g0819600''''' was reported as '''''gh1''''' in 2012 <ref name="ref1" /> by researchers from China.
 ==Annotated Information==
@@ Line 14: / Line 14: @@
 ==Labs working on this gene==
-Please input related labs here.
+* State Key Laboratory of Plant Genomics, Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, People’s Republic of China
 ==References==

← Older revision		Revision as of 07:35, 14 May 2015
Line 20:		Line 20:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]
−	~~GeneName = Os03g0819600\|~~
−	~~Description = Chalcone isomerase (EC 5.5.1.6)\|~~
−	~~Version = NM_001058249.1 GI:115456226 GeneID:4334588\|~~
−	~~Length = 1131 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os03g0819600, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 3\|Chromosome 3]]\|~~
−	~~AP = Chromosome 3:35245241..35246371\|~~
−	~~CDS = 35245359..35245577,35245659..35245882,35245959..35246120,35246218..35246314\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008396:35245241..35246371~~
−	~~source=RiceChromosome03~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008396:35245241..35246371~~
−	~~source=RiceChromosome03~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atggcggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccgggctccggccacgcccacttcctcgccggcgcaggtgtgaggggagtggagatcgccggcaacttcatcaagttcacggccatcggcgtgtacctggaggagggcgcggccgtgccggcgctggccaagaagtgggccggcaagtccgccgacgagctcgccgccgacgccgccttcttccgcgacgtcgtcaccggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcaccggcgagcagtactcggacaaggtgacggagaactgcgtcgcggcgtggaaggccgccggcgtgtacacggacgccgagggcgcggccgcggacaagttcaaggaggccttcaagccccacagcttccctccgggcgcgtccatcctcttcacccactccccgcccggcgtcctcaccgtcgcgttctccaaggactcgtcggtgccagagggcgccgtggcggcggcggcgatcgagaacagggcgctctgcgaggcggtgctggattccatcatcggcgagcacggggtctcgccggcggcgaagcggagcatagcggcccgcgtctcgcagctcctgaaggcggaatccaccggcgacgtggcggcggcggagcccgcgccggtgtccgcgtga</cdnaseq>\|
−	AA = <aaseq>MAAVSEVEVDGVVFPPVARPPGSGHAHFLAGAGVRGVEIAGNFI KFTAIGVYLEEGAAVPALAKKWAGKSADELAADAAFFRDVVTGDFEKFTRVTMILPLT GEQYSDKVTENCVAAWKAAGVYTDAEGAAADKFKEAFKPHSFPPGASILFTHSPPGVL TVAFSKDSSVPEGAVAAAAIENRALCEAVLDSIIGEHGVSPAAKRSIAARVSQLLKAE STGDVAAAEPAPVSA</aaseq>\|
−	DNA = <dnaseqindica>795..1013#490..713#252..413#58..154#acaaaatttgtctccacgttttcttggatagttagttgctcacccgatcctgtatccatggcggccgtgtcggaggtggaggtcgacggcgtcgtgttcccgccggtggcccgcccgccgggctccggccacgcccacttcctcgccggcgcaggtttgtttgtgtttgcgttgtgtgttccgtgtcagtggagaagtggaaatgccgtgcaagcgaacttgcttgctggtttgatcgatccgtcgtgcaggtgtgaggggagtggagatcgccggcaacttcatcaagttcacggccatcggcgtgtacctggaggagggcgcggccgtgccggcgctggccaagaagtgggccggcaagtccgccgacgagctcgccgccgacgccgccttcttccgcgacgtcgtcaccggtaactcatctcgctaaatttgttgctcgtgtcgacgggcggcgcgacatgacatgggcgtcgtctcgcgttgcaggcgatttcgagaagttcacgagggtgacgatgatcctgccgctcaccggcgagcagtactcggacaaggtgacggagaactgcgtcgcggcgtggaaggccgccggcgtgtacacggacgccgagggcgcggccgcggacaagttcaaggaggccttcaagccccacagcttccctccgggcgcgtccatcctcttcacccactccccgcccggcgtcctcaccgtgagcaccaatccgttgttgccgattactccgatgcgtgatttgcttcgtgatttggactccgtttgattcgatttgcaggtcgcgttctccaaggactcgtcggtgccagagggcgccgtggcggcggcggcgatcgagaacagggcgctctgcgaggcggtgctggattccatcatcggcgagcacggggtctcgccggcggcgaagcggagcatagcggcccgcgtctcgcagctcctgaaggcggaatccaccggcgacgtggcggcggcggagcccgcgccggtgtccgcgtgaaaatcgagctgcgaattaaccgcgcatctaagagctcctcctacacttcttgtacacttctactgccctcgtgtttgacaatgaaataaaaggaaaggagaaatcgcggctgttcttc</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058249.1 RefSeq:Os03g0819600]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 3]]~~
−	~~[[Category:~~Chromosome 3]]

← Older revision		Revision as of 19:45, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os03g0819600\|		GeneName = Os03g0819600\|