Os04g0301500 - Revision history

Xysj1986 at 00:55, 22 March 2017

2017-03-22T00:55:18Z

192.168.72.52: /* Structured Information */

2015-06-12T07:01:25Z

‎Structured Information

Mojingkitty: /* Annotated Information */

2014-05-29T07:54:11Z

‎Annotated Information

Mojingkitty: /* Evolution */

2014-05-29T07:50:34Z

‎Evolution

Mojingkitty: /* References */

2014-05-29T07:45:36Z

‎References

Mojingkitty: /* Labs working on this gene */

2014-05-29T07:38:59Z

‎Labs working on this gene

Mojingkitty: /* Annotated Information */

2014-05-29T07:36:46Z

‎Annotated Information

Mojingkitty: /* Introduction */

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‎Introduction

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Mojingkitty: /* Annotated Information */

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‎Annotated Information

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-Please input one-sentence summary here.
+The rice '''Os04g0301500''' was reported as '''''OsbHLH006''''' in 2006 <ref name="ref1" /> by researchers from the China. It is a member of bHLH transcription factor gene family.
-[[File:Phenotype.jpg]]==Annotated Information==
+==Annotated Information==
-The RERJ1 cDNA is 1353 bp in length, with an open reading frame (ORF) encoding a putative polypeptide of 310 amino acid residues. The nucleotide sequence data
+===Gene Symbol===
-for the RERJ1 cDNA reported here will appear in the GSDB, DDJB, EMBL, and NCBI nucleotide sequence databases under Accession No. AB040744.
+*'''''Os04g0301500''''' '''''<=>''''' '''''OsbHLH006'''''
 ===Function===
-Please input function information here.
+* The basic/helix-loop-helix (bHLH) transcription factors and their homologs form a large family in plant and animal genomes.
-RERJ1, a JA-inducible transcription factor in rice, is up-regulated by exposure to wounding and drought stress.RERJ1 has self-activating ability. It is a upregulated genes in plants under the drought stress and the mechanical damage.And after mechanical damage, its expression is affected by a JA-dependent manner. RERJ1 only  induced in place where mechanical damaged, but the drought make it expressed throughout the leaf area. Therefore, RERJ1 as a transcriptional activator can regulate gene expression induced by stress, and this stress related with JA accumulation areas.RERJ1 plays a role as a transcriptional activator for regulating stress-inducible gene expression, with a strong correlation to JA accumulation in the stressed region.
+* rice bHLH proteins can potentially participate in a variety of combinatorial interactions, endowing them with the capacity to regulate a multitude of transcriptional programs.
-The plant bHLH proteins that have been characterized to date function in transcriptional regulation associated with several physiological phenomena, including anthocyanin pigmentation , DELILA in snapdragon. The biological functions of most plant bHLH proteins remain unclear.The molecular cloning and characterization
+* bHLHs represent key regulatory components in transcriptional networks controlling a number of biological processes.
-of the JA-responsive rice gene RERJ1, which encodes a bHLH protein.
+* Plant bHLHs have been reported to function in light signaling, hormone signaling, wound and drought stress responses, symbiotic ammonium transport, shoot branching, root, fruit and flower development, et al. <ref name="ref1" /> <ref name="ref2" /> <ref name="ref3" />
 ===Expression===
-Please input expression information here.
+* Similar expression patterns suggest functional conservation between some rice bHLH genes and their close Arabidopsis homologs.
-The expression of RERJ1 after wounding is regulated in a JA-dependent manner in rice. RERJ1 expression was induced only at the region of injury after wounding, whereas expression was induced in the entire leaf after drought. According to JA measurements of stressed leaves, high accumulation of endogenous JA was only detected around the wound site in a rice leaves, whereas the drought treatment led to uniform accumulation of JA in the entire leaf, suggesting that RERJ1 will be a useful marker gene for studies on localization of JA in rice.
 ===Evolution===
-Please input evolution information here.
+* The studies of researchers indicate that the ancient bHLH gene family has likely expanded considerably during flowering plant evolution to include many relatively young members, allowing both the conservation and divergence of gene function.
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
-Please input related labs here.
+* Shanghai Jiao Tong University-Shanghai Institutes for Biological Sciences-Pennsylvania State University Joint Center for Life Sciences, Key Laboratory of Microbial Metabolism, Ministry of Education, School of Life Science and Biotechnology, Shanghai Jiao Tong University, Shanghai, People’s Republic of China, 200240
-	Plant materials
+* School of Life Science, Shanghai University, Shanghai, People’s Republic of China, 200444
-	Microscopic observation
+* School of Life Science, Xiamen University, Xiamen, People’s Republic of China, 361005
-	Scanning electron microscopy observation
+* Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, People’s Republic of China, 200032
-	Positional cloning
+* Department of Biology and the Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802
 ==References==
-Please input cited references here.
+<references>
-.Koji Miyamoto;Takafumi Shimizu;Susumu Mochizuki;Yoko Nishizawa;Eiichi Minami;Hideaki Nojiri;Hisakazu Yamane;Kazunori Okada
+* <ref name="ref1">
-  Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice
+Li X, Duan X, Jiang H, Sun Y, Tang Y, Yuan Z, Guo J, Liang W, Chen L, Yin J,
-  Protoplasma, 2013, 250(1): 241-249
+Ma H, Wang J, Zhang D. Genome-wide analysis of basic/helix-loop-helix
-.J.G. Turner, C. Ellis, A. Devoto, The jasmonate signal pathway,Plant Cell 14 (2002) S153–S164.
+transcription factor family in rice and Arabidopsis. Plant Physiol. 2006
-.Kyoko Kiribuchia, Miho Sugimoria, Masayoshi Takedaa, Takashi Otani ,RERJ1, a jasmonic acid-responsive gene from rice, encodes a basic helix–loop–helix protein,Biochemical and Biophysical Research Communications 325 (2004) 857–863
+Aug;141(4):1167-84. PubMed PMID: 16896230; PubMed Central PMCID: PMC1533929.
-.M. Sugimori, K. Kiribuchi, C. Akimoto, T. Yamaguchi, E.Minami, N. Shibuya, H. Sobajima, E.-U. Cho, N. Kobashi, H.Nojiri, T. Omori, M. Nishiyama, H. Yamane, Cloning and characterization of cDNAs for the jasmonic acid-responsive genes RRJ1 and RRJ2 in suspension-cultured rice cells, Biosci. Biotechnol.Biochem. 66 (2002) 1140–1142.
+</ref>
-.C. Murre, P.S. McCaw, D. Baltimore, A new DNA binding and dimerization motif in immunoglobulin enhancer binding, daughterless,MyoD, and myc proteins, Cell 56 (1989) 777–783.
+* <ref name="ref2">
-.W.R. Atchley, W.M. Fitch, A natural classification of the basic helix–loop–helix class of transcription factors, Proc. Natl. Acad.Sci. USA 94 (1997) 5172–5176.
+Carretero-Paulet L, Galstyan A, Roig-Villanova I, Martínez-García JF,
-.V. Ledent, O. Paquet, M. Vervoot, Phylogenetic analysis of the human basic helix–loop–helix proteins, Genome Biol. 3 (2002) 1–18.
+Bilbao-Castro JR, Robertson DL. Genome-wide classification and evolutionary
 ==Structured Information==

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 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]

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 Please input one-sentence summary here.
-==Annotated Information==
+[[File:Phenotype.jpg]]==Annotated Information==
 The RERJ1 cDNA is 1353 bp in length, with an open reading frame (ORF) encoding a putative polypeptide of 310 amino acid residues. The nucleotide sequence data
 for the RERJ1 cDNA reported here will appear in the GSDB, DDJB, EMBL, and NCBI nucleotide sequence databases under Accession No. AB040744.

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 GMYC1 in gerbera
 anthocyanin pigmentation/trichome differentiation in Arabidopsis, phytochrome signaling(PIF3 and HFR1), globulin expression (PG1in Phaseolus vulgaris) , and symbiotic ammonium transport.
 You can also add sub-section(s) at will.

@@ Line 43: / Line 43: @@
 ==References==
 Please input cited references here.
-Koji Miyamoto;Takafumi Shimizu;Susumu Mochizuki;Yoko Nishizawa;Eiichi Minami;Hideaki Nojiri;Hisakazu Yamane;Kazunori Okada
+.Koji Miyamoto;Takafumi Shimizu;Susumu Mochizuki;Yoko Nishizawa;Eiichi Minami;Hideaki Nojiri;Hisakazu Yamane;Kazunori Okada
    Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice
    Protoplasma, 2013, 250(1): 241-249
 ==Structured Information==

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 == Introduction ==
-===
 ===Function===