Os04g0433800 - Revision history

Chenxi Sang: /* References */

2016-10-21T03:20:31Z

‎References

Chenxi Sang: /* Expression */

2016-10-21T03:20:13Z

‎Expression

Chenxi Sang at 03:19, 21 October 2016

2016-10-21T03:19:56Z

192.168.72.52 at 07:54, 14 May 2015

2015-05-14T07:54:17Z

124.16.129.48 at 19:53, 22 July 2012

2012-07-22T19:53:12Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os04g0433800| Description = ATP-dependent DNA helicase RecQ family protein| Version = NM_001059373.2 GI:297602777 GeneID:4335888| Length = 2889 ..."

2012-06-24T11:10:24Z

Created page with "{{JaponicaGene| GeneName = Os04g0433800| Description = ATP-dependent DNA helicase RecQ family protein| Version = NM_001059373.2 GI:297602777 GeneID:4335888| Length = 2889 ..."

New page

{{JaponicaGene|
GeneName = Os04g0433800|
Description = ATP-dependent DNA helicase RecQ family protein|
Version = NM_001059373.2 GI:297602777 GeneID:4335888|
Length = 2889 bp|
Definition = Oryza sativa Japonica Group Os04g0433800, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
AP = Chromosome 4:21569256..21572144|
CDS = 21571220..21571366,21571496..21571657,21571857..21571937,21572032..21572142|
GCID = <gbrowseImage1>
name=NC_008397:21569256..21572144
source=RiceChromosome04
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008397:21569256..21572144
source=RiceChromosome04
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atccactttggagagatgtttaatccttcatgttgtgcaaaaacatgtgataattgcttgaaagagttgagatgggtcgaaaaagatgtgaccaacattgctagacaattggttgatctggtaatgatgacaaagcaaacatattcaactactcatattctcgaagtatacagaggttcagtaaaccaaaatgtcaagaagcaccgccatgatactttgagtcttcatggagctggaaagcatctagctaaaggtgaagcagcgagaatattgcgccatctagtaattgaggaaatactcattgaggatgtcaaaaagagcgaaaactatggatctgtatcatctgtcttaaagactaatcataagaaaagtggtgatcttctctctggcaagcacaacgttgtcctcaagtttgttttcttcctaaaacatattactgaaaattgtttgtccttttctcattttgctcgacacatattgctgaaaattatccttttttaa</cdnaseq>|
AA = <aaseq>IHFGEMFNPSCCAKTCDNCLKELRWVEKDVTNIARQLVDLVMMT KQTYSTTHILEVYRGSVNQNVKKHRHDTLSLHGAGKHLAKGEAARILRHLVIEEILIE DVKKSENYGSVSSVLKTNHKKSGDLLSGKHNVVLKFVFFLKHITENCLSFSHFARHIL LKIILF</aaseq>|
DNA = <dnaseqindica>779..925#488..649#208..288#3..113#tgatccactttggagagatgtttaatccttcatgttgtgcaaaaacatgtgataattgcttgaaagagttgagatgggtcgaaaaagatgtgaccaacattgctagacaattggtatgtggtcagctgagctctgtgccccttctaaacaacctaacacatgcacagacctttgtctgaaactgacattctcacattgtttctttaggttgatctggtaatgatgacaaagcaaacatattcaactactcatattctcgaagtatacagaggttcagtaaaccaaaatgtatgtattatgcaagtaattaatgtcatttggttctgaggttcattgttatgataacatcaccagaggctacttttagtgccatggaaatatctccatggtccacaacacatcttggtttactgccggatatgtcatgttggcagggaaaaccacatactagtccattatttgaaatttatctgttactactaatcaggtcaagaagcaccgccatgatactttgagtcttcatggagctggaaagcatctagctaaaggtgaagcagcgagaatattgcgccatctagtaattgaggaaatactcattgaggatgtcaaaaagagcgaaaactatggatctgtatcatctgtcttaaaggtgaaatataccctgcacctataatggtttactttgagacaaatttactaggtttttccttttctttaatcttctagtctctaccttggtctaatacatagttttcttttgtgaatgtttgttaagcagactaatcataagaaaagtggtgatcttctctctggcaagcacaacgttgtcctcaagtttgttttcttcctaaaacatattactgaaaattgtttgtccttttctcattttgctcgacacatattgctgaaaattatccttttttaatcacatctttcttttgcatatgaacttcacatctaaaatctgttggaatttaatcccatgttatttttttttaaaaaaaattagatgtacagcttgatactggtaaagagttgttttgactgttactcccgccagggccacaaataagtgttgttttggacaatggcacggtcactaatacacttctattactaattactagtttaaaacttatgaaaaaatatatcaaaggtataatgttttgaaacaaattttgaagatgaatataacaaaaacattttcaaaagttgaatcaaagtatttaaaagcgcaattgattgtcaaagtttaaacatgttaacacattccaaaacatcacttatttatgactggagatagtattaggagctttcctagttcatcctaggtttgaacatccgagttcattatggttttgcaattttgactgctttggggtcttcaatacaagcagccatatatttattccacttgccctcattgaatgatatagttatcttgttgcctaactgattactgttgcaaattcacaagggaaagtgtgtgtataaaagtctctagagttgcttatgtttccatgatgcagggtgttgttcccttgtgttatttaacgaatacaattttgcattctgggtgaccaaaaaatagtttgtaaactacaatctactttttttagagtaatttctttatcctcttatcttgcaggttccccactcctgagaaggctcctaagatgggtgtactcgatgaatcgtcagttccacgaattaataagactaatcaacagagtcaagtggacggggtagtggctgtggctctttagttataaaagctactacttcagtatttttgtcagtaattgtttttgttatgctataatggctattttcattaattgcagagccttgcagccgagctttatgaagctttgcaatgccttaggactcagataatggatgaaaatccacaattattggcataccacatatttaagtaagttatatgttatgcattttgttgtggcacagaactcactgacttataacgtggttcttattttttaacctacagaaacgagacattgaaggaaatcagcaaccgaatgccaagaacgaaagaggaacttgtggagataaatggcatcggcaagtaatgactctaccccatggcacaatgtaattttgacaagcagttttcagaagtagagcaagaattatatttgtttttcacatgcttttcatccaggaacaagctgaacaagtacggggaccgtgtgcttgcaaccatagaggatttcctcgccagatatccaaatgcgaccaggaaaaccagcagcggcggcagcaacgagcacagcgaggcggtcaagaagcgaagaggcttctccgtcaccaacacctctaccaactgtgacgactttgaggaacgcacggtccagtccaagaaacgcgctgcaaagacacgtacaaggcaggaaatatctgatgctgccagcatcgtccaggacgtccgctacatagatcttgagctagatggttgtgaacaagtcaatgaagtgccatacagtgtacaaaagcctgtggcttctggtagggttttacctgcgtggcagtccgccagaatagcctagggttaacaccccctagtagtttctaatttatgtgaagaatttatatgcattaagtaggatcctaggctaaccccattgagctttatgtaggccttgggccaactacttgtaagatggcaccaaccagaccacatgttaggttgcttctgaacatatatggtagtagtccttttcagtatagttcccgtagcgcatgtaactaacatgatattactatggcaaattttgatgtcaacagcttcaggaagtggacatcgaaaggtcctagtactgctgtaagttgattatttatagatgagccttacgcttgtttttt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001059373.2 RefSeq:Os04g0433800]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 4]]
[[Category:Chromosome 4]]

@@ Line 32: / Line 32: @@
 </ref>
 </references>
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]

@@ Line 10: / Line 10: @@
 * '''''Osrecql4''''' mutant plants showed hypersensitivity to DNA damaging agents and enhanced frequency of HR compared to wild-type (WT) plants.
 ===Expression===
-* Expression of OsRecQl4 was analyzed by northern blot in 7-day-old seedlings of the japonica-type rice cultivars Dongjin or Nipponbare. Using probe A (Figure 1A), relatively strong signals were observed in the basal parts of shoots (BS, as defined in Figure 1B) including the shoot apical meristem (SAM), and weak signals were observed in the root (R). No signal was detected in the lower (LS) or upper (US) shoot (Figure 1B).
+* Expression of '''''OsRecQl4''''' was analyzed by northern blot in 7-day-old seedlings of the japonica-type rice cultivars Dongjin or Nipponbare. Using probe A (Figure 1A), relatively strong signals were observed in the basal parts of shoots (BS, as defined in Figure 1B) including the shoot apical meristem (SAM), and weak signals were observed in the root (R). No signal was detected in the lower (LS) or upper (US) shoot (Figure 1B).
 * '''''OsRecQl4''''' was highly expressed in the RAM expression of OsRecQl4 was restricted to meristematic tissues.

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice '''''Os04g0433800''''' was reported as '''''OsRecQl4''''' in 2013 <ref name="ref1" /> by researchers from Japan.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+* '''''OsRecQl4''''' plays an important role as a caretaker, maintaining genome stability during DNA replication stress in the rice meristem.
+===Phenotypic analysis===
 ===Expression===
-Please input expression information here.
+* Expression of OsRecQl4 was analyzed by northern blot in 7-day-old seedlings of the japonica-type rice cultivars Dongjin or Nipponbare. Using probe A (Figure 1A), relatively strong signals were observed in the basal parts of shoots (BS, as defined in Figure 1B) including the shoot apical meristem (SAM), and weak signals were observed in the root (R). No signal was detected in the lower (LS) or upper (US) shoot (Figure 1B).
+* '''''OsRecQl4''''' was highly expressed in the RAM expression of OsRecQl4 was restricted to meristematic tissues.
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
-Please input related labs here.
+* Plant Genome Engineering Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]

← Older revision		Revision as of 07:54, 14 May 2015
Line 20:		Line 20:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]
−	~~GeneName = Os04g0433800\|~~
−	~~Description = ATP-dependent DNA helicase RecQ family protein\|~~
−	~~Version = NM_001059373.2 GI:297602777 GeneID:4335888\|~~
−	~~Length = 2889 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os04g0433800, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 4\|Chromosome 4]]\|~~
−	~~AP = Chromosome 4:21569256..21572144\|~~
−	~~CDS = 21571220..21571366,21571496..21571657,21571857..21571937,21572032..21572142\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008397:21569256..21572144~~
−	~~source=RiceChromosome04~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008397:21569256..21572144~~
−	~~source=RiceChromosome04~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atccactttggagagatgtttaatccttcatgttgtgcaaaaacatgtgataattgcttgaaagagttgagatgggtcgaaaaagatgtgaccaacattgctagacaattggttgatctggtaatgatgacaaagcaaacatattcaactactcatattctcgaagtatacagaggttcagtaaaccaaaatgtcaagaagcaccgccatgatactttgagtcttcatggagctggaaagcatctagctaaaggtgaagcagcgagaatattgcgccatctagtaattgaggaaatactcattgaggatgtcaaaaagagcgaaaactatggatctgtatcatctgtcttaaagactaatcataagaaaagtggtgatcttctctctggcaagcacaacgttgtcctcaagtttgttttcttcctaaaacatattactgaaaattgtttgtccttttctcattttgctcgacacatattgctgaaaattatccttttttaa</cdnaseq>\|
−	AA = <aaseq>IHFGEMFNPSCCAKTCDNCLKELRWVEKDVTNIARQLVDLVMMT KQTYSTTHILEVYRGSVNQNVKKHRHDTLSLHGAGKHLAKGEAARILRHLVIEEILIE DVKKSENYGSVSSVLKTNHKKSGDLLSGKHNVVLKFVFFLKHITENCLSFSHFARHIL LKIILF</aaseq>\|
−	DNA = <dnaseqindica>779..925#488..649#208..288#3..113#tgatccactttggagagatgtttaatccttcatgttgtgcaaaaacatgtgataattgcttgaaagagttgagatgggtcgaaaaagatgtgaccaacattgctagacaattggtatgtggtcagctgagctctgtgccccttctaaacaacctaacacatgcacagacctttgtctgaaactgacattctcacattgtttctttaggttgatctggtaatgatgacaaagcaaacatattcaactactcatattctcgaagtatacagaggttcagtaaaccaaaatgtatgtattatgcaagtaattaatgtcatttggttctgaggttcattgttatgataacatcaccagaggctacttttagtgccatggaaatatctccatggtccacaacacatcttggtttactgccggatatgtcatgttggcagggaaaaccacatactagtccattatttgaaatttatctgttactactaatcaggtcaagaagcaccgccatgatactttgagtcttcatggagctggaaagcatctagctaaaggtgaagcagcgagaatattgcgccatctagtaattgaggaaatactcattgaggatgtcaaaaagagcgaaaactatggatctgtatcatctgtcttaaaggtgaaatataccctgcacctataatggtttactttgagacaaatttactaggtttttccttttctttaatcttctagtctctaccttggtctaatacatagttttcttttgtgaatgtttgttaagcagactaatcataagaaaagtggtgatcttctctctggcaagcacaacgttgtcctcaagtttgttttcttcctaaaacatattactgaaaattgtttgtccttttctcattttgctcgacacatattgctgaaaattatccttttttaatcacatctttcttttgcatatgaacttcacatctaaaatctgttggaatttaatcccatgttatttttttttaaaaaaaattagatgtacagcttgatactggtaaagagttgttttgactgttactcccgccagggccacaaataagtgttgttttggacaatggcacggtcactaatacacttctattactaattactagtttaaaacttatgaaaaaatatatcaaaggtataatgttttgaaacaaattttgaagatgaatataacaaaaacattttcaaaagttgaatcaaagtatttaaaagcgcaattgattgtcaaagtttaaacatgttaacacattccaaaacatcacttatttatgactggagatagtattaggagctttcctagttcatcctaggtttgaacatccgagttcattatggttttgcaattttgactgctttggggtcttcaatacaagcagccatatatttattccacttgccctcattgaatgatatagttatcttgttgcctaactgattactgttgcaaattcacaagggaaagtgtgtgtataaaagtctctagagttgcttatgtttccatgatgcagggtgttgttcccttgtgttatttaacgaatacaattttgcattctgggtgaccaaaaaatagtttgtaaactacaatctactttttttagagtaatttctttatcctcttatcttgcaggttccccactcctgagaaggctcctaagatgggtgtactcgatgaatcgtcagttccacgaattaataagactaatcaacagagtcaagtggacggggtagtggctgtggctctttagttataaaagctactacttcagtatttttgtcagtaattgtttttgttatgctataatggctattttcattaattgcagagccttgcagccgagctttatgaagctttgcaatgccttaggactcagataatggatgaaaatccacaattattggcataccacatatttaagtaagttatatgttatgcattttgttgtggcacagaactcactgacttataacgtggttcttattttttaacctacagaaacgagacattgaaggaaatcagcaaccgaatgccaagaacgaaagaggaacttgtggagataaatggcatcggcaagtaatgactctaccccatggcacaatgtaattttgacaagcagttttcagaagtagagcaagaattatatttgtttttcacatgcttttcatccaggaacaagctgaacaagtacggggaccgtgtgcttgcaaccatagaggatttcctcgccagatatccaaatgcgaccaggaaaaccagcagcggcggcagcaacgagcacagcgaggcggtcaagaagcgaagaggcttctccgtcaccaacacctctaccaactgtgacgactttgaggaacgcacggtccagtccaagaaacgcgctgcaaagacacgtacaaggcaggaaatatctgatgctgccagcatcgtccaggacgtccgctacatagatcttgagctagatggttgtgaacaagtcaatgaagtgccatacagtgtacaaaagcctgtggcttctggtagggttttacctgcgtggcagtccgccagaatagcctagggttaacaccccctagtagtttctaatttatgtgaagaatttatatgcattaagtaggatcctaggctaaccccattgagctttatgtaggccttgggccaactacttgtaagatggcaccaaccagaccacatgttaggttgcttctgaacatatatggtagtagtccttttcagtatagttcccgtagcgcatgtaactaacatgatattactatggcaaattttgatgtcaacagcttcaggaagtggacatcgaaaggtcctagtactgctgtaagttgattatttatagatgagccttacgcttgtttttt</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001059373.2 RefSeq:Os04g0433800]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 4]]~~
−	~~[[Category:~~Chromosome 4]]

← Older revision		Revision as of 19:53, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os04g0433800\|		GeneName = Os04g0433800\|