Os04g0560600 - Revision history

192.168.72.52: /* Structured Information */

2015-06-12T07:09:16Z

‎Structured Information

Zhangye at 15:43, 28 January 2015

2015-01-28T15:43:31Z

Zhangye: /* Knowledge Extension */

2015-01-07T06:16:32Z

‎Knowledge Extension

Zhangye: /* References */

2015-01-07T06:15:39Z

‎References

Zhangye at 06:14, 7 January 2015

2015-01-07T06:14:07Z

124.16.129.48 at 19:57, 22 July 2012

2012-07-22T19:57:25Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os04g0560600| Description = Similar to Calcium-dependent protein kinase 3 (Fragment)| Version = NM_001060083.1 GI:115459895 GeneID:4336653| Leng..."

2012-06-24T11:22:31Z

Created page with "{{JaponicaGene| GeneName = Os04g0560600| Description = Similar to Calcium-dependent protein kinase 3 (Fragment)| Version = NM_001060083.1 GI:115459895 GeneID:4336653| Leng..."

New page

{{JaponicaGene|
GeneName = Os04g0560600|
Description = Similar to Calcium-dependent protein kinase 3 (Fragment)|
Version = NM_001060083.1 GI:115459895 GeneID:4336653|
Length = 2549 bp|
Definition = Oryza sativa Japonica Group Os04g0560600, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
AP = Chromosome 4:28478209..28480757|
CDS = 28478209..28478268,28478351..28478450,28478675..28478802,28478882..28479049,28479129..28479241<br>,28479363..28479515,28479613..28479756,28480022..28480757|
GCID = <gbrowseImage1>
name=NC_008397:28478209..28480757
source=RiceChromosome04
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008397:28478209..28480757
source=RiceChromosome04
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgggcaactgcttcaccaagacgtacgagatacccatcacgtcgggcacgatgcggcggccggcgtcgaccgcggagcgcagcaaggcgcgtggcggcgatgagccggggacgtggcggcggccgagcttcccgaggcacggggccccgccgcaccggccgccgacgggctcgtcttcggcggcgggggcgctgtcccggagggcgtccggcggcggcggggagatgggccccgtgctgcagagggcgatggtgagcgtgcggtcgctgtaccagctggaccggaagctggggagcgggcagttcgggacgacgtacctgtgcacggagcgcgcgacggggaaccggtacgcgtgcaagtcggtgtcgaagcggaagctggtgcggcgcaccgacgtggacgacgtgcgccgggagatcaccatcctgcagcacctcagcgggcagcccaacatcgcggagttcaggggcgcgtacgaggacaacgaccacgtgcacctcgtcatggagttctgctccggcggcgagctgttcgaccgcatcacggccaaggggagctactccgagcggcaggccgctgccgtgtgccgggacatcctcaccgtcgttcacgtctgccacttcatgggggtcatacaccgcgacctcaagccggagaacttcctgctcgccagcgccgacgacgacgcgccgctcaaggccatcgacttcggactctccgtcttcatcgaagaaggtaaagtgtacaaggacattgtcggaagtgcttattatgtggcgccagaagtgttacaacgaaattatgggaaagaagccgacatctggagcgctggggtgatattgtatatccttctatgcgggacgcccccattctgggcagagacagagaaaggcatattcgatgctatactggtcaaccaagttgatttcagtaccagcccgtggccttcgatatctgaaagtgcaaaggatcttatcagacaaatgttacatagagatccccagaagaggattactgcatcgcaggccttagaacatcgatggctcaaagaaggcggtgcatctgacagacctatcgatagcgcagtcctatcaagaatgaagcaattcaaggcaatgaacaagttaaagcaattagctcttaaggtaattgcagagaacctatcaccagaggaaatcaagggcttgaaacagatgttcaataacatggatacagacagaagtggcacaatcacggttgaagaactgaaggttggtctgacaaagctaggatcaagaattagtgaagccgaggttcagaagcttatggaagcagttgacgtagacaagagtggcagcattgattactcggagttcctcacagctatgataaataagcataaactggaaaaggaggaggatttacttcgtgcatttcaacattttgacaaagataacagcgggtacataacaagagatgaactggaacaagccatggcagagtacggaatgggtgatgaagcaaacattaaacaagtactggatgaagttgacaaagacaaggacgggagaattgactatgaagagtttgtggaaatgatgaggaaaggaatacaaacctga</cdnaseq>|
AA = <aaseq>MGNCFTKTYEIPITSGTMRRPASTAERSKARGGDEPGTWRRPSF PRHGAPPHRPPTGSSSAAGALSRRASGGGGEMGPVLQRAMVSVRSLYQLDRKLGSGQF GTTYLCTERATGNRYACKSVSKRKLVRRTDVDDVRREITILQHLSGQPNIAEFRGAYE DNDHVHLVMEFCSGGELFDRITAKGSYSERQAAAVCRDILTVVHVCHFMGVIHRDLKP ENFLLASADDDAPLKAIDFGLSVFIEEGKVYKDIVGSAYYVAPEVLQRNYGKEADIWS AGVILYILLCGTPPFWAETEKGIFDAILVNQVDFSTSPWPSISESAKDLIRQMLHRDP QKRITASQALEHRWLKEGGASDRPIDSAVLSRMKQFKAMNKLKQLALKVIAENLSPEE IKGLKQMFNNMDTDRSGTITVEELKVGLTKLGSRISEAEVQKLMEAVDVDKSGSIDYS EFLTAMINKHKLEKEEDLLRAFQHFDKDNSGYITRDELEQAMAEYGMGDEANIKQVLD EVDKDKDGRIDYEEFVEMMRKGIQT</aaseq>|
DNA = <dnaseqindica>2490..2549#2308..2407#1956..2083#1709..1876#1517..1629#1243..1395#1002..1145#1..736#atgggcaactgcttcaccaagacgtacgagatacccatcacgtcgggcacgatgcggcggccggcgtcgaccgcggagcgcagcaaggcgcgtggcggcgatgagccggggacgtggcggcggccgagcttcccgaggcacggggccccgccgcaccggccgccgacgggctcgtcttcggcggcgggggcgctgtcccggagggcgtccggcggcggcggggagatgggccccgtgctgcagagggcgatggtgagcgtgcggtcgctgtaccagctggaccggaagctggggagcgggcagttcgggacgacgtacctgtgcacggagcgcgcgacggggaaccggtacgcgtgcaagtcggtgtcgaagcggaagctggtgcggcgcaccgacgtggacgacgtgcgccgggagatcaccatcctgcagcacctcagcgggcagcccaacatcgcggagttcaggggcgcgtacgaggacaacgaccacgtgcacctcgtcatggagttctgctccggcggcgagctgttcgaccgcatcacggccaaggggagctactccgagcggcaggccgctgccgtgtgccgggacatcctcaccgtcgttcacgtctgccacttcatgggggtcatacaccgcgacctcaagccggagaacttcctgctcgccagcgccgacgacgacgcgccgctcaaggccatcgacttcggactctccgtcttcatcgaagaaggtcagggtcgcgatatcacacataagctacactacctctttctttctttcttttcccccctttatcaacaccatgagttaatttggctgttagaaatgcacgggtctaaagagtagaaacgtacaatatcaaagcagatgcagaaatgcatcgatcatgcatgttgaaagatcttgcgagagataatgcacgtaccttagctcgccataacaagatatgtacaagctaaggtaaaatttccccaacaacaaaacaacaaatgcaggtaaagtgtacaaggacattgtcggaagtgcttattatgtggcgccagaagtgttacaacgaaattatgggaaagaagccgacatctggagcgctggggtgatattgtatatccttctatgcgggacgcccccattctgggcaggtaaatatccatagtacatatttactctttggctaattttgctacattctatcaagtatatcgtggagataattgtcaaatttgaatatctgcgcagagacagagaaaggcatattcgatgctatactggtcaaccaagttgatttcagtaccagcccgtggccttcgatatctgaaagtgcaaaggatcttatcagacaaatgttacatagagatccccagaagaggattactgcatcgcaggccttaggtagcacacctgaattgtgtttcgctattctaatctgcggttatgaatgtaaaatttatctgcaactgtatatatacatacagtgtagccaactctttaaatggatgtctccatgctgcagaacatcgatggctcaaagaaggcggtgcatctgacagacctatcgatagcgcagtcctatcaagaatgaagcaattcaaggcaatgaacaagttaaagcaattagctcttaaggtgagaatcctccttaacagggataactactatgctttggctaaaatcaaattgacacgctgcctcctttcatctcaaggtaattgcagagaacctatcaccagaggaaatcaagggcttgaaacagatgttcaataacatggatacagacagaagtggcacaatcacggttgaagaactgaaggttggtctgacaaagctaggatcaagaattagtgaagccgaggttcagaagcttatggaagcagtaagatcatttgcttttgctaactcttcgctgcaggtttagtttacaaaaggattttactagtgatactgtggtacaggttgacgtagacaagagtggcagcattgattactcggagttcctcacagctatgataaataagcataaactggaaaaggaggaggatttacttcgtgcatttcaacattttgacaaagataacagcgggtaaaataaattttgttagccaatgcacatccttttatctcgttcagcaccatgaataaagagctctaaattgaccaacactggaacttgttctgcgcaacaatcatgttcattgtgtaacgatgtctaacacatgctttccttgcatcatatttttcttgctataaactcgtttgttaaaaaatcagtatatattaacaagagaccatgaaaaacaattccaggtacataacaagagatgaactggaacaagccatggcagagtacggaatgggtgatgaagcaaacattaaacaagtactggatgaagttgacaaagacaaggtaaagcatacctaaagtattttattttcactaattagggtcattcccatggatttaattatttcctccatcgaattcacaggacgggagaattgactatgaagagtttgtggaaatgatgaggaaaggaatacaaacctga</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060083.1 RefSeq:Os04g0560600]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 4]]
[[Category:Chromosome 4]]

← Older revision		Revision as of 15:43, 28 January 2015
Line 1:		Line 1:
−	''OsCPK12'', is a ~~mumber~~ of CDPKs (calcium-dependent protein kinases), which oppositely modulates salt-stress tolerance and blast disease resistance<ref name="ref1"/>.	+	''OsCPK12'', is a member of CDPKs (calcium-dependent protein kinases), which oppositely modulates salt-stress tolerance and blast disease resistance<ref name="ref1"/>.

	==Annotated Information==		==Annotated Information==

@@ Line 63: / Line 63: @@
 *In rice, the CDPKs constitute a large family of 29 genes<ref name="ref6"/>.
-*To minimize and/or prevent oxidative damage to cells by ROS and to maintain cellular redox homeostasis, plants have evolved defense systems that include ROS scavenging enzymes, such as ascorbate peroxidase (APx), superoxide dismutase, catalase and glutathione peroxidase<ref name="ref9"/>.<ref name="ref10"/>.<ref name="ref11"/>.
+*To minimize and/or prevent oxidative damage to cells by ROS and to maintain cellular redox homeostasis, plants have evolved defense systems that include ROS scavenging enzymes, such as ascorbate peroxidase (APx), superoxide dismutase, catalase and glutathione peroxidase<ref name="ref9"/><ref name="ref10"/><ref name="ref11"/>.
 *Three major classes of Ca<sup>2+</sup>-binding proteins have been characterized in higher plants: calciumdependent protein kinases (CDPKs), calmodulins (CaMs) and CaM-like proteins, and calcineurin B-like proteins<ref name="ref6"/>.

@@ Line 89: / Line 89: @@
 </ref>
 * <ref name="ref6">
-Ray S, Agarwal P, Arora R, et al. Expression analysis of calcium-dependent protein kinase gene family during reproductive development and abiotic stress conditions in rice (Oryza sativa L. ssp. indica)[J]. Molecular Genetics and Genomics, 2007, 278(5): 493-505.文献3
+Ray S, Agarwal P, Arora R, et al. Expression analysis of calcium-dependent protein kinase gene family during reproductive development and abiotic stress conditions in rice (Oryza sativa L. ssp. indica)[J]. Molecular Genetics and Genomics, 2007, 278(5): 493-505.
 </ref>
 * <ref name="ref7">
-Asano T, Tanaka N, Yang G, et al. Genome-wide identification of the rice calcium-dependent protein kinase and its closely related kinase gene families: comprehensive analysis of the CDPKs gene family in rice[J]. Plant and cell physiology, 2005, 46(2): 356-366.文献6
+Asano T, Tanaka N, Yang G, et al. Genome-wide identification of the rice calcium-dependent protein kinase and its closely related kinase gene families: comprehensive analysis of the CDPKs gene family in rice[J]. Plant and cell physiology, 2005, 46(2): 356-366.
 </ref>
 * <ref name="ref8">
-Asano T, Hayashi N, Kikuchi S, et al. CDPK-mediated abiotic stress signaling[J]. Plant Signal Behav, 2012, 7(7): 817-821.文献5
+Asano T, Hayashi N, Kikuchi S, et al. CDPK-mediated abiotic stress signaling[J]. Plant Signal Behav, 2012, 7(7): 817-821.
 </ref>
 * <ref name="ref9">
@@ Line 106: / Line 106: @@
 Miller G A D, Suzuki N, CIFTCI‐YILMAZ S, et al. Reactive oxygen species homeostasis and signalling during drought and salinity stresses[J]. Plant, cell & environment, 2010, 33(4): 453-467.
 </ref>
 </references>
 ==Structured Information==

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+''OsCPK12'', is a mumber of CDPKs (calcium-dependent protein kinases), which oppositely modulates salt-stress tolerance and blast disease resistance<ref name="ref1"/>.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+[[File: OsCPK12-mediated pathogen.jpg|left|thumb|280px|'''Figure 1.'''''A model for OsCPK12-mediated pathogen and salt-stress signaling.(from reference <ref name="ref1"/>).'']]
 ===Expression===
-Please input expression information here.
+[[File: OsCPK12 Expression.jpg|left|thumb|300px|'''Figure 2.'''''Spatial pattern of GUS expression.(from reference <ref name="ref1"/>).'']]
 ===Evolution===
-Please input evolution information here.
+[[File: OsCPK21 Phylogenetic1.jpg|left|thumb|250px|'''Figure 3.'''''Phylogenetic relationships between CDPKs from rice and Arabidopsis.(from reference <ref name="ref5"/>).'']]
-You can also add sub-section(s) at will.
 ==Labs working on this gene==
-Please input related labs here.
+*National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==

← Older revision		Revision as of 19:57, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os04g0560600\|		GeneName = Os04g0560600\|

@@ Line 109: / Line 109: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]