Os04g0670900 - Revision history

Liman at 14:09, 21 December 2016

2016-12-21T14:09:06Z

Liman at 14:06, 21 December 2016

2016-12-21T14:06:13Z

Liman at 14:01, 21 December 2016

2016-12-21T14:01:56Z

Liman at 09:05, 10 December 2016

2016-12-10T09:05:55Z

192.168.72.52 at 08:09, 14 May 2015

2015-05-14T08:09:37Z

124.16.129.48 at 20:01, 22 July 2012

2012-07-22T20:01:38Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os04g0670900| Description = Homeodomain-like containing protein| Version = NM_001187208.1 GI:297723546 GeneID:9266435| Length = 2036 bp| Defini..."

2012-06-24T11:34:14Z

Created page with "{{JaponicaGene| GeneName = Os04g0670900| Description = Homeodomain-like containing protein| Version = NM_001187208.1 GI:297723546 GeneID:9266435| Length = 2036 bp| Defini..."

New page

{{JaponicaGene|
GeneName = Os04g0670900|
Description = Homeodomain-like containing protein|
Version = NM_001187208.1 GI:297723546 GeneID:9266435|
Length = 2036 bp|
Definition = Oryza sativa Japonica Group Os04g0670900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
AP = Chromosome 4:34629728..34631763|
CDS = 34629728..34630065,34630929..34631763|
GCID = <gbrowseImage1>
name=NC_008397:34629728..34631763
source=RiceChromosome04
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008397:34629728..34631763
source=RiceChromosome04
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgtcgggctcctctgccgacccctcgccatccgcctcgaccgcgggggcggcggtctcgccgctcgcgctgctccgcgcgcacggccacggccacgggcacctgactgctacgccgccgtcgggggcgacggggccggcgccgccgccgccgtcgccggcgtcggggtcggcgccgcgggactaccgcaaggggaactggacgctgcacgagacgctcatcctcatcaccgccaatcgtctggacgacgaccgccgcgccggcgttgggggcgcggcggctggtggcggcggcgccgggtcgccgccgacgccgaggtcggcggagcagcggtggaagtgggtggagaactactgctggaagaacggctgcctccgcagccagaaccagtgcaatgacaagtgggacaacctcctccgcgactacaagaaggtccgcgactacgagtcccgcgtcgccgccgccgccgccaccggcggcgcggccgccgccaactccgcccccctcccgtcgtactggacgatggagcggcacgagcgcaaggactgcaacctccccaccaacctggcgccggaggtctacgacgcgctctccgaggtgctctcccgccgcgcggcgcgacgcggcggcgccacgatcgcgcccaccccgccgccaccaccgctcgcgctgccgctgccgccgccgccgccgccctcgccgccgaagcctctcgtcgcgcagcagcagcaccaccatcacggccatcaccaccacccacctcctcctcagccgccgccgtcgtcgctgcagctccctccggcggtcgtggctccgccgccggcgtccgtttccgcggaggaggagatgtcggggtcgtcggagtcgggggaggaggaggaggggtcgggcggggagccggaggcgaagcggcggcggctgagccggctggggtcgagcgtggtgaggagcgcgacggtggtggcgaggacgctggtggcgtgcgaggagaagcgggagcgccggcaccgggagctgctgcagctggaggagcggcggctgcgcctcgaggaggagcgcaccgaggtccgccgccagggcttcgccggcctcatcgccgccgtcaacagcctctcctccgccatccacgccctcgtctccgaccaccgcagcggcgactcctccggccgatga</cdnaseq>|
AA = <aaseq>MSGSSADPSPSASTAGAAVSPLALLRAHGHGHGHLTATPPSGAT GPAPPPPSPASGSAPRDYRKGNWTLHETLILITANRLDDDRRAGVGGAAAGGGGAGSP PTPRSAEQRWKWVENYCWKNGCLRSQNQCNDKWDNLLRDYKKVRDYESRVAAAAATGG AAAANSAPLPSYWTMERHERKDCNLPTNLAPEVYDALSEVLSRRAARRGGATIAPTPP PPPLALPLPPPPPPSPPKPLVAQQQHHHHGHHHHPPPPQPPPSSLQLPPAVVAPPPAS VSAEEEMSGSSESGEEEEGSGGEPEAKRRRLSRLGSSVVRSATVVARTLVACEEKRER RHRELLQLEERRLRLEEERTEVRRQGFAGLIAAVNSLSSAIHALVSDHRSGDSSGR</aaseq>|
DNA = <dnaseqindica>1699..2036#1..835#atgtcgggctcctctgccgacccctcgccatccgcctcgaccgcgggggcggcggtctcgccgctcgcgctgctccgcgcgcacggccacggccacgggcacctgactgctacgccgccgtcgggggcgacggggccggcgccgccgccgccgtcgccggcgtcggggtcggcgccgcgggactaccgcaaggggaactggacgctgcacgagacgctcatcctcatcaccgccaatcgtctggacgacgaccgccgcgccggcgttgggggcgcggcggctggtggcggcggcgccgggtcgccgccgacgccgaggtcggcggagcagcggtggaagtgggtggagaactactgctggaagaacggctgcctccgcagccagaaccagtgcaatgacaagtgggacaacctcctccgcgactacaagaaggtccgcgactacgagtcccgcgtcgccgccgccgccgccaccggcggcgcggccgccgccaactccgcccccctcccgtcgtactggacgatggagcggcacgagcgcaaggactgcaacctccccaccaacctggcgccggaggtctacgacgcgctctccgaggtgctctcccgccgcgcggcgcgacgcggcggcgccacgatcgcgcccaccccgccgccaccaccgctcgcgctgccgctgccgccgccgccgccgccctcgccgccgaagcctctcgtcgcgcagcagcagcaccaccatcacggccatcaccaccacccacctcctcctcagccgccgccgtcgtcgctgcagctccctccggcggtcgtggctccgccgccggcgtccgtttccggtaatggtcggtgcgcgcaccgtacacttaatactcatagtagctgttacatcccctcccctccaaaccatttactactgttctctcacactgatatgtgggcccacctcgcagcgagctgagctccgccactatacgttattaaaagcccgcgttatgattgggctagttacgttgttgagttgagctggtcgtaattatttactaccgctacattttttttacctttttaccgtggggttcgggagagggtggtcgcggtaataataatgtcctcaactcaggggttgggagaataaagctgcgtgcagtgtggtgcagttcatgcatgggaaaggtgatgcgaatccggatattttatgggggtttaattgaaagatttactccacgacgatactaccctctactcctgccatgctgcaagcatgcgtaatgcgttacattgcgaaatcactcgctttgaatgaaaaaaaagcctgaaactttggagaaaaaaaaagcaccttttgttttctcctcgtgcatgcatgccgcgctgcgtatcttgaactactttggacttttgtatcgatcaacaaaactatacctatattagcagtaattaatactacatttgtagatatcctttgaccgttctatcttatttttgataattaaaaaaattagttacatttaaaaatgctatttatattttattatctaataacaataagtgtattagttaaatattaaacgttggatatgaatagtttaaaacgttggatatgaatagtttaaaactgtattgttttggggcggagtgagtaattgattgatcgattaattaagtggttgactaatgtgtgtgtgatttatttgtgtagcggaggaggagatgtcggggtcgtcggagtcgggggaggaggaggaggggtcgggcggggagccggaggcgaagcggcggcggctgagccggctggggtcgagcgtggtgaggagcgcgacggtggtggcgaggacgctggtggcgtgcgaggagaagcgggagcgccggcaccgggagctgctgcagctggaggagcggcggctgcgcctcgaggaggagcgcaccgaggtccgccgccagggcttcgccggcctcatcgccgccgtcaacagcctctcctccgccatccacgccctcgtctccgaccaccgcagcggcgactcctccggccgatga</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001187208.1 RefSeq:Os04g0670900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 4]]
[[Category:Chromosome 4]]

@@ Line 6: / Line 6: @@
 ===Function===
 * Examination of the sh4 protein, using programs Prosite and PredictNLS, identified a Myb3 DNA binding domain and a nuclear localization signal, suggesting that sh4 is a transcription factor.
-===Mutation===
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+* '''''sh4''''' plays an important role in the establishment of the abscission layer from the early stage of flower development.
 ===Expression ===
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+* Reverse transcription–polymerase chain reaction (RT-PCR) detected the expression of sh4 at the flower and pedicel junction, where mature grains separate from the mother plant. Gene expression was not detected in the remaining parts of flowers or pedicels or in the leaves.
 ===Sublocalization===
 * The researchers fused the gene for a green fluorescent protein (GFP) with sh4 to make sh4-GFP, which was driven by a Ubi promoter in the plasmid construct. The construct was introduced into a japonica cultivar, Taipei 309, a rice strain tested as suitable for gene transformation. The nuclear localization of GFP-tagged sh4 was determined.

@@ Line 7: / Line 7: @@
 ===Function===
 [[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+* Examination of the sh4 protein, using programs Prosite and PredictNLS, identified a Myb3 DNA binding domain and a nuclear localization signal, suggesting that sh4 is a transcription factor.
 ===Mutation===
 [[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
@@ Line 13: / Line 13: @@
 ===Expression ===
 [[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+===Sublocalization===
 ===Evolution===

@@ Line 1: / Line 1: @@
-The rice gene  was reported as '''''''''' in 20<ref name="ref1" /> by researchers from China and Japan.
+The rice gene Os04g0670900 was reported as '''''Sh4''''' in 2006<ref name="ref1" /> by researchers from USA.
 ==Annotated Information==
 ===Gene Symbol===
-*''''' <=>
+*'''''Os04g0670900 <=> sh4, SH4, SHAT2, SHA1, qSH4, OsSh4, Sh4, Osh4
 ===Function===
@@ Line 19: / Line 19: @@
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
+* Department of Plant Biology, Michigan State University, East Lansing, MI 48824, USA.
 ==References==
 <references>
 * <ref name="ref1">
+Li C, Zhou A, Sang T. Rice domestication by reducing shattering[J]. science, 2006, 311(5769): 1936-1939.
 </ref>
 </references>

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice gene  was reported as '''''''''' in 20<ref name="ref1" /> by researchers from China and Japan.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
 ===Evolution===
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]

← Older revision		Revision as of 08:09, 14 May 2015
Line 20:		Line 20:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]
−	~~GeneName = Os04g0670900\|~~
−	~~Description = Homeodomain-like containing protein\|~~
−	~~Version = NM_001187208.1 GI:297723546 GeneID:9266435\|~~
−	~~Length = 2036 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os04g0670900, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 4\|Chromosome 4]]\|~~
−	~~AP = Chromosome 4:34629728..34631763\|~~
−	~~CDS = 34629728..34630065,34630929..34631763\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008397:34629728..34631763~~
−	~~source=RiceChromosome04~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008397:34629728..34631763~~
−	~~source=RiceChromosome04~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atgtcgggctcctctgccgacccctcgccatccgcctcgaccgcgggggcggcggtctcgccgctcgcgctgctccgcgcgcacggccacggccacgggcacctgactgctacgccgccgtcgggggcgacggggccggcgccgccgccgccgtcgccggcgtcggggtcggcgccgcgggactaccgcaaggggaactggacgctgcacgagacgctcatcctcatcaccgccaatcgtctggacgacgaccgccgcgccggcgttgggggcgcggcggctggtggcggcggcgccgggtcgccgccgacgccgaggtcggcggagcagcggtggaagtgggtggagaactactgctggaagaacggctgcctccgcagccagaaccagtgcaatgacaagtgggacaacctcctccgcgactacaagaaggtccgcgactacgagtcccgcgtcgccgccgccgccgccaccggcggcgcggccgccgccaactccgcccccctcccgtcgtactggacgatggagcggcacgagcgcaaggactgcaacctccccaccaacctggcgccggaggtctacgacgcgctctccgaggtgctctcccgccgcgcggcgcgacgcggcggcgccacgatcgcgcccaccccgccgccaccaccgctcgcgctgccgctgccgccgccgccgccgccctcgccgccgaagcctctcgtcgcgcagcagcagcaccaccatcacggccatcaccaccacccacctcctcctcagccgccgccgtcgtcgctgcagctccctccggcggtcgtggctccgccgccggcgtccgtttccgcggaggaggagatgtcggggtcgtcggagtcgggggaggaggaggaggggtcgggcggggagccggaggcgaagcggcggcggctgagccggctggggtcgagcgtggtgaggagcgcgacggtggtggcgaggacgctggtggcgtgcgaggagaagcgggagcgccggcaccgggagctgctgcagctggaggagcggcggctgcgcctcgaggaggagcgcaccgaggtccgccgccagggcttcgccggcctcatcgccgccgtcaacagcctctcctccgccatccacgccctcgtctccgaccaccgcagcggcgactcctccggccgatga</cdnaseq>\|
−	AA = <aaseq>MSGSSADPSPSASTAGAAVSPLALLRAHGHGHGHLTATPPSGAT GPAPPPPSPASGSAPRDYRKGNWTLHETLILITANRLDDDRRAGVGGAAAGGGGAGSP PTPRSAEQRWKWVENYCWKNGCLRSQNQCNDKWDNLLRDYKKVRDYESRVAAAAATGG AAAANSAPLPSYWTMERHERKDCNLPTNLAPEVYDALSEVLSRRAARRGGATIAPTPP PPPLALPLPPPPPPSPPKPLVAQQQHHHHGHHHHPPPPQPPPSSLQLPPAVVAPPPAS VSAEEEMSGSSESGEEEEGSGGEPEAKRRRLSRLGSSVVRSATVVARTLVACEEKRER RHRELLQLEERRLRLEEERTEVRRQGFAGLIAAVNSLSSAIHALVSDHRSGDSSGR</aaseq>\|
−	DNA = <dnaseqindica>1699..2036#1..835#atgtcgggctcctctgccgacccctcgccatccgcctcgaccgcgggggcggcggtctcgccgctcgcgctgctccgcgcgcacggccacggccacgggcacctgactgctacgccgccgtcgggggcgacggggccggcgccgccgccgccgtcgccggcgtcggggtcggcgccgcgggactaccgcaaggggaactggacgctgcacgagacgctcatcctcatcaccgccaatcgtctggacgacgaccgccgcgccggcgttgggggcgcggcggctggtggcggcggcgccgggtcgccgccgacgccgaggtcggcggagcagcggtggaagtgggtggagaactactgctggaagaacggctgcctccgcagccagaaccagtgcaatgacaagtgggacaacctcctccgcgactacaagaaggtccgcgactacgagtcccgcgtcgccgccgccgccgccaccggcggcgcggccgccgccaactccgcccccctcccgtcgtactggacgatggagcggcacgagcgcaaggactgcaacctccccaccaacctggcgccggaggtctacgacgcgctctccgaggtgctctcccgccgcgcggcgcgacgcggcggcgccacgatcgcgcccaccccgccgccaccaccgctcgcgctgccgctgccgccgccgccgccgccctcgccgccgaagcctctcgtcgcgcagcagcagcaccaccatcacggccatcaccaccacccacctcctcctcagccgccgccgtcgtcgctgcagctccctccggcggtcgtggctccgccgccggcgtccgtttccggtaatggtcggtgcgcgcaccgtacacttaatactcatagtagctgttacatcccctcccctccaaaccatttactactgttctctcacactgatatgtgggcccacctcgcagcgagctgagctccgccactatacgttattaaaagcccgcgttatgattgggctagttacgttgttgagttgagctggtcgtaattatttactaccgctacattttttttacctttttaccgtggggttcgggagagggtggtcgcggtaataataatgtcctcaactcaggggttgggagaataaagctgcgtgcagtgtggtgcagttcatgcatgggaaaggtgatgcgaatccggatattttatgggggtttaattgaaagatttactccacgacgatactaccctctactcctgccatgctgcaagcatgcgtaatgcgttacattgcgaaatcactcgctttgaatgaaaaaaaagcctgaaactttggagaaaaaaaaagcaccttttgttttctcctcgtgcatgcatgccgcgctgcgtatcttgaactactttggacttttgtatcgatcaacaaaactatacctatattagcagtaattaatactacatttgtagatatcctttgaccgttctatcttatttttgataattaaaaaaattagttacatttaaaaatgctatttatattttattatctaataacaataagtgtattagttaaatattaaacgttggatatgaatagtttaaaacgttggatatgaatagtttaaaactgtattgttttggggcggagtgagtaattgattgatcgattaattaagtggttgactaatgtgtgtgtgatttatttgtgtagcggaggaggagatgtcggggtcgtcggagtcgggggaggaggaggaggggtcgggcggggagccggaggcgaagcggcggcggctgagccggctggggtcgagcgtggtgaggagcgcgacggtggtggcgaggacgctggtggcgtgcgaggagaagcgggagcgccggcaccgggagctgctgcagctggaggagcggcggctgcgcctcgaggaggagcgcaccgaggtccgccgccagggcttcgccggcctcatcgccgccgtcaacagcctctcctccgccatccacgccctcgtctccgaccaccgcagcggcgactcctccggccgatga</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001187208.1 RefSeq:Os04g0670900]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 4]]~~
−	~~[[Category:~~Chromosome 4]]

← Older revision		Revision as of 20:01, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os04g0670900\|		GeneName = Os04g0670900\|