Os05g0107700 - Revision history

Xysj2027: /* References */

2017-05-06T15:18:35Z

‎References

Xysj2027: /* Expression */

2017-05-06T15:12:31Z

‎Expression

Xysj2027 at 15:12, 6 May 2017

2017-05-06T15:12:16Z

Xysj2027 at 15:11, 6 May 2017

2017-05-06T15:11:51Z

192.168.72.52: /* Structured Information */

2015-06-12T07:26:35Z

‎Structured Information

Chengqi at 12:24, 4 June 2014

2014-06-04T12:24:01Z

Chengqi at 11:24, 4 June 2014

2014-06-04T11:24:49Z

Zhangzhang at 08:58, 1 June 2014

2014-06-01T08:58:21Z

Zhangzhang: Reverted edits by Duweili13 (talk) to last revision by Pxaricewiki2013

2014-05-30T11:25:09Z

Reverted edits by Duweili13 (talk) to last revision by Pxaricewiki2013

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Duweili13 at 10:11, 29 May 2014

2014-05-29T10:11:31Z

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 ==References==
-(1)A. S. Iyer-Pascuzzi;H. Jiang;L. Huang;and S. R. McCouch. Genetic and Functional Characterization of the Rice Bacterial Blight Disease Resistance Gene xa5. Phytopathology, 2008, 98(3): 289-295
+* (1)A. S. Iyer-Pascuzzi;H. Jiang;L. Huang;and S. R. McCouch. Genetic and Functional Characterization of the Rice Bacterial Blight Disease Resistance Gene xa5. Phytopathology, 2008, 98(3): 289-295
-(2)Anjali S. Iyer;and Susan R. McCouch. The Rice Bacterial Blight Resistance Gene xa5 Encodes a Novel Form of Disease Resistance. Molecular Plant-Microbe Interactions, 2004, 17(12): 1348-1354
+* (2)Anjali S. Iyer;and Susan R. McCouch. The Rice Bacterial Blight Resistance Gene xa5 Encodes a Novel Form of Disease Resistance. Molecular Plant-Microbe Interactions, 2004, 17(12): 1348-1354
-(3)Matthew W. Blair;Amanda J. Garris;Anjali S. Iyer;Brad Chapman;Stephen Kresovich;Susan R. McCouch. High resolution genetic mapping and candidate gene identification at the xa5 locus for bacterial blight resistance in rice (Oryza sativa L.). Theoretical and Applied Genetics, 2003, 107(1): 62-73
+* (3)Matthew W. Blair;Amanda J. Garris;Anjali S. Iyer;Brad Chapman;Stephen Kresovich;Susan R. McCouch. High resolution genetic mapping and candidate gene identification at the xa5 locus for bacterial blight resistance in rice (Oryza sativa L.). Theoretical and Applied Genetics, 2003, 107(1): 62-73
-(4)Marella Lalitha Shanti; M. L. C. George; C. M. Vera Cruz; M. A. Bernardo; R. J. Nelson; H. Leung; J. N. Reddy and R. Sridhar.  Identification of Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India. Phytopathology, 2001, 85(5): 506-512
+* (4)Marella Lalitha Shanti; M. L. C. George; C. M. Vera Cruz; M. A. Bernardo; R. J. Nelson; H. Leung; J. N. Reddy and R. Sridhar.  Identification of Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India. Phytopathology, 2001, 85(5): 506-512
-(5)D. Yang;A. Sanchez;G. S. Khush;Y. Zhu and N. Huang. Construction of a BAC contig containing the xa5 locus in rice. Theoretical and Applied Genetics, 1998, 97(7): 1120-1124
+* (5)D. Yang;A. Sanchez;G. S. Khush;Y. Zhu and N. Huang. Construction of a BAC contig containing the xa5 locus in rice. Theoretical and Applied Genetics, 1998, 97(7): 1120-1124
-(6)M. W. Blair and S. R. McCouch. Microsatellite and sequence-tagged site markers diagnostic for the rice bacterial leaf blight resistance gene xa-5. Theoretical and Applied Genetics, 1997, 95(1-2): 174-184
+* (6)M. W. Blair and S. R. McCouch. Microsatellite and sequence-tagged site markers diagnostic for the rice bacterial leaf blight resistance gene xa-5. Theoretical and Applied Genetics, 1997, 95(1-2): 174-184
-(7)V. Petpisit;Gurdev S. Khush and H. E. Kauffman. Inheritance of Resistance to Bacterial Blight in Rice. Crop Science, 1977, 17(4): 551-554
+* (7)V. Petpisit;Gurdev S. Khush and H. E. Kauffman. Inheritance of Resistance to Bacterial Blight in Rice. Crop Science, 1977, 17(4): 551-554
-(8)Identification and gene prediction of a 24 kbregion containing xa5,a recessive bacterial blight resistance gene in rice(Oryza sativa L.)[J]. Chinese Science Bulletin,2003,24:2725-2729.
+* (8)Identification and gene prediction of a 24 kbregion containing xa5,a recessive bacterial blight resistance gene in rice(Oryza sativa L.)[J]. Chinese Science Bulletin,2003,24:2725-2729.
-(9)Comparative physical mapping of rice BAC clones linked to resistance genes Glh,Bph-3 and xa-5 in Oryza sativa L. and O. granulata Nees et Arn.ex Watt.[J]. Chinese Science Bulletin,2004,06:591-596.
+* (9)Comparative physical mapping of rice BAC clones linked to resistance genes Glh,Bph-3 and xa-5 in Oryza sativa L. and O. granulata Nees et Arn.ex Watt.[J]. Chinese Science Bulletin,2004,06:591-596.
-(10)Virulence of Xanthomonas oryzae pv. oryzae on Rice Near-Isogenic Lines with Single Resistance Gene and Pyramiding Lines in China[J]. Agricultural Sciences in China,2004,10:45-50.
+* (10)Virulence of Xanthomonas oryzae pv. oryzae on Rice Near-Isogenic Lines with Single Resistance Gene and Pyramiding Lines in China[J]. Agricultural Sciences in China,2004,10:45-50.
-(11)Application of Functional Markers to Identify Genes for Bacterial Blight Resistance in Oryza rufipogon[J]. Rice Science,2010,01:73-76.
+* (11)Application of Functional Markers to Identify Genes for Bacterial Blight Resistance in Oryza rufipogon[J]. Rice Science,2010,01:73-76.
-(12)Identification of an avirulence gene,avrxa5,from the rice pathogen Xanthomonas oryzae pv.oryzae[J]. Science China(Life Sciences),2010,12:1440-1449.
+* (12)Identification of an avirulence gene,avrxa5,from the rice pathogen Xanthomonas oryzae pv.oryzae[J]. Science China(Life Sciences),2010,12:1440-1449.
-(13)Evaluation of the Pathotypes of Xanthomonas oryzae pv. oryzae and Preliminary Analysis of the Resistant Reactions of Main Japonica Rice in the Yunnan Plateau, China[J]. Agricultural Sciences in China,2006,04:299-306.
+* (13)Evaluation of the Pathotypes of Xanthomonas oryzae pv. oryzae and Preliminary Analysis of the Resistant Reactions of Main Japonica Rice in the Yunnan Plateau, China[J]. Agricultural Sciences in China,2006,04:299-306.
 ==Structured Information==

@@ Line 10: / Line 10: @@
 * ''xa5'' is inherited in a completely recessive manner and the susceptible allele ''Xa5'' is fully dominant.
 * ''xa5''-mediated recessive resistance is the result of restricted bacterial movement, but not restricted multiplication.
 ===Evolution===

← Older revision		Revision as of 15:12, 6 May 2017
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−	The rice '''''Os05g0107700''''' was reported as '''''2003''''' in 2003 ~~<ref name="ref1" />~~ by researchers from USA.	+	The rice '''''Os05g0107700''''' was reported as '''''2003''''' in 2003 by researchers from USA.

	==Annotated Information==		==Annotated Information==

@@ Line 1: / Line 1: @@
-''Os05g0107700'', named as ''xa5'', is a recessive gene associated with resistance to rice bacterial leaf blight.
+The rice '''''Os05g0107700''''' was reported as '''''2003''''' in 2003 <ref name="ref1" /> by researchers from USA.
 ==Annotated Information==
 ===Function===
-The gene ''xa5'' provides racespecific resistance to ''X. oryzae'' pv. ''oryzae'', and encodes the small subunit of transcription factor ''IIA(TFIIAγ)''. This recessive gene provides race-specific resistance to ''X. oryzae'' pv. ''oryzae'', and is structurally unlike the more than 40 plant R genes previously cloned. ''xa5'' is inherited in a completely recessive manner and the susceptible allele ''Xa5'' is fully dominant. ''xa5''-mediated recessive resistance is the result of restricted bacterial movement, but not restricted multiplication.
+* The gene ''xa5'' provides racespecific resistance to ''X. oryzae'' pv. ''oryzae'', and encodes the small subunit of transcription factor ''IIA(TFIIAγ)''.
+* This recessive gene provides race-specific resistance to ''X. oryzae'' pv. ''oryzae'', and is structurally unlike the more than 40 plant R genes previously cloned.
-Plants with lesions less than 4 cm are resistant, while those greater than 4 cm are susceptible. The susceptible ''indica'' isoline IR24 and the resistant ''indica'' isoline IRBB5 were referred to as IS and IR respectively. No significant difference in lesion length between IS and heterozygous F2s 14 dpi was observed. In addition, bacterial populations over time in heterozygous plants were similar to those in homozygous susceptible IS individuals. These results demonstrate that the ''Xa5'' allele is not dose-dependent in the ''indica'' IR24 background.
+* ''xa5'' is inherited in a completely recessive manner and the susceptible allele ''Xa5'' is fully dominant.
+* ''xa5''-mediated recessive resistance is the result of restricted bacterial movement, but not restricted multiplication.
 ===Expression===
@@ Line 35: / Line 24: @@
 ===Evolution===
-''xa5'' is a recessive, race-specific ''R'' gene that provides immunity to races of ''Xanthomonas oryzae'' pv. ''oryzae'' expressing ''avrxa5'', the cognate avirulence gene to ''xa5''. ''X. oryzae'' pv. ''oryzae'' causes rice bacterial blight, a severe disease in South and Southeast Asia. ''Avrxa5'' is likely to be a member of the ''AvrBs3'' family of proteins (Bai et al., 2000; Hopkins et al., 1992), which are usually characterized by nuclear localization signals and transcriptional activation domains (Bonas and Lahaye, 2002).
+* ''xa5'' is a recessive, race-specific ''R'' gene that provides immunity to races of ''Xanthomonas oryzae'' pv. ''oryzae'' expressing ''avrxa5'', the cognate avirulence gene to ''xa5''. ''X. oryzae'' pv. ''oryzae'' causes rice bacterial blight, a severe disease in South and Southeast Asia. ''Avrxa5'' is likely to be a member of the ''AvrBs3'' family of proteins (Bai et al., 2000; Hopkins et al., 1992), which are usually characterized by nuclear localization signals and transcriptional activation domains (Bonas and Lahaye, 2002).
-''xa5'' is a naturally occurring mutation that is most commonly found in the Aus-Boro group of rice (''Oryzae sativa L.'') varieties from the Bangladeshi region of Asia (Garris et al., 2003).There are over 20 resistance genes to ''X. oryzae'' pv. ''oryzae'', three of which have been cloned (''Xa21,Xa1,'' and ''Xa26'') and fall into one of the five typical ''R'' gene classes (Song et al., 1995; Sun et al., 2004; Yoshimura et al., 1998). ''Xa21'' and ''Xa26'' both encode NBS-LRR proteins containing a kinase domain, while ''Xa1'' encodes a member of the NBS-LRR class.
+* ''xa5'' is a naturally occurring mutation that is most commonly found in the Aus-Boro group of rice (''Oryzae sativa L.'') varieties from the Bangladeshi region of Asia (Garris et al., 2003).There are over 20 resistance genes to ''X. oryzae'' pv. ''oryzae'', three of which have been cloned (''Xa21,Xa1,'' and ''Xa26'') and fall into one of the five typical ''R'' gene classes (Song et al., 1995; Sun et al., 2004; Yoshimura et al., 1998). ''Xa21'' and ''Xa26'' both encode NBS-LRR proteins containing a kinase domain, while ''Xa1'' encodes a member of the NBS-LRR class.
-''xa5'' does not resemble either of the two cloned recessive resistance genes in plants, ''mlo'' or ''RRS1-R''. In contrast to ''xa5'', resistance governed by barley mlois not race-specific (Buschges et al., 1997). Mutations in ''Mlo'' result in immunity to nearly all isolates of the fungal pathogen ''Erysiphe graminis'' f. sp. hordei. The ''RRS1-R'' gene from ''Arabidopsis'' provides resistance to several strains of ''Ralstonia solanacearum'' and encodes an NBSLRR protein with a WRKY motif characteristic of some plant transcription factors (Deslandes et al., 2002). The ''RRS1-R'' gene product physically interacts with its cognate protein PopP2 (Deslandes et al., 2003). Unlike ''xa5'', ''RRS1-R'' shares many characteristics with dominant ''R'' genes (Deslandes et al., 2003). For example, while genetically defined as recessive, ''RRS1-R'' behaves as a dominant gene in transgenic plants and is a member of the NBS-LRR ''R'' gene class.
+* ''xa5'' does not resemble either of the two cloned recessive resistance genes in plants, ''mlo'' or ''RRS1-R''. In contrast to ''xa5'', resistance governed by barley mlois not race-specific (Buschges et al., 1997). Mutations in ''Mlo'' result in immunity to nearly all isolates of the fungal pathogen ''Erysiphe graminis'' f. sp. hordei. The ''RRS1-R'' gene from ''Arabidopsis'' provides resistance to several strains of ''Ralstonia solanacearum'' and encodes an NBSLRR protein with a WRKY motif characteristic of some plant transcription factors (Deslandes et al., 2002). The ''RRS1-R'' gene product physically interacts with its cognate protein PopP2 (Deslandes et al., 2003). Unlike ''xa5'', ''RRS1-R'' shares many characteristics with dominant ''R'' genes (Deslandes et al., 2003). For example, while genetically defined as recessive, ''RRS1-R'' behaves as a dominant gene in transgenic plants and is a member of the NBS-LRR ''R'' gene class.
 ==Labs working on this gene==
-Plant Genome Mapping Laboratory, University of Georgia,Riverbend Research Laboratory, Room 162, Athens,GA 30602, USA
+* Plant Genome Mapping Laboratory, University of Georgia,Riverbend Research Laboratory, Room 162, Athens,GA 30602, USA
-Institute of Genomic Diversity, Plant Breeding Department,130 Biotechnology Building, Cornell University, USA
+* Institute of Genomic Diversity, Plant Breeding Department,130 Biotechnology Building, Cornell University, USA
-CIAT - International Center for Tropical Agriculture,A. A. 6713, Cali, Colombia, South America
+* CIAT - International Center for Tropical Agriculture,A. A. 6713, Cali, Colombia, South America
-Central Rice Research Institute (CRRI), Cuttack 753 006, India
+* Central Rice Research Institute (CRRI), Cuttack 753 006, India
-International Rice Research Institute (IRRI), Los Banos, Philippines
+* International Rice Research Institute (IRRI), Los Banos, Philippines
-College of Life Sciences, Wuhan University,Wuhan, 430072, P.R. China
+* College of Life Sciences, Wuhan University,Wuhan, 430072, P.R. China
-Department of Plant Breeding and Genetics, 240 Emerson Hall, Cornell University, Ithaca NY 14853, USA
+* Department of Plant Breeding and Genetics, 240 Emerson Hall, Cornell University, Ithaca NY 14853, USA
 ==References==

@@ Line 84: / Line 84: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]

← Older revision		Revision as of 12:24, 4 June 2014
Line 70:		Line 70:

	(7)V. Petpisit;Gurdev S. Khush and H. E. Kauffman. Inheritance of Resistance to Bacterial Blight in Rice. Crop Science, 1977, 17(4): 551-554		(7)V. Petpisit;Gurdev S. Khush and H. E. Kauffman. Inheritance of Resistance to Bacterial Blight in Rice. Crop Science, 1977, 17(4): 551-554
		+
		+	(8)Identification and gene prediction of a 24 kbregion containing xa5,a recessive bacterial blight resistance gene in rice(Oryza sativa L.)[J]. Chinese Science Bulletin,2003,24:2725-2729.
		+
		+	(9)Comparative physical mapping of rice BAC clones linked to resistance genes Glh,Bph-3 and xa-5 in Oryza sativa L. and O. granulata Nees et Arn.ex Watt.[J]. Chinese Science Bulletin,2004,06:591-596.
		+
		+	(10)Virulence of Xanthomonas oryzae pv. oryzae on Rice Near-Isogenic Lines with Single Resistance Gene and Pyramiding Lines in China[J]. Agricultural Sciences in China,2004,10:45-50.
		+
		+	(11)Application of Functional Markers to Identify Genes for Bacterial Blight Resistance in Oryza rufipogon[J]. Rice Science,2010,01:73-76.
		+
		+	(12)Identification of an avirulence gene,avrxa5,from the rice pathogen Xanthomonas oryzae pv.oryzae[J]. Science China(Life Sciences),2010,12:1440-1449.
		+
		+	(13)Evaluation of the Pathotypes of Xanthomonas oryzae pv. oryzae and Preliminary Analysis of the Resistant Reactions of Main Japonica Rice in the Yunnan Plateau, China[J]. Agricultural Sciences in China,2006,04:299-306.

	==Structured Information==		==Structured Information==