Os05g0148600 - Revision history

192.168.72.52: /* Structured Information */

2015-06-12T07:29:56Z

‎Structured Information

Zhangye: /* Evolution */

2015-01-10T06:59:51Z

‎Evolution

Zhangye at 06:55, 10 January 2015

2015-01-10T06:55:33Z

124.16.129.48 at 20:04, 22 July 2012

2012-07-22T20:04:24Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os05g0148600| Description = Similar to Na+/H+ antiporter| Version = NM_001061185.1 GI:115462100 GeneID:4337811| Length = 6157 bp| Definition = ..."

2012-06-24T10:07:00Z

Created page with "{{JaponicaGene| GeneName = Os05g0148600| Description = Similar to Na+/H+ antiporter| Version = NM_001061185.1 GI:115462100 GeneID:4337811| Length = 6157 bp| Definition = ..."

New page

{{JaponicaGene|
GeneName = Os05g0148600|
Description = Similar to Na+/H+ antiporter|
Version = NM_001061185.1 GI:115462100 GeneID:4337811|
Length = 6157 bp|
Definition = Oryza sativa Japonica Group Os05g0148600, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
AP = Chromosome 5:2755436..2761592|
CDS = 2755718..2756056,2756437..2756520,2756628..2756690,2756793..2756931,2757561..2757662<br>,2757767..2757867,2758358..2758424,2758517..2758563,2758689..2758883<br>,2758966..2759012,2759140..2759199,2759685..2759782,2760662..2760780<br>,2760881..2761054|
GCID = <gbrowseImage1>
name=NC_008398:2755436..2761592
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008398:2755436..2761592
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggggctggatttgggagctctcgttctcaaatccggcgggctgttggtgtcggactacgactcgatcgtcgcgatcaacatcttcgtggcgctgctgtgcagctgcattgtgatcgggcacctgctggaagggaaccggtgggtcaatgaatccatcaccgcgcttgtcatggggctgatcactggaggtgtgattctgctcgtcagtggtgggaagaactcgcacattcttgtgttcagtgaggacctcttcttcatttatttgcttccaccgatcatctttaatgctgggtttcaagtaaagaaaaaacaattcttccgcaattttatgacaattattttatttggtgctgtggggacattgatatcctttgtgataatctctctaggtgccatgacattgttcaaaaaacttgatgttggtccactccagcttggggactatcttgcaattggggctatcttctcagcaacagattctgtttgcaccttacaggtgcttaaccaagacgaaacacccctactctatagtctggtttttggtgaaggggttgtcaatgatgctacatctgttgtgctctttaatgcaattgaagacattgatattgctaattttgatagccttgttctactagcgttcataggaaattttctctacctattcttcaccagtacccttcttggagtagttgctgggttgcttagtgcctatattattaagaaactatgttttgccagacactcaactgacagagaagttgctatcatgatactcatggcgtacctttcatatatgctgtcgatgctgctagatctgagtggcattctcactgtgttcttctctggaatagtaatgtcacattacacttggcataatgtgacagaaagctctaggattactaccaagcacacttttgctactttatctttcattgctgaaatttttctatttctctatgttgggatggatgcactggacattgaaaaatggaaattagctagcagcagtcctaaaaaaccaattgctttaagtgcaactatattgggcttggttatggttggaagagcagcatttgtattccctttgtctttcttatccaatctaagtaaaaaagagacacgcccaaagatctccttcaagcagcaagtaatcatatggtgggcaggtctcatgagaggagcagtatcaatagcacttgcctatcacaagttcaccgcatctggtcatactgaattgcgaatcaatgctatcatgatcaccagcacagtcattgttgttctgttcagcacaatggtttttggtttttttaccaagcctctcctcaatctcctcatcccaccaaggcctgacatagcagctgatctctcaagccagtcaatcatagacccacttcttggaagcctgctggggtctgacttcgatgtaggccagccctcccctcagaacaaccttcagcttcttctcaccattcagactcgctccgttcatcgcgtgtggcgcaagtttgatgatagattcatgcgcccgatgttcgggggccgaggcttcgttcctttcgtgcctggttcgccagtggagcggagcatccatggatctcaactgggcactgtgactgaggctgaacatagctga</cdnaseq>|
AA = <aaseq>MGLDLGALVLKSGGLLVSDYDSIVAINIFVALLCSCIVIGHLLE GNRWVNESITALVMGLITGGVILLVSGGKNSHILVFSEDLFFIYLLPPIIFNAGFQVK KKQFFRNFMTIILFGAVGTLISFVIISLGAMTLFKKLDVGPLQLGDYLAIGAIFSATD SVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIEDIDIANFDSLVLLAFIGNF LYLFFTSTLLGVVAGLLSAYIIKKLCFARHSTDREVAIMILMAYLSYMLSMLLDLSGI LTVFFSGIVMSHYTWHNVTESSRITTKHTFATLSFIAEIFLFLYVGMDALDIEKWKLA SSSPKKPIALSATILGLVMVGRAAFVFPLSFLSNLSKKETRPKISFKQQVIIWWAGLM RGAVSIALAYHKFTASGHTELRINAIMITSTVIVVLFSTMVFGFFTKPLLNLLIPPRP DIAADLSSQSIIDPLLGSLLGSDFDVGQPSPQNNLQLLLTIQTRSVHRVWRKFDDRFM RPMFGGRGFVPFVPGSPVERSIHGSQLGTVTEAEHS</aaseq>|
DNA = <dnaseqindica>5537..5875#5073..5156#4903..4965#4662..4800#3931..4032#3726..3826#3169..3235#3030..3076#2710..2904#2581..2627#2394..2453#1811..1908#813..931#539..712#atggccagatggacacgaccaccagtccaccacctcctcctctacttcttcttctcacgtctctctctctgaatccagatttttttttgttggttccatcctctctcctgcttcagatcagggtggccatctcgcttgaatctgcaggtgcgtgcggaatttcgatttttgtttttacttttattttgtgcacatccttttcttgagaggagaggtggcggcatggtggcttcttgggtcggatttggatttggagtcggaattgaggaattcagtgagaatatgtagctcggatcatctttcatcctactggtcactggtttgttgatttgggttgtggaatgattaagccgggagtgatttgctgttgctttgcggtttctctgaatttgttgacggctacagtgttcaggcaatcatggagatcgatctgcttgcttgcaccgagcaaatgatccaatttttaacattgagaattgttcgtttccattctgccagggtgagctgaggaggatccactgaggtggcggcggtcgagatggggctggatttgggagctctcgttctcaaatccggcgggctgttggtgtcggactacgactcgatcgtcgcgatcaacatcttcgtggcgctgctgtgcagctgcattgtgatcgggcacctgctggaagggaaccggtgggtcaatgaatccatcaccgcgcttgtcatggtgagatgagagggctctctggccttgcaccccaggtgtttgtggttttgccttacaggggagtggttttgagttttgttctgtgggttggcgcttgcaggggctgatcactggaggtgtgattctgctcgtcagtggtgggaagaactcgcacattcttgtgttcagtgaggacctcttcttcatttatttgcttccaccgatcatctttaatgctgggtgagctttctgtgtacctatagctcttctagtgagctcccaaccaaagcggaatttattttgttgttcttctgtacaagaaaagaaggtgccttgtcttagtttaatttggttttggctaatttaatcttgagagcaaaatgcaccgcaataggactcacttgagaaattcatgtatttctgaagtatgcatatgatgatattattattgccattctgtataaaatattacttagattcctctggatgtatcaaacccatgtttctaagacttcctcaaaacctatgtgatttgtgaatgctaaggtacacttattgagctggatgtataaaatagtcaactgcccacccattcccatgaaattatactgaaaaatgaattaaactatcacgtctgtcccaaacaattatttccccccctgaaatacagacttaaaaaggattgtatcacagtagtacatgaagcccttttacaattagaggacttggtgatgattggatccaagtatgtctaatcattcttacattcttactgaacgtgagtaagcttgtgagtcatttagattatttttcctgactgtgcaagtatatatatagtctttatagagaatcagcatccttactctgccctgtttcgaacctaggaaattgcatgcattcctgcagtaactgaattgattaatatgaatttcctgtgtatttctttggattagctaataacattttaagctccagcattatatttttgtgcagaaatacatgtattttcagttctcgctaaaacatttgaccctaacatcaaagtgatagcctgaagttacttacattttatataagtgaagcttttaactgaaatgcatctttgtttataatcatcaggtttcaagtaaagaaaaaacaattcttccgcaattttatgacaattattttatttggtgctgtggggacattgatatcctttgtgataatctctctaggtaagttgctgaattctttgctcagcttacatcatcttattttggttccatattaatgatcacaagataaccaactatatgaacacctacaccaaaatacaaaatcttggtgtttaacacctgaaaccaaatatcatcatttcaactttcaagtatgtgtgactgatttctttgagattaagataaattaaacactggtttaagagagtaaaagaatcagtaatgagccaatcgcttctatatgaagtggctacatgatgcatgaaaatccataattcagtacggagaagccagctggatagtttttttcagttgtggagctggatgtaaaagtatgtatgttagatgcacggttgtttgccttattgtattcattactcaatggtacaaacatgatttgttcaaagtctcaaaccttgcatcctcaaactttgatatgttgctctggccgctaagattttccttttttctaatggacatatcaggtgccatgacattgttcaaaaaacttgatgttggtccactccagcttggggactatcttggttagatactttattcttggcctttctacacttcaaaattattgaagcgactggttggactttggtaccattgaatacatcatcattctgctcgctgtttatctttttgtttaatccatatatgcagcaattggggctatcttctcagcaacagattctgtttgcaccttacaggtttttccatttaatgacctgttgttaatgtcttgtaaaatgaaacagcacaccattaaatatgcaattttgttacttgcaggtgcttaaccaagacgaaacacccctactctatagtctggtttttggtgaaggggttgtcaatgatgctacatctgttgtgctctttaatgcaattgaagacattgatattgctaattttgatagccttgttctactagcgttcataggaaattttctctacctattcttcaccagtacccttcttggagtagttgtaagtctctttgtttttgacaacctccactgatctttccttttcttttccatttactaccttcctttctgatgattcatttgaccatgcctttttggactaattactggtactcactttggcaggctgggttgcttagtgcctatattattaagaaactatgttttgccaggtctgctcctatgtgatttagtcatgccacagagtagtttgttttttatgtagatatgaaaatcattgtggcaagcttgtgatgttatgcagacactcaactgacagagaagttgctatcatgatactcatggcgtacctttcatatatgctgtcgatggtgagtgcctacaaactataagaacttcaaaataagcaactctcttaagtcaaattatttcggacatttatcaattacttcctccgtcccaaaatataagcatttttagtgctaagtcaaatatttttaactttgactattaatagcaaaaaaaaaagatcaatcccgtaaaattgatgttactagatttatcattaaacaagctatcataatatacaactctctttatttaaaacattttacttttatatagatatttttggtcaaagtagcatatcaaagactgtgtcgaaatccaaaaatgcttatattttgcgatggagggagtatcatgttatatccatgtaatactaagtgtaaatttgttgatgttttactcttgtacttcttttggcagtctgtaatttctttaatctcactttgcaccagcatcttccaaagtacatgatattgatattttttttgaccctttcatatatatatatttcagctgctagatctgagtggcattctcactgtgttcttctctggaatagtaatgtcacattacacttggcataatgtgacagaaagctctaggattactaccaagtatgtactgtctgataatcagttttactggcaacccttgtggtttcttttagatgaaaatatttatgtatatggcttcctgatattcttcattcattttacaggcacacttttgctactttatctttcattgctgaaatttttctatttctctatgttgggatggatgcactggacattgaaaaatggaaattagctagcagcaggtgtgtttttgtccacgaccaattcataaagtttcttctgatattttcattatccgatggtttggtttgcatccactggtgtagcgtgttattcattggtgggatccatggccagaataaaaacaaatgatcgtgttctttcatccattctctcctgtctgccaaaggaccgcacctgctcctttcatatgttggaaaccacgagcaagtatctttttttcggtttggttcaaacaaaagaactagttttgcttttttgtctgcctcctggttcaagtccccggtggtaatgccttgaacaattgcctctatggttcaatttttccatcactagggatgctgtaatttgcttagctccttcttagactgatggtcctgtcagctgacaaaagtatattctatgtgaggtgatatgttgttgatgagagaaagtcggaacccttccttttcagtttggagaagtctgcaaagaacatcttcaagcttctatgattctattaattgttgtttggcatggtgcacactgttaaacacaggctcacacaacagcaactaccttgcatgtcttgcccatgttttttttttctgaacataataactaatttatatcagttttccttatgatgcagtcctaaaaaaccaattgctttaagtgcaactatattgggcttggttatggttggaagagcagcatttgtattccctttgtctttcttatccaatctaagtaaaaaagagacacgcccaaagatctccttcaagcagcaagttagtattgaccttttttattcttatgtagttgtatcactttctttccctcctgaaaacagagggagctaagcagctaactgtgatgggtttattctctaggtaatcatatggtgggcaggtctcatgagaggagcagtatcaatagcacttgcctatcacaaggtgatgtttgatggttaacctgcctctctgaaagtgatttggaaccactaccacattaatttactaaaacctagtctgatatgtaacgttctcgtaaaactttgcagttcaccgcatctggtcatactgaattgcgaatcaatgctatcatgatcaccagcacagtcattgttgttctgttcagcacaatggtaaggatgtaatgctttctctctgttattatcttggatggttattttctgctcagcaggtgtatttctagcaatctgttgatagatttgtgcacttttgtttgtgtgtgctatatttggttcagccaagtcaataggggacatgtgattatatgagcgtaaacaaatctaatgcagtatttatcatttctttatatgacgcttacagattaagtgaaatacccatgaacaatgcagccatacggggattatcaatgtatatgatcctgtttaatctagaaaagaagtgatatcatacatttccgtttccatcgtgtacaaagaaagtagtccaattattatcactttgctaatgtatacaccatcaatatttgtttcaggtttttggtttttttaccaagcctctcctcaatctcctcatcccaccaaggcctgacatagcagctgatctctcaagccagtcaatcatagacccacttcttggaagcctgctggggtctgacttcgatgtaggccagccctcccctcagaacaaccttcagcttcttctcaccattcagactcgctccgttcatcgcgtgtggcgcaagtttgatgatagattcatgcgcccgatgttcgggggccgaggcttcgttcctttcgtgcctggttcgccagtggagcggagcatccatggatctcaactgggcactgtgactgaggctgaacatagctgagtttgaggttcagaaggtgcaagcatttctgtaaattttcagagaccactcaattttgttccaggatacatttgtgtactgttgtcatatcttgtgcagatagtttgtgtagaacgacgtatttaagctggtataggttcatattggaagccattattccaagtgtataattcatctgtaaatttacatgttgtttgtagaggataaacaaatgcattgtattggatttgtagaaagtactccctctttgttaaatttaaatgaaggtgccacagttttcat</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061185.1 RefSeq:Os05g0148600]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 5]]
[[Category:Chromosome 5]]

@@ Line 16: / Line 16: @@
 ===Evolution===
 [[File: OsNHX Phylogenetic01.jpg|left|thumb|300px|'''Figure 3.''''' Phylogenetic analysis of Na<sup>+</sup>/H<sup>+</sup> antiporter proteins.(from reference <ref name="ref1"/>).'']]
 [[File: OsNHX Phylogenetic02.jpg|right|thumb|300px|'''Figure 4.''''' Phylogenetic tree of intracellular NHE/NHX exchangers.(from reference <ref name="ref4"/>).'']]
-*The OsNHX proteins shared between 29 and 75% identity. OsNHX1 through 4 in particular shared high similarity, with more than 70% identity among OsNHX1 through 3 and more than 50% identity among OsNHX1 through 4. The sequence of LFFIYLLPPI, which is identified as the binding site of amiloride, an inhibitor of eukaryotic Na<sup>+</sup>/H<sup>+</sup> antiporters, was identical among OsNHX1 through 3 and highly conserved in OsNHX4 and 5. The membrane-spanning segments M5 and M6 of OsNHX1, which are well conserved in the eukaryotic Na<sup>+</sup>/H<sup>+</sup> antiporters, also shared high similarity with OsNHX2 through 5, and all of the OsNHX proteins contained the residues important for Na<sup>+</sup>/H<sup>+</sup> antiport activity<ref name="ref2"/><ref name="ref3"/>.
+*OsNHX1 through 4, AtNHX1 through 4, and other most plant NHXtype antiporters are classified into a type I group, and OsNHX5, AtNHX5, AtNHX6, and LeNHX2 from ''L. esculentum'' are classified into the type II group (Fig. 3)<ref name="ref1"/>.
 *Arabidopsis contains six NHX genes and rice has five, which are distributed in a similar way: AtNHX1–4 and OsNHX1–4 constitute class
 I, and AtNHX5–6 and OsNHX5 constitute class II (Fig. 4). Members of the class-I category of Arabidopsis and rice show 54–87% similarity. Similarity among class-II members is 72–79%, but they are only 21–23% similar to class-I isoforms. These data indicate that divergence between class-I and class-II exchangers in plants occurred before the separation of dicotyledons and monocotyledons<ref name="ref4"/>.
-*''Pires et al.'' observe that multiple independent duplication events have occurred throughout the evolutionary history of the NHX family. Based on the reconciled phylogeny, ''Pires et al.''  estimate 27 independent gene duplication and 40 gene loss events during the diversification of this gene family<ref name="ref5"/>).
+*''Pires et al.'' observe that multiple independent duplication events have occurred throughout the evolutionary history of the NHX family. Based on the reconciled phylogeny, ''Pires et al.''  estimate 27 independent gene duplication and 40 gene loss events during the diversification of this gene family<ref name="ref5"/>.
 ===Knowledge Extension===

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+''OsNHX2(Os05g0148600)'', is a Na<sup>+</sup>and H<sup>+</sup>exchanger in rice (''Oryza sativa'')<ref name="ref1"/>.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+[[File: OsNHX2 Genomic organization.jpg|right|thumb|300px|'''Figure 1.''''' Genomic organization of the OsNHX2 genes.(from reference <ref name="ref1"/>).'']]
 ===Expression===
-Please input expression information here.
+[[File: OsNHX Expression01.jpg|right|thumb|300px|'''Figure 2.''''' Expression of OsNHX1, 2, 3, and 5 in rice tissues.(from reference <ref name="ref1"/>).'']]
 ===Evolution===
-Please input evolution information here.
+[[File: OsNHX Phylogenetic01.jpg|left|thumb|300px|'''Figure 3.''''' Phylogenetic analysis of Na<sup>+</sup>/H<sup>+</sup> antiporter proteins.(from reference <ref name="ref1"/>).'']]
 ==Labs working on this gene==
-Please input related labs here.
+*Division of Plant Sciences, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==

← Older revision		Revision as of 20:04, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os05g0148600\|		GeneName = Os05g0148600\|

@@ Line 69: / Line 69: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]