Os05g0195200 - Revision history

192.168.72.52: /* Structured Information */

2015-06-12T07:31:45Z

‎Structured Information

Zhangye: /* Knowledge Extension */

2015-01-22T09:28:43Z

‎Knowledge Extension

Zhangye at 09:18, 22 January 2015

2015-01-22T09:18:48Z

Show changes

124.16.129.48 at 20:05, 22 July 2012

2012-07-22T20:05:51Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os05g0195200| Description = Zinc finger, CCCH-type domain containing protein| Version = NM_001061396.1 GI:115462522 GeneID:4338037| Length = 148..."

2012-06-24T10:10:29Z

Created page with "{{JaponicaGene| GeneName = Os05g0195200| Description = Zinc finger, CCCH-type domain containing protein| Version = NM_001061396.1 GI:115462522 GeneID:4338037| Length = 148..."

New page

{{JaponicaGene|
GeneName = Os05g0195200|
Description = Zinc finger, CCCH-type domain containing protein|
Version = NM_001061396.1 GI:115462522 GeneID:4338037|
Length = 1484 bp|
Definition = Oryza sativa Japonica Group Os05g0195200, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
AP = Chromosome 5:5828758..5830241|
CDS = 5828952..5830160|
GCID = <gbrowseImage1>
name=NC_008398:5828758..5830241
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008398:5828758..5830241
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgatgatgatgggtgagggcgcgcacgcgccgccgtggcagcagcacgtggcgtcgccggtgagcggcgtggagggaggaggtgggagggagagcgaggtggtggccgcgccgtaccacctgctcgacacgctgcggcattacctgccgtcgaacgaggcggcggcggcggaggatgaggaggaggccgcggcggtggcggcggcggtggacgcgtacgcgtgcgatgagttcaggatgtacgagttcaaggtgcggcggtgcgcgcgcgggcggagccatgactggacggagtgccccttcgcgcacccgggggagaaggcgcggcggagggaccccaggcggtactgctactccggcacggcgtgcccggacttccgcaagggcgggtgcaagcgcggcgacgcctgcgagttcgcgcacggggtgttcgagtgctggctccacccggcgcgctaccggacgcagccctgcaaggacggcaccgcctgccgccgccgcgtctgcttcttcgcccacacccccgaccagctccgcgtcctcccgccctcgcagcagcagggctcgaacagcccgaggggttgcggcggcggcggcgcgggcgccgcggcgtccccgctcgccgagtcctacgacggctcgccgctccggcgccaggcgttcgagagctacctcaccaagagcatcatgtcgtcgtcgcccaccagcacgctcgtctccccgccgaggtcgccgccgtccgagtccccgccattgtcgcccgacgccgccggcgcgctccgtcgcggcgcgtgggcaggagtcggctccccggtcaacgacgtgcacgtctcgctccgccagctccgcctcggctccccgaggtcggcgccgtcgtgcgcctccttcctccccgccggctaccagtacggctcccccaaatcccccgccgccgccgccgccgcggcgctctacagcctcccgtccaccccgacaaggctatcgccggtgacggtcaccaccgcctccggcgccaccgtcaccgtcgagccgctcgacctcgggctcatcgaggaggagcaacccatggagagggtggagtccgggagagctctccgggagaaggtgttcgagcgtctcagcaaagaagccaccgtgtccaccgacgccgccgccgccgccgccggcgtcgcgcccgacgtcggctgggtatccgacctcatcaactga</cdnaseq>|
AA = <aaseq>MMMMGEGAHAPPWQQHVASPVSGVEGGGGRESEVVAAPYHLLDT LRHYLPSNEAAAAEDEEEAAAVAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFA HPGEKARRRDPRRYCYSGTACPDFRKGGCKRGDACEFAHGVFECWLHPARYRTQPCKD GTACRRRVCFFAHTPDQLRVLPPSQQQGSNSPRGCGGGGAGAAASPLAESYDGSPLRR QAFESYLTKSIMSSSPTSTLVSPPRSPPSESPPLSPDAAGALRRGAWAGVGSPVNDVH VSLRQLRLGSPRSAPSCASFLPAGYQYGSPKSPAAAAAAALYSLPSTPTRLSPVTVTT ASGATVTVEPLDLGLIEEEQPMERVESGRALREKVFERLSKEATVSTDAAAAAAGVAP DVGWVSDLIN</aaseq>|
DNA = <dnaseqindica>82..1290#cacagcggatcacggcggcgacttcggacgaacaccttgcctcgccggagttggagaagaggagaggagttagagagcaagatgatgatgatgggtgagggcgcgcacgcgccgccgtggcagcagcacgtggcgtcgccggtgagcggcgtggagggaggaggtgggagggagagcgaggtggtggccgcgccgtaccacctgctcgacacgctgcggcattacctgccgtcgaacgaggcggcggcggcggaggatgaggaggaggccgcggcggtggcggcggcggtggacgcgtacgcgtgcgatgagttcaggatgtacgagttcaaggtgcggcggtgcgcgcgcgggcggagccatgactggacggagtgccccttcgcgcacccgggggagaaggcgcggcggagggaccccaggcggtactgctactccggcacggcgtgcccggacttccgcaagggcgggtgcaagcgcggcgacgcctgcgagttcgcgcacggggtgttcgagtgctggctccacccggcgcgctaccggacgcagccctgcaaggacggcaccgcctgccgccgccgcgtctgcttcttcgcccacacccccgaccagctccgcgtcctcccgccctcgcagcagcagggctcgaacagcccgaggggttgcggcggcggcggcgcgggcgccgcggcgtccccgctcgccgagtcctacgacggctcgccgctccggcgccaggcgttcgagagctacctcaccaagagcatcatgtcgtcgtcgcccaccagcacgctcgtctccccgccgaggtcgccgccgtccgagtccccgccattgtcgcccgacgccgccggcgcgctccgtcgcggcgcgtgggcaggagtcggctccccggtcaacgacgtgcacgtctcgctccgccagctccgcctcggctccccgaggtcggcgccgtcgtgcgcctccttcctccccgccggctaccagtacggctcccccaaatcccccgccgccgccgccgccgcggcgctctacagcctcccgtccaccccgacaaggctatcgccggtgacggtcaccaccgcctccggcgccaccgtcaccgtcgagccgctcgacctcgggctcatcgaggaggagcaacccatggagagggtggagtccgggagagctctccgggagaaggtgttcgagcgtctcagcaaagaagccaccgtgtccaccgacgccgccgccgccgccgccggcgtcgcgcccgacgtcggctgggtatccgacctcatcaactgagcaaacccaacaaggcggcagccatggctgagtaagaattttcctcatgcctccatagtggaagcagaaggtagcaggaagagaaggaaaaaaaaagaaaatggaaaagtttttccaaccaaaaaaattctattatttttttattttagtttcttgcttgttagattctcctaatccttgtacatatgttcatc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061396.1 RefSeq:Os05g0195200]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 5]]
[[Category:Chromosome 5]]

@@ Line 64: / Line 64: @@
 *Plant RR-TZFs are involved in '''RNA regulation''' (Fig. 2), plant RR-TZFs can bind specific RNA elements, interact with protein partners, localize to PBs and SGs, and affect plant growth, development, stress response and RNA stability (Fig. 2)<ref name="ref7"/>.
-*Although information has been gained rapidly in the past few years, the exact functions and underlying molecular mechanisms for plant RR-TZF proteins remain elusive. One of the challenges is functional redundancy of the gene families. Because many RR-TZF single KO mutants display subtle or no phenotypes, overexpression has been used as a common approach for functional characterization. This has
+*Although information has been gained rapidly in the past few years, the exact functions and underlying molecular mechanisms for plant RR-TZF proteins remain elusive. One of the challenges is functional redundancy of the gene families. Because many RR-TZF single KO mutants display subtle or no phenotypes, overexpression has been used as a common approach for functional characterization. This has raised the possibility that the observed phenotypes may be biased due to non-specific effects caused by ectopic expression<ref name="ref7"/>.
 *'''Zinc finger proteins''' constitute a large and diverse '''transcription factor family'''. Based on their individual finger structure and spacing, zinc finger proteins are further '''divided into nine types''' (C2H2, C8, C6, C3HC4, C2HC, C2HC5, C4, C4HC3, and CCCH, with C and H representing cysteine and histidine, respectively) that are generally associated with specific molecular functions<ref name="ref8"/>. Many zinc finger proteins are involved in abiotic and biotic stresses<ref name="ref9"/><ref name="ref10"/>.
@@ Line 71: / Line 70: @@
 *Overexpression of GhZFP1 from cotton in tobacco enhanced tolerances to drought, salt and salicylic acid (SA) as well as fungal disease tolerance. CCCH-type zinc finger proteins may be unique to higher plant species<ref name="ref8"/>.
-*Among the different types of zinc finger proteins, the CCCH proteins are a large family containing 1–6 copies of CCCH-type motifs. A genome-wide analysis of the CCCH gene family identified a total of 68, 67, 68, and 91 CCCH genes in Arabidopsis, Oryza sativa<ref name="ref11"/>, maize<ref name="ref9"/> (Peng et al. 2012), and Populus<ref name="ref12"/>, respectively. Although CCCH zinc finger proteins belong to a large family, their functions in plants are poorly understood. Only a few CCCH proteins have been characterized and shown to play diverse roles in plant developmental processes and environmental responses<ref name="ref10"/><ref name="ref11"/><ref name="ref12"/>.
+*Among the different types of zinc finger proteins, the CCCH proteins are a large family containing 1–6 copies of CCCH-type motifs. A genome-wide analysis of the CCCH gene family identified a total of 68, 67, 68, and 91 CCCH genes in Arabidopsis, Oryza sativa<ref name="ref11"/>, maize<ref name="ref9"/>, and Populus<ref name="ref12"/>, respectively. Although CCCH zinc finger proteins belong to a large family, their functions in plants are poorly understood. Only a few CCCH proteins have been characterized and shown to play diverse roles in plant developmental processes and environmental responses<ref name="ref10"/><ref name="ref11"/><ref name="ref12"/>.
 ==Labs working on this gene==

← Older revision		Revision as of 20:05, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os05g0195200\|		GeneName = Os05g0195200\|

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 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]