Os05g0446000 - Revision history

Liman at 03:30, 19 November 2016

2016-11-19T03:30:04Z

Liman at 03:15, 19 November 2016

2016-11-19T03:15:11Z

Liman at 03:14, 19 November 2016

2016-11-19T03:14:35Z

Liman at 03:09, 19 November 2016

2016-11-19T03:09:56Z

Liman at 13:21, 15 October 2016

2016-10-15T13:21:55Z

192.168.72.52 at 08:31, 14 May 2015

2015-05-14T08:31:17Z

124.16.129.48 at 20:11, 22 July 2012

2012-07-22T20:11:10Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os05g0446000| Description = Similar to Transcriptional activator DEMETER (DNA glycosylase-related protein DME)| Version = NM_001187523.1 GI:29772..."

2012-06-24T10:23:44Z

Created page with "{{JaponicaGene| GeneName = Os05g0446000| Description = Similar to Transcriptional activator DEMETER (DNA glycosylase-related protein DME)| Version = NM_001187523.1 GI:29772..."

New page

{{JaponicaGene|
GeneName = Os05g0446000|
Description = Similar to Transcriptional activator DEMETER (DNA glycosylase-related protein DME)|
Version = NM_001187523.1 GI:297724176 GeneID:9272172|
Length = 4648 bp|
Definition = Oryza sativa Japonica Group Os05g0446000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
AP = Chromosome 5:21897542..21902189|
CDS = 21900924..21901121|
GCID = <gbrowseImage1>
name=NC_008398:21897542..21902189
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008398:21897542..21902189
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgggtacaattcagagtatgcacctatgcatcttcagccaaatggcttatacactgaagcttccaacactgaaagtgaaagagaagctagccaactgcaacaatcagcggaagctgttatctgtgacagcctcagtaagttggaatcggctatggagaaaattcagggtcaaaatcctcaagaatcaagtggcttag</cdnaseq>|
AA = <aaseq>MGTIQSMHLCIFSQMAYTLKLPTLKVKEKLANCNNQRKLLSVTA SVSWNRLWRKFRVKILKNQVA</aaseq>|
DNA = <dnaseqindica>1069..1266#atccttgatcctccactctctcttcccctttcccatggtcagtgcgagctgcaggtaggcgtcgcctctgcgagaaggcgcaggcggcggtgtgcacggcgtcctccccttcccgattccgcccgtaccctcctcctccgtggcctgtgcggcctggcgccggcgtgcgcacggccggcgaggaggtttggtgggggatcgatcgacgcggccaacctccttccatctgcctccgtctcggttcgaatcgaaaaaaaaattaggggttcagttgaaccccggcaatccacgttaggttcgcgcctggctatatttttcctcttattttctgggttttggggaggtttttctcgttcccttttcattggttgccttgtcgtttgtatttcgatttgtatgcaatttctcttcttcgtttaggttgtggaagaagcagccatggatccctcagggctcaacctgcaggggaatcctgctgagaaccaggagagctggacctccggcgtgtcagttgggaggggcaccccaaatttgggtgttgggacggccgtggcaggccggagctgcccgtcatcaacattgttcccggggtcctccctgtcgtcgacggcgttgctgaataccatgcacgagggctcctttccacagacagccttggtggcgggttccgtgagcagcgccgatgagcagcatggtgcgccccccgtacggccatcctacaaccttcctgcaggatgcacgcaggtgccgataagtattctggtgttccacaggaggctgacggggaggggatccaggtgccggtcgccgcaatctcgtagctttatgcctgctcctgcactgtccggtgtctcagagggtgagcatttcttgatgtttcttcttttaaggttgttatatggtgttatggatgaatttactgtcacgatcgactgactgccgtttccgattcttcagcagatggagcttatgggccgattcctcaaagtgatttcttgtcgcttcgaggtccatctgaagtttttcctggtgatatggcaatgaatcattcagaaccggccacttcatatgggtacaattcagagtatgcacctatgcatcttcagccaaatggcttatacactgaagcttccaacactgaaagtgaaagagaagctagccaactgcaacaatcagcggaagctgttatctgtgacagcctcagtaagttggaatcggctatggagaaaattcagggtcaaaatcctcaagaatcaagtggcttagttgcagagggttccgctgatgataacattcacaagtaccatcagaaagctaaaagggccaggacacaaatcactcacagtgacaaaatagacttaccaacacaagctgtatctgcatgcaaggaaaaaacaataactcagatagagatgcagattgcagatgctgagagaactgaagcactcaagggtgaggatgccccagcacaaaagctgaagactcgaaggagaaagcacaggcccaaggtaatccgtgaggacaggccagccaaaaagcaaatggccacaacatcagaagaaaaacctctcaatcagaaacccaaaagaaaatatgtgcggaagaatagaaaccccagttctttggagaagtgcgcagaaccttttagtgaccattcaatttctagagaatccagaactaccgttagaagcagcattgcatcagttcgaagaaggctgcaatttgagttcggggagcacggggtgcagagggaccaatcatcaatgaccaattcatggtaccaaaaccaggagaaacctgttaatgctgagagttctttgtgctcagtgactaaatcgtccgtgcaggttgaacatggacaggaattacacatggaaaattcaccagaagggttgttttttggcatcaactccaaactgaacaaaattttagatgagtacatacatttgccagaagccgcaccaaaaccttcagagcaaatcccactggctgcttctggtcatgttagcgaggaactagcaaggaaacaatatgatgtgagacacactcatgatcctgattctacaagttataatatagaaaggagtggtctgatcacaacgaaagggcacaaaaaggacctagacctgaactattctaacacaaatggttttcagatgtattgttcggctagtttgttaccagaaatggactccacaaagggcagtatgactaaggtatcaaaaatggacaagaacaaaaaacgacattatggaggtgagtcctccctagctggcacacagagctccattatcatgagaactgcagctgagatgctagcagtttaccaagcttgtggtattaaaaagaagcgatcggcccgagtccgcaggaattcctttctttctgttatggatcttgagaagaatacttcacaagaatcaacaagattgccgcggtcatgcatggaggccctgtatgagagttcctacataaaatttatgaccaagaaacgttcacagaaggcacggctcaactctcccaattccattcaaccaaatatagatcagaaaaacaggttttcatctgaaacagttttttctggaggattcaatggattgaaaagatcagaggaaactttccagaaaactttacctcagattccagatgataagaggatcaaccttgacattcattgcaaagtaccagtagaaagctcaccaaatacatcaacgccaccatatatggattaccttcaaggagttacatcaaagtttagatactttgatttgaacactgagcaggtgcataaaactgagatgcatttgtctcaaaccatgccctctctttcttctttaggagcaacaaattatctaccgaatgctctagtcccatatgttggtggggcggtggttccatatcagacacagtttcatttagtcaagaagcaacgccctcgagctaaggttgacttggattttgaaacaacgagagtttggaaccttctgatgggtaaagcagctgaccctgtagatggaactgatgttgataaagagagatggtggaaacaagaaagagaagtttttcaaggtcgtgctaattcattcatagcacgtatgcgcctagttcaaggtacttttagtgctggtgtaaatccttttttgaagcccatggtatgctgagctcgttttccgtgagcctgctttttaccctgtctattactgtgtagactatctcaggtgcttgtcagccatatagaattttctttagaaacaaagggcaaagctcccgccagccatatagaactccttgaaatgttgtcaggttatttgatccattattaaaccacctaatttaaagaatttgtttaaatgcgctgtatatgatcttacaacttggtggaggaggaattacaaaagcatctcttatgctgaagtagctccactgctcaacatggggaaattagcatgcaaaggaacttttgagataatcgtatgtatgtgcttagataatcaaacatatatactttcttttataatcttataggtagcattcaaacttcacagtttgcaatttgacgagctaacctcttgtttacaaacctgagttcaggccttcatctccaaagggtggaaggaaatcttccatgttcattaacagtgttgaacaatgtgatcacgaccatttagactttgtaatgtaatcttcgtttggccattacagtatacaggaaaaaatagaaaagcgaccatgtaacgtttgcgatataaaattccgtgttttatatccaggattaacgttcttacctaaccttgcatttgcctgtttatcaggtgacaggcgcttttctccttggaaaggatcagtagtggactctgtagtaggagttttcctcacacagaatgtagcggatcatctttccaggtatgatattcacaatcagagtgcttctaataaattcttgattcttttgcaataaggaattgaatgtaccagcacctcgtcgtgacaactattttggcaatatacagctctgcatacatggcccttgccgcaagttttcctacagggtcacatggcaattgtaatgatggcattgctggtcaggacaatgaagaaatcattagcacgagtgcagtaggagacagaggcacatttgaattcttttataatgggtcaagaccagatataggattaaattttgagttctcaatggcctgtgagaagatccacatggaaccaaaggacaatactacagttaatgagttaactaaaggtgaaaattattctcttcattgcaaagaatcagctggaagtctttgtgaccacgagacagaaatagatcataaagcaaaatcaatatcagatttctctgcagtagaattaacagcatgtatgaaaaatctacatgcgacacagttccagaaggagatatcattatcccaaagtgttgtaacttcagagtcaattcttcaaccaggattacctttgagttctgggatggatcatgctcgtagaaattttgttggtagcattagtgacacagcttctcagcaggtgggaagcaattttgatgatggaaaatcattaacaggaaatgatgtcacagccaatgaaactgagtaccatggaatcaaagcagcagcaacaaataattatgttgtagatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001187523.1 RefSeq:Os05g0446000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 5]]
[[Category:Chromosome 5]]

@@ Line 6: / Line 6: @@
 ===Function===
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+[[File:Os05g0446000-1.png|right|thumb|400px|'''Fig. 1. Enzymatic activity of DNG701 on 5-meC-containing DNA substrates in vitro.''' '' <ref name="ref1" />.'']]
-===Mutation===
+* Knockout or knockdown of '''''DNG701''''' in rice plants led to DNA hypermethylation and reduced expression of the retrotransposon Tos17. Tos17 showed less transposition in calli derived from '''''dng701''''' knockout mutant seeds compared with that in wild-type calli.
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+===Overexpression===
 ===Expression ===

← Older revision		Revision as of 03:15, 19 November 2016
Line 1:		Line 1:
−	The rice gene ~~DNG701~~ was reported as '''''~~Os05g0446000~~''''' in 2011<ref name="ref1" /> by researchers from USA and China.	+	The rice gene Os05g0446000 was reported as '''''DNG701''''' in 2011<ref name="ref1" /> by researchers from USA and China.

	==Annotated Information==		==Annotated Information==

@@ Line 1: / Line 1: @@
-The rice gene  was reported as '''''''''' in 20<ref name="ref1" /> by researchers from China and Japan.
+The rice gene DNG701 was reported as '''''Os05g0446000''''' in 2011<ref name="ref1" /> by researchers from USA and China.
 ==Annotated Information==
 ===Gene Symbol===
-*''''' <=>
+*'''''Os05g0446000 <=> DNG701,OsDNG701
 ===Function===
@@ Line 19: / Line 19: @@
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
+*Department of Plant Pathology, Ohio State University, Columbus, OH 43210;
 ==References==
 <references>

@@ Line 23: / Line 23: @@
 <references>
 * <ref name="ref1">
+La H, Ding B, Mishra GP, Zhou B, Yang H, Bellizzi Mdel R, Chen S, Meyers BC,
 </ref>
 </references>

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice gene  was reported as '''''''''' in 20<ref name="ref1" /> by researchers from China and Japan.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
 ===Evolution===
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]

← Older revision		Revision as of 08:31, 14 May 2015
Line 20:		Line 20:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]
−	~~GeneName = Os05g0446000\|~~
−	~~Description = Similar to Transcriptional activator DEMETER (DNA glycosylase-related protein DME)\|~~
−	~~Version = NM_001187523.1 GI:297724176 GeneID:9272172\|~~
−	~~Length = 4648 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os05g0446000, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 5\|Chromosome 5]]\|~~
−	~~AP = Chromosome 5:21897542..21902189\|~~
−	~~CDS = 21900924..21901121\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008398:21897542..21902189~~
−	~~source=RiceChromosome05~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008398:21897542..21902189~~
−	~~source=RiceChromosome05~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atgggtacaattcagagtatgcacctatgcatcttcagccaaatggcttatacactgaagcttccaacactgaaagtgaaagagaagctagccaactgcaacaatcagcggaagctgttatctgtgacagcctcagtaagttggaatcggctatggagaaaattcagggtcaaaatcctcaagaatcaagtggcttag</cdnaseq>\|
−	~~AA = <aaseq>MGTIQSMHLCIFSQMAYTLKLPTLKVKEKLANCNNQRKLLSVTA SVSWNRLWRKFRVKILKNQVA</aaseq>\|~~
−	DNA = <dnaseqindica>1069..1266#atccttgatcctccactctctcttcccctttcccatggtcagtgcgagctgcaggtaggcgtcgcctctgcgagaaggcgcaggcggcggtgtgcacggcgtcctccccttcccgattccgcccgtaccctcctcctccgtggcctgtgcggcctggcgccggcgtgcgcacggccggcgaggaggtttggtgggggatcgatcgacgcggccaacctccttccatctgcctccgtctcggttcgaatcgaaaaaaaaattaggggttcagttgaaccccggcaatccacgttaggttcgcgcctggctatatttttcctcttattttctgggttttggggaggtttttctcgttcccttttcattggttgccttgtcgtttgtatttcgatttgtatgcaatttctcttcttcgtttaggttgtggaagaagcagccatggatccctcagggctcaacctgcaggggaatcctgctgagaaccaggagagctggacctccggcgtgtcagttgggaggggcaccccaaatttgggtgttgggacggccgtggcaggccggagctgcccgtcatcaacattgttcccggggtcctccctgtcgtcgacggcgttgctgaataccatgcacgagggctcctttccacagacagccttggtggcgggttccgtgagcagcgccgatgagcagcatggtgcgccccccgtacggccatcctacaaccttcctgcaggatgcacgcaggtgccgataagtattctggtgttccacaggaggctgacggggaggggatccaggtgccggtcgccgcaatctcgtagctttatgcctgctcctgcactgtccggtgtctcagagggtgagcatttcttgatgtttcttcttttaaggttgttatatggtgttatggatgaatttactgtcacgatcgactgactgccgtttccgattcttcagcagatggagcttatgggccgattcctcaaagtgatttcttgtcgcttcgaggtccatctgaagtttttcctggtgatatggcaatgaatcattcagaaccggccacttcatatgggtacaattcagagtatgcacctatgcatcttcagccaaatggcttatacactgaagcttccaacactgaaagtgaaagagaagctagccaactgcaacaatcagcggaagctgttatctgtgacagcctcagtaagttggaatcggctatggagaaaattcagggtcaaaatcctcaagaatcaagtggcttagttgcagagggttccgctgatgataacattcacaagtaccatcagaaagctaaaagggccaggacacaaatcactcacagtgacaaaatagacttaccaacacaagctgtatctgcatgcaaggaaaaaacaataactcagatagagatgcagattgcagatgctgagagaactgaagcactcaagggtgaggatgccccagcacaaaagctgaagactcgaaggagaaagcacaggcccaaggtaatccgtgaggacaggccagccaaaaagcaaatggccacaacatcagaagaaaaacctctcaatcagaaacccaaaagaaaatatgtgcggaagaatagaaaccccagttctttggagaagtgcgcagaaccttttagtgaccattcaatttctagagaatccagaactaccgttagaagcagcattgcatcagttcgaagaaggctgcaatttgagttcggggagcacggggtgcagagggaccaatcatcaatgaccaattcatggtaccaaaaccaggagaaacctgttaatgctgagagttctttgtgctcagtgactaaatcgtccgtgcaggttgaacatggacaggaattacacatggaaaattcaccagaagggttgttttttggcatcaactccaaactgaacaaaattttagatgagtacatacatttgccagaagccgcaccaaaaccttcagagcaaatcccactggctgcttctggtcatgttagcgaggaactagcaaggaaacaatatgatgtgagacacactcatgatcctgattctacaagttataatatagaaaggagtggtctgatcacaacgaaagggcacaaaaaggacctagacctgaactattctaacacaaatggttttcagatgtattgttcggctagtttgttaccagaaatggactccacaaagggcagtatgactaaggtatcaaaaatggacaagaacaaaaaacgacattatggaggtgagtcctccctagctggcacacagagctccattatcatgagaactgcagctgagatgctagcagtttaccaagcttgtggtattaaaaagaagcgatcggcccgagtccgcaggaattcctttctttctgttatggatcttgagaagaatacttcacaagaatcaacaagattgccgcggtcatgcatggaggccctgtatgagagttcctacataaaatttatgaccaagaaacgttcacagaaggcacggctcaactctcccaattccattcaaccaaatatagatcagaaaaacaggttttcatctgaaacagttttttctggaggattcaatggattgaaaagatcagaggaaactttccagaaaactttacctcagattccagatgataagaggatcaaccttgacattcattgcaaagtaccagtagaaagctcaccaaatacatcaacgccaccatatatggattaccttcaaggagttacatcaaagtttagatactttgatttgaacactgagcaggtgcataaaactgagatgcatttgtctcaaaccatgccctctctttcttctttaggagcaacaaattatctaccgaatgctctagtcccatatgttggtggggcggtggttccatatcagacacagtttcatttagtcaagaagcaacgccctcgagctaaggttgacttggattttgaaacaacgagagtttggaaccttctgatgggtaaagcagctgaccctgtagatggaactgatgttgataaagagagatggtggaaacaagaaagagaagtttttcaaggtcgtgctaattcattcatagcacgtatgcgcctagttcaaggtacttttagtgctggtgtaaatccttttttgaagcccatggtatgctgagctcgttttccgtgagcctgctttttaccctgtctattactgtgtagactatctcaggtgcttgtcagccatatagaattttctttagaaacaaagggcaaagctcccgccagccatatagaactccttgaaatgttgtcaggttatttgatccattattaaaccacctaatttaaagaatttgtttaaatgcgctgtatatgatcttacaacttggtggaggaggaattacaaaagcatctcttatgctgaagtagctccactgctcaacatggggaaattagcatgcaaaggaacttttgagataatcgtatgtatgtgcttagataatcaaacatatatactttcttttataatcttataggtagcattcaaacttcacagtttgcaatttgacgagctaacctcttgtttacaaacctgagttcaggccttcatctccaaagggtggaaggaaatcttccatgttcattaacagtgttgaacaatgtgatcacgaccatttagactttgtaatgtaatcttcgtttggccattacagtatacaggaaaaaatagaaaagcgaccatgtaacgtttgcgatataaaattccgtgttttatatccaggattaacgttcttacctaaccttgcatttgcctgtttatcaggtgacaggcgcttttctccttggaaaggatcagtagtggactctgtagtaggagttttcctcacacagaatgtagcggatcatctttccaggtatgatattcacaatcagagtgcttctaataaattcttgattcttttgcaataaggaattgaatgtaccagcacctcgtcgtgacaactattttggcaatatacagctctgcatacatggcccttgccgcaagttttcctacagggtcacatggcaattgtaatgatggcattgctggtcaggacaatgaagaaatcattagcacgagtgcagtaggagacagaggcacatttgaattcttttataatgggtcaagaccagatataggattaaattttgagttctcaatggcctgtgagaagatccacatggaaccaaaggacaatactacagttaatgagttaactaaaggtgaaaattattctcttcattgcaaagaatcagctggaagtctttgtgaccacgagacagaaatagatcataaagcaaaatcaatatcagatttctctgcagtagaattaacagcatgtatgaaaaatctacatgcgacacagttccagaaggagatatcattatcccaaagtgttgtaacttcagagtcaattcttcaaccaggattacctttgagttctgggatggatcatgctcgtagaaattttgttggtagcattagtgacacagcttctcagcaggtgggaagcaattttgatgatggaaaatcattaacaggaaatgatgtcacagccaatgaaactgagtaccatggaatcaaagcagcagcaacaaataattatgttgtagatg</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001187523.1 RefSeq:Os05g0446000]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 5]]~~
−	~~[[Category:~~Chromosome 5]]

← Older revision		Revision as of 20:11, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os05g0446000\|		GeneName = Os05g0446000\|