Os05g0463800 - Revision history

Xysj2028: /* Evolution */

2017-05-12T03:36:46Z

‎Evolution

Xysj2018 at 03:43, 31 March 2017

2017-03-31T03:43:06Z

192.168.72.52 at 08:32, 14 May 2015

2015-05-14T08:32:11Z

124.16.129.48 at 20:11, 22 July 2012

2012-07-22T20:11:38Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os05g0463800| Description = Similar to CCAAT-binding transcription factor-like protein (Fragment)| Version = NM_001187531.1 GI:297724192 GeneID:9..."

2012-06-24T10:24:58Z

Created page with "{{JaponicaGene| GeneName = Os05g0463800| Description = Similar to CCAAT-binding transcription factor-like protein (Fragment)| Version = NM_001187531.1 GI:297724192 GeneID:9..."

New page

{{JaponicaGene|
GeneName = Os05g0463800|
Description = Similar to CCAAT-binding transcription factor-like protein (Fragment)|
Version = NM_001187531.1 GI:297724192 GeneID:9268669|
Length = 3989 bp|
Definition = Oryza sativa Japonica Group Os05g0463800, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
AP = Chromosome 5:22815905..22819893|
CDS = 22816411..22816437,22817347..22817397,22817472..22817564,22819003..22819136,22819289..22819382<br>|
GCID = <gbrowseImage1>
name=NC_008398:22815905..22819893
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008398:22815905..22819893
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>agaaggccatcccggccaacgggaagatcgccaaggacgccaaggagaccgtgcaggagtgcgtctccgagttcatctccttcatcaccagcgaggcgagcgataaatgccagagggagaagcgcaagaccatcaacggcgacgacttgctgtgggcgatggccacgctgggcttcgaggactacatcgagcccctcaaggtctacctgcagaagtacagagaggtgcggtgatagtaaattaactgcaaaggctggtgatggctctgtgaaaaaggatgtacttggttctcatggaggaagcagttcaagtgcccaagggatgggccaacaagcagcatacaatcaaggaatgggttatatgcaacctcagtaccataatggggatgtctcaaactga</cdnaseq>|
AA = <aaseq>RRPSRPTGRSPRTPRRPCRSASPSSSPSSPARRAINARGRSARP STATTCCGRWPRWASRTTSSPSRSTCRSTERCGDSKLTAKAGDGSVKKDVLGSHGGSS SSAQGMGQQAAYNQGMGYMQPQYHNGDVSN</aaseq>|
DNA = <dnaseqindica>3457..3483#2497..2547#2330..2422#758..891#512..605#accccgaccccttcaatcgcgcccgcctcagccgccttctcttctccagcgtccgatctccccctctcgcctctccgcctcacctccgctccgcttcccacccccgcttcctctctctctcctctccccctctctctctctctctctcctcctcgcttcaccacctcgcgcccaacccccctctctctcctctccacgtcgcgccctctccgcgcgcgcccgcgcttctatataaggtacgcctacgcctctctctccttcgctcgaatcccatttctagggttttgggatgcggggactgatggatctagggtttgggtttgggtggtggtggtgcaggaggggggaggtgggatggcggatgggccggggagcccggggggaggaggggggagccacgagagcgggagcccgagggggggagggggaggagggggaggtgggggtgggggtgggggggtgagggagcaggacaggttcctccccatcgccaacatcagccgcatcatgaagaaggccatcccggccaacgggaagatcgccaaggacgccaaggagaccgtgcaggagtgcgtctccgagttcatctccttcatcaccagcgagtgagtcgtcgccctcgtcctcccccctcttgtgctctgctctgctctgctctgtcttcttttgagttttgagctttgagctcgttgtttgacttgtcgttggcggcgatgagatgtgactgggtttttgttgtggtggggcaacattacagggcgagcgataaatgccagagggagaagcgcaagaccatcaacggcgacgacttgctgtgggcgatggccacgctgggcttcgaggactacatcgagcccctcaaggtctacctgcagaagtacagagaggtgcgtactgatgtggatgtttggaattggggtgattctctgttgatttaaaaaggtttagttattgctttgcgagttaggtagggacatcgctagtttgctttttcgaggtgtgtctgaattactaataacttgcttggtaaccttaatattattagggagtatactctagtaatttgttcaacttgaggacggatggataacttgtaatgtttgtggtatgagctaatttctttagctcatgttgctttggaagaaagattcttgtcagcaaatcttgctttatgattccaattttataccgtgaaaggaatggttggaatatggtgttagtacattaattaattaattgaaagctgttgcttggacctgaaaacacagcagtgatcatttgcagtaacctactaaccttgtaccaagtccaaatttttatgaatcgttgagctactaaaatgctatttaattcatttaccatgtttaccgtcaatcttaaattttataagatccaatgcaaatacagtaaaatgttttgaatcaaccagagatcctataaaaagatcacctttacactgaaagtttacttacctgaagataaaacttcctacttacacgacatatcatagtgtagctttaaaaaaagaccaaattctctacaacattttttttagtgtagcctggagttaaaacattaatactttgtgtatgcctgtcattttcgtttgttaagtctcctttatcaatctaatatggcttctcttgtttgtttttgtttggtgaatggctgtgctggttgcagatggaggtacgtggtatttaactattttgttatcatgttccataggctactgatttttttgcttgatgatgagtgcctcctacaaatccatgcttttctttgtgttcatatttcatagacactaagaggcattcatatttcatagacactaagatgcaaatgttcaagatatataaagttcataaataaaatcagccttgaaaatgaattattgatctatacaatcctgtctgcatcatgagcttagctcacctgtgcagctagctatgtccaaattttgaaggcatatagaattctcttcatgggatccaataattccatcagttttagatcgtatatataccttgttcttgtcaattggatgtactatgatgcttcgtatagtcttgagtgaaacaaattttttatcaagtttccctgtatcaattctatatgggccaaaaaattgcatgctacatgcctttgaaaatcaataggtaaaaagacaagatgaatcatgattctgcaccatacagcaagcagagcactcttttactatggttaagaccaagaattctattatgattcatgattgtactatcatgcctacacaaaatctgagatgtgttgagtattgctcagctcttttatcatcattaaaacatagggtgatagtaaattaactgcaaaggctggtgatggctctgtgaaaaaggatgtacttggttctcatggaggaagcagttcaagtgcccaaggggttagtgtctgcttgtttgttttcttgttcctgtccaacaggatgtgaacttacactatttttattctttatagatgggccaacaagcagcatacaatcaaggaatgggttatatgcaacctcaggtgatttatcttcaattgtttggaattactggcagtatgcatatacacatggttgatcgttgtcaaagtattttgctgaatataccgtcatgtcttgggagcatacaagacaatattgtggtttagacttcggggagttccattagctagttgattcacagttgtgtttgatttttttcctctttgttttaggatatttttactggccatgtagtacgtttagtttagatttatcagctttattatgcctatatttgttctaataataacatgaacgtgagattctctggtaaatatctagtagtgccatcctgctaccattctactgccactggtcattttaaagagacacatgagaagataacttttaatctccttattgtgccgtccttttgtttcttcagtgttaggagacttctactgtttggaagttcctggagtagtaaacatgattggcctctccatcctctacttcccctgtaccaaaaaaaatcaattccttgcaatgaatctagacaaatgtttgtccagattcaaagcaagttgttttttttggtacagagagtatgttgttggactgtcccttttaggttgattcattgtctagttactgagatcaaagaattactggatattttgtgtatgaacagtaaatgaatgataaatccataaatctaggtgcatttccttcagcagaatgcatccagccagagcttgtttcccttcctttttttgttttggttagatctgggcaaaatccattaaaaaaactgaaacatgcacaaagttactgtttgagtgtaagagttcacttttcaatatttctggcataagatattgccacttgcataatctcatctgatctcgatacgtttgctgatgtttttttctttcttttgccttgcccagtaccataatggggatgtctcaaactgaagataggaccttttcatgcaactgttgctaggtatacctaatccgtcgaagaaccatatgctatttcgaatttttgatatcttgtacgggaatggttcatgtgccgacacatttgctaatagcgcaggtggattttatttggtgctgcagtcgttagctaatatatatacctacacctcatggtgagcagtgaaggaagtaacttgctaccacctctaggtcccatgtttgtcaaccaggaactgatgctgcttggaagcgtcgagccaaggctgcttctcagatgtaaattactccccgtgaggatagtttcggttcgtggtctagctctgttgttgtatgtatattcaggataatttaacaattggtctttggctgtcattcggttccatataatctgtattgggaggcataaatattcatgttgtatttcgtcctgaactagcgtgttgtactattgagaaatagatgctctctgtaatggtagcaattttactctgattccc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001187531.1 RefSeq:Os05g0463800]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 5]]
[[Category:Chromosome 5]]

@@ Line 11: / Line 11: @@
 * Co-expression analysis also revealed that OsNF-Y genes might interact with each other, suggesting that NF-γ subunits formed complexes that take part in transcriptional regulation.<ref name="ref1" />
 ===Evolution===
-* NF-γ is a heterotrimeric complex composed of three subunits: NF-γA (CBF-B/HAP2), NF-γB (CBF-A/HAP3), and NF-γC
+* NF-γ is a heterotrimeric complex composed of three subunits: NF-γA (CBF-B/HAP2), NF-γB (CBF-A/HAP3), and NF-γC (CBF-C/HAP5).
 * NF-γ complexes are CCAAT-specific transcription factors that bind to CCAAT sites in DNA to control the expression of target genes<ref name="ref1" /> .
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
 * College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice '''''Os05g0463800''''' was reported as '''''OsNF-YB3''''' in 2016 <ref name="ref1" /> by researchers from China.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+* Nuclear factor γ (NF-γ) is a ubiquitous transcription factor that regulates important physiological and developmental processes.<ref name="ref1" />
+* In plants, the roles of NF-γ were identified in regulation of embryogenesis, flowering time, chloroplast biogenesis, seed germination and stress tolerance.<ref name="ref1" /> <ref name="ref2" />
 ===Expression===
-Please input expression information here.
+* Expression profile analysis covering the whole life cycle revealed that transcripts of OsNF-γ differentially accumulated in a tissue-specific preferential or constitutive manner.<ref name="ref1" />
+* Analysis of expression correlation and Gene Ontology annotation suggested that OsNF-Y genes were co-expressed with genes that participated in stress, accumulation of seed storage reserves, and plant development.
 ===Evolution===
-Please input evolution information here.
+* NF-γ is a heterotrimeric complex composed of three subunits: NF-γA (CBF-B/HAP2), NF-γB (CBF-A/HAP3), and NF-γC
+(CBF-C/HAP5).
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
-Please input related labs here.
+* College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
+* College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
 ==References==
-Please input cited references here.
+<references>
+* <ref name="ref1">
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]

← Older revision		Revision as of 08:32, 14 May 2015
Line 20:		Line 20:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]
−	~~GeneName = Os05g0463800\|~~
−	~~Description = Similar to CCAAT-binding transcription factor-like protein (Fragment)\|~~
−	~~Version = NM_001187531.1 GI:297724192 GeneID:9268669\|~~
−	~~Length = 3989 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os05g0463800, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 5\|Chromosome 5]]\|~~
−	~~AP = Chromosome 5:22815905..22819893\|~~
−	~~CDS = 22816411..22816437,22817347..22817397,22817472..22817564,22819003..22819136,22819289..22819382<br>\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008398:22815905..22819893~~
−	~~source=RiceChromosome05~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008398:22815905..22819893~~
−	~~source=RiceChromosome05~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>agaaggccatcccggccaacgggaagatcgccaaggacgccaaggagaccgtgcaggagtgcgtctccgagttcatctccttcatcaccagcgaggcgagcgataaatgccagagggagaagcgcaagaccatcaacggcgacgacttgctgtgggcgatggccacgctgggcttcgaggactacatcgagcccctcaaggtctacctgcagaagtacagagaggtgcggtgatagtaaattaactgcaaaggctggtgatggctctgtgaaaaaggatgtacttggttctcatggaggaagcagttcaagtgcccaagggatgggccaacaagcagcatacaatcaaggaatgggttatatgcaacctcagtaccataatggggatgtctcaaactga</cdnaseq>\|
−	AA = <aaseq>RRPSRPTGRSPRTPRRPCRSASPSSSPSSPARRAINARGRSARP STATTCCGRWPRWASRTTSSPSRSTCRSTERCGDSKLTAKAGDGSVKKDVLGSHGGSS SSAQGMGQQAAYNQGMGYMQPQYHNGDVSN</aaseq>\|
−	DNA = <dnaseqindica>3457..3483#2497..2547#2330..2422#758..891#512..605#accccgaccccttcaatcgcgcccgcctcagccgccttctcttctccagcgtccgatctccccctctcgcctctccgcctcacctccgctccgcttcccacccccgcttcctctctctctcctctccccctctctctctctctctctcctcctcgcttcaccacctcgcgcccaacccccctctctctcctctccacgtcgcgccctctccgcgcgcgcccgcgcttctatataaggtacgcctacgcctctctctccttcgctcgaatcccatttctagggttttgggatgcggggactgatggatctagggtttgggtttgggtggtggtggtgcaggaggggggaggtgggatggcggatgggccggggagcccggggggaggaggggggagccacgagagcgggagcccgagggggggagggggaggagggggaggtgggggtgggggtgggggggtgagggagcaggacaggttcctccccatcgccaacatcagccgcatcatgaagaaggccatcccggccaacgggaagatcgccaaggacgccaaggagaccgtgcaggagtgcgtctccgagttcatctccttcatcaccagcgagtgagtcgtcgccctcgtcctcccccctcttgtgctctgctctgctctgctctgtcttcttttgagttttgagctttgagctcgttgtttgacttgtcgttggcggcgatgagatgtgactgggtttttgttgtggtggggcaacattacagggcgagcgataaatgccagagggagaagcgcaagaccatcaacggcgacgacttgctgtgggcgatggccacgctgggcttcgaggactacatcgagcccctcaaggtctacctgcagaagtacagagaggtgcgtactgatgtggatgtttggaattggggtgattctctgttgatttaaaaaggtttagttattgctttgcgagttaggtagggacatcgctagtttgctttttcgaggtgtgtctgaattactaataacttgcttggtaaccttaatattattagggagtatactctagtaatttgttcaacttgaggacggatggataacttgtaatgtttgtggtatgagctaatttctttagctcatgttgctttggaagaaagattcttgtcagcaaatcttgctttatgattccaattttataccgtgaaaggaatggttggaatatggtgttagtacattaattaattaattgaaagctgttgcttggacctgaaaacacagcagtgatcatttgcagtaacctactaaccttgtaccaagtccaaatttttatgaatcgttgagctactaaaatgctatttaattcatttaccatgtttaccgtcaatcttaaattttataagatccaatgcaaatacagtaaaatgttttgaatcaaccagagatcctataaaaagatcacctttacactgaaagtttacttacctgaagataaaacttcctacttacacgacatatcatagtgtagctttaaaaaaagaccaaattctctacaacattttttttagtgtagcctggagttaaaacattaatactttgtgtatgcctgtcattttcgtttgttaagtctcctttatcaatctaatatggcttctcttgtttgtttttgtttggtgaatggctgtgctggttgcagatggaggtacgtggtatttaactattttgttatcatgttccataggctactgatttttttgcttgatgatgagtgcctcctacaaatccatgcttttctttgtgttcatatttcatagacactaagaggcattcatatttcatagacactaagatgcaaatgttcaagatatataaagttcataaataaaatcagccttgaaaatgaattattgatctatacaatcctgtctgcatcatgagcttagctcacctgtgcagctagctatgtccaaattttgaaggcatatagaattctcttcatgggatccaataattccatcagttttagatcgtatatataccttgttcttgtcaattggatgtactatgatgcttcgtatagtcttgagtgaaacaaattttttatcaagtttccctgtatcaattctatatgggccaaaaaattgcatgctacatgcctttgaaaatcaataggtaaaaagacaagatgaatcatgattctgcaccatacagcaagcagagcactcttttactatggttaagaccaagaattctattatgattcatgattgtactatcatgcctacacaaaatctgagatgtgttgagtattgctcagctcttttatcatcattaaaacatagggtgatagtaaattaactgcaaaggctggtgatggctctgtgaaaaaggatgtacttggttctcatggaggaagcagttcaagtgcccaaggggttagtgtctgcttgtttgttttcttgttcctgtccaacaggatgtgaacttacactatttttattctttatagatgggccaacaagcagcatacaatcaaggaatgggttatatgcaacctcaggtgatttatcttcaattgtttggaattactggcagtatgcatatacacatggttgatcgttgtcaaagtattttgctgaatataccgtcatgtcttgggagcatacaagacaatattgtggtttagacttcggggagttccattagctagttgattcacagttgtgtttgatttttttcctctttgttttaggatatttttactggccatgtagtacgtttagtttagatttatcagctttattatgcctatatttgttctaataataacatgaacgtgagattctctggtaaatatctagtagtgccatcctgctaccattctactgccactggtcattttaaagagacacatgagaagataacttttaatctccttattgtgccgtccttttgtttcttcagtgttaggagacttctactgtttggaagttcctggagtagtaaacatgattggcctctccatcctctacttcccctgtaccaaaaaaaatcaattccttgcaatgaatctagacaaatgtttgtccagattcaaagcaagttgttttttttggtacagagagtatgttgttggactgtcccttttaggttgattcattgtctagttactgagatcaaagaattactggatattttgtgtatgaacagtaaatgaatgataaatccataaatctaggtgcatttccttcagcagaatgcatccagccagagcttgtttcccttcctttttttgttttggttagatctgggcaaaatccattaaaaaaactgaaacatgcacaaagttactgtttgagtgtaagagttcacttttcaatatttctggcataagatattgccacttgcataatctcatctgatctcgatacgtttgctgatgtttttttctttcttttgccttgcccagtaccataatggggatgtctcaaactgaagataggaccttttcatgcaactgttgctaggtatacctaatccgtcgaagaaccatatgctatttcgaatttttgatatcttgtacgggaatggttcatgtgccgacacatttgctaatagcgcaggtggattttatttggtgctgcagtcgttagctaatatatatacctacacctcatggtgagcagtgaaggaagtaacttgctaccacctctaggtcccatgtttgtcaaccaggaactgatgctgcttggaagcgtcgagccaaggctgcttctcagatgtaaattactccccgtgaggatagtttcggttcgtggtctagctctgttgttgtatgtatattcaggataatttaacaattggtctttggctgtcattcggttccatataatctgtattgggaggcataaatattcatgttgtatttcgtcctgaactagcgtgttgtactattgagaaatagatgctctctgtaatggtagcaattttactctgattccc</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001187531.1 RefSeq:Os05g0463800]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 5]]~~
−	~~[[Category:~~Chromosome 5]]

← Older revision		Revision as of 20:11, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os05g0463800\|		GeneName = Os05g0463800\|