Os05g0497200 - Revision history

Xysj1980 at 08:47, 23 March 2017

2017-03-23T08:47:44Z

192.168.72.52: /* Structured Information */

2015-06-12T07:41:22Z

‎Structured Information

Jin Xiaoyang: /* References */

2014-05-31T13:30:03Z

‎References

Jin Xiaoyang at 13:17, 31 May 2014

2014-05-31T13:17:19Z

Jin Xiaoyang: /* References */

2014-05-31T13:14:31Z

‎References

Jin Xiaoyang at 13:10, 31 May 2014

2014-05-31T13:10:45Z

Jin Xiaoyang: MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice.

2014-05-31T13:09:01Z

MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice.

Greenmood: /* Evolution */

2014-05-21T07:05:41Z

‎Evolution

Greenmood: /* References */

2014-05-21T05:26:27Z

‎References

Greenmood: /* Labs working on this gene */

2014-05-21T05:23:35Z

‎Labs working on this gene

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-Please input one-sentence summary here.
+The rice '''''Os05g0497200''''' was reported as '''''OsERF#130''''' in 2006 <ref name="ref1" /> by researchers from Japan.
 ==Annotated Information==
-MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice.
+===Gene Symbol===
 ===Function===
+* Genes in the ERF family encode transcriptional regulators with a variety of functions involved in the developmental and physiological processes in plants.
-MFS1 encodes an ERF domain protein. MFS1 regulates palea development, specifies sterile lemma identity,and affects spikelet meristem determinacy.
+* It has been demonstrated that the AP2/ERF proteins have important functions in the transcriptional regulation of a variety of biological processes related to growth and development, as well as various responses to environmental stimuli.
-A rice (Oryza sativa) spikelet mutant, multi-ﬂoret spikelet1 (''mfs1'') shows pleiotropic defects in spikelet development.''Mfs1'' has delayed transformation of spikelet meristems to ﬂoral meristems, which resulted in an extra hull-like organ and an elongated rachilla.(Figure.1) In addition, the sterile lemma was homeotically converted to the rudimentary glume and the body of the palea was degenerated in mfs1. These results suggest that the MULTI-FLORET SPIKELET1 (MFS1) gene plays an important role in the regulation of spikelet meristem determinacy and ﬂoral organ identity. MFS1 also positively regulates the expression of LONG STERILE LEMMA and the INDETERMINATE SPIKELET1 (IDS1)-like genes SUPERNUMERARY BRACT and OsIDS1.MFS1 belongs to an unknown function clade in the APETALA2/ethylene-responsive factor (AP2/ERF) family. The MFS1-green ﬂuorescent protein fusion protein is localized in the nucleus.MFS1 messenger RNA is expressed in various tissues, especially in the spikelet and ﬂoral meristems.
+* Genes in the AP2 family have been shown to participate in the regulation of developmental processes, e.g. flower development (Elliott et al., 1996), spikelet meristem determinacy (Chuck et al., 1998), leaf epidermal cell identity (Moose and Sisco, 1996), and embryo development (Boutilier et al., 2002).<ref name="ref2" />
 ===Evolution===
-MFS1 Encodes an ERF Domain Protein
+You can also add sub-section(s) at will.
 ==Labs working on this gene==
-Rice Research Institute (D.R., Yu.L., F.Z., X.S., J.S., N.W., S.G., Yi.L., C.Z., Z.Y., G.H.), Chongqing Key
+* Molecular and Cellular Breeding Research Group, Institute for Biological Resources and Functions, National Institute of Advanced Industrial Science and Technology, Tsukuba, Ibaraki 305–8566, Japan (T.N., K.S., H.S.);
-Laboratory of Application and Safety Control of Genetically Modiﬁed Crops (D.R., Yu.L., F.Z., X.S., J.S., N.W.,
+* Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki 305–8672, Japan (T.N., T.F.)
 ==References==
-<ref name="ref1">Ren D, Li Y, Zhao F, et al. MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice[J]. Plant physiology, 2013, 162(2): 872-884.</ref>
+<references>
-<ref name="ref2">Sharoni A M, Nuruzzaman M, Satoh K, et al. Gene structures, classification and expression models of the AP2/EREBP transcription factor family in rice[J]. Plant and cell physiology, 2011, 52(2): 344-360.</ref>
+* <ref name="ref1">
-<ref name="ref3">Lee D Y, Lee J, Moon S, et al. The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem[J]. The Plant Journal, 2007, 49(1): 64-78.</ref>
+Nakano T, Suzuki K, Fujimura T, Shinshi H. Genome-wide analysis of the ERF
-<ref name="ref4">Lee D Y, An G. Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice[J]. The Plant Journal, 2012, 69(3): 445-461.</ref>
+gene family in Arabidopsis and rice. Plant Physiol. 2006 Feb;140(2):411-32.
-<ref name="ref5">Yoshida A, Suzaki T, Tanaka W, Hirano HY (2009) The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet. Proc Natl Acad Sci USA 106: 20103–20108 6.Hong L, Qian Q, Zhu K, Tang D, Huang Z, Gao L, Li M, Gu M, Cheng Z (2010) ELE restrains empty glumes from developing into lemmas. J Genet Genomics 37: 101–115</ref>
+PubMed PMID: 16407444; PubMed Central PMCID: PMC1361313.
-<references />
+</ref>
+* <ref name="ref2">
 ==Structured Information==

@@ Line 45: / Line 45: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]

@@ Line 37: / Line 37: @@
 ==References==
-.Ren D, Li Y, Zhao F, et al. MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice[J]. Plant physiology, 2013, 162(2): 872-884.
+<ref name="ref1">Ren D, Li Y, Zhao F, et al. MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice[J]. Plant physiology, 2013, 162(2): 872-884.</ref>
+<ref name="ref2">Sharoni A M, Nuruzzaman M, Satoh K, et al. Gene structures, classification and expression models of the AP2/EREBP transcription factor family in rice[J]. Plant and cell physiology, 2011, 52(2): 344-360.</ref>
-.Sharoni A M, Nuruzzaman M, Satoh K, et al. Gene structures, classification and expression models of the AP2/EREBP transcription factor family in rice[J]. Plant and cell physiology, 2011, 52(2): 344-360.
+<ref name="ref3">Lee D Y, Lee J, Moon S, et al. The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem[J]. The Plant Journal, 2007, 49(1): 64-78.</ref>
+<ref name="ref4">Lee D Y, An G. Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice[J]. The Plant Journal, 2012, 69(3): 445-461.</ref>
-.Lee D Y, Lee J, Moon S, et al. The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem[J]. The Plant Journal, 2007, 49(1): 64-78.
+<ref name="ref5">Yoshida A, Suzaki T, Tanaka W, Hirano HY (2009) The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet. Proc Natl Acad Sci USA 106: 20103–20108 6.Hong L, Qian Q, Zhu K, Tang D, Huang Z, Gao L, Li M, Gu M, Cheng Z (2010) ELE restrains empty glumes from developing into lemmas. J Genet Genomics 37: 101–115</ref>
+<references />
 ==Structured Information==

@@ Line 1: / Line 1: @@
 ==Annotated Information==
 ===Function===
@@ Line 34: / Line 37: @@
 ==References==
-<references>
+.Ren D, Li Y, Zhao F, et al. MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice[J]. Plant physiology, 2013, 162(2): 872-884.
-<ref name="ref1">Ren D, Li Y, Zhao F, et al. MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice[J]. Plant physiology, 2013, 162(2): 872-884.</ref>
-<ref name="ref2">Sharoni A M, Nuruzzaman M, Satoh K, et al. Gene structures, classification and expression models of the AP2/EREBP transcription factor family in rice[J]. Plant and cell physiology, 2011, 52(2): 344-360.</ref>
+.Sharoni A M, Nuruzzaman M, Satoh K, et al. Gene structures, classification and expression models of the AP2/EREBP transcription factor family in rice[J]. Plant and cell physiology, 2011, 52(2): 344-360.
-<ref name="ref3">Lee D Y, Lee J, Moon S, et al. The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem[J]. The Plant Journal, 2007, 49(1): 64-78.</ref>
-<ref name="ref4">Lee D Y, An G. Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice[J]. The Plant Journal, 2012, 69(3): 445-461.</ref>
+.Lee D Y, Lee J, Moon S, et al. The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem[J]. The Plant Journal, 2007, 49(1): 64-78.
-<ref name="ref5">Yoshida A, Suzaki T, Tanaka W, Hirano HY (2009) The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet. Proc Natl Acad Sci USA 106: 20103–20108 6.Hong L, Qian Q, Zhu K, Tang D, Huang Z, Gao L, Li M, Gu M, Cheng Z (2010) ELE restrains empty glumes from developing into lemmas. J Genet Genomics 37: 101–115</ref>
-. Ren D, Li Y, Zhao F, et al. MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice[J]. Plant physiology, 2013, 162(2): 872-884.
+.Yoshida A, Suzaki T, Tanaka W, Hirano HY (2009) The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet. Proc Natl Acad Sci USA 106: 20103–20108 6.Hong L, Qian Q, Zhu K, Tang D, Huang Z, Gao L, Li M, Gu M, Cheng Z (2010) ELE restrains empty glumes from developing into lemmas. J Genet Genomics 37: 101–115
 ==Structured Information==

@@ Line 35: / Line 35: @@
 ==References==
 <references>
 <ref name="ref1">Ren D, Li Y, Zhao F, et al. MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice[J]. Plant physiology, 2013, 162(2): 872-884.</ref>
 <ref name="ref2">Sharoni A M, Nuruzzaman M, Satoh K, et al. Gene structures, classification and expression models of the AP2/EREBP transcription factor family in rice[J]. Plant and cell physiology, 2011, 52(2): 344-360.</ref>
 <ref name="ref3">Lee D Y, Lee J, Moon S, et al. The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem[J]. The Plant Journal, 2007, 49(1): 64-78.</ref>
 <ref name="ref4">Lee D Y, An G. Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice[J]. The Plant Journal, 2012, 69(3): 445-461.</ref>
-<ref name="ref5">Yoshida A, Suzaki T, Tanaka W, Hirano HY (2009) The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet. Proc Natl Acad Sci USA 106: 20103–20108 6.Hong L, Qian Q, Zhu K, Tang D, Huang Z, Gao L, Li M, Gu M, Cheng Z (2010) ELE restrains empty glumes from developing into lemmas. J Genet Genomics 37: 101–115</ref>
+. Ren D, Li Y, Zhao F, et al. MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice[J]. Plant physiology, 2013, 162(2): 872-884.
 ==Structured Information==

← Older revision		Revision as of 13:10, 31 May 2014
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	==References==		==References==
		+	<references>
	<ref name="ref1">Ren D, Li Y, Zhao F, et al. MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice[J]. Plant physiology, 2013, 162(2): 872-884.</ref>		<ref name="ref1">Ren D, Li Y, Zhao F, et al. MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice[J]. Plant physiology, 2013, 162(2): 872-884.</ref>

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 MFS1 Encodes an ERF Domain Protein
 The AP2/ERF gene family is plant specific and includes four subfamilies: AP2, RAV, DREB, and ERF. Phylogenetic analysis showed that MFS1 and its orthologs from moss, gymnosperms, dicots, and grasses constitute an MFS1-like clade, whereas the well-known ERF domain proteins FZP and BD1 and their orthologs constitute another clade in the ERF subfamily (Fig. 3). These results suggested that MFS1-like and FZP/BD1-like genes diverged before the emergence of gymnosperms and that the MFS1-like genes differ from the well-known AP2/ERF genes. In addition, phylogenetic analysis also showed that the other known AP2 domain genes (SNB, OsIDS1, and SHAT1) have a distant evolutionary relationship with the MFS1-like and FZP/BD1-like genes.
 [[File: Phylogenetic tree of the MFS1 proteins..jpg]]
 Sequence analysis showed that all MFS1-like proteins contain a highly conserved ERF domain, located close to their N terminus. Meanwhile, a conserved C-terminal domain was identified in MFS1-like proteins from grasses and dicots, which share the DLNEPP185-190 motif. A unique site (V37) and a motif (SPWH132-135) were also identified in MFS1-like proteins from grasses .In addition, the MFS1 gene shared low sequence similarity with the known AP2/ERF genes outside the AP2/ERF domain.