Os05g0547850 - Revision history

192.168.72.52: /* Structured Information */

2015-06-12T07:43:45Z

‎Structured Information

Zhangye: /* Localization */

2015-01-19T06:53:40Z

‎Localization

Zhangye at 06:50, 19 January 2015

2015-01-19T06:50:18Z

124.16.129.48 at 20:14, 22 July 2012

2012-07-22T20:14:19Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os05g0547850| Description = DNA-binding TFAR19-related protein family protein| Version = NM_001187584.1 GI:297724298 GeneID:9269971| Length = 41..."

2012-06-24T10:32:18Z

Created page with "{{JaponicaGene| GeneName = Os05g0547850| Description = DNA-binding TFAR19-related protein family protein| Version = NM_001187584.1 GI:297724298 GeneID:9269971| Length = 41..."

New page

{{JaponicaGene|
GeneName = Os05g0547850|
Description = DNA-binding TFAR19-related protein family protein|
Version = NM_001187584.1 GI:297724298 GeneID:9269971|
Length = 4154 bp|
Definition = Oryza sativa Japonica Group Os05g0547850, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
AP = Chromosome 5:27259863..27264016|
CDS = 27260041..27260079,27260352..27260423,27260512..27260603,27261328..27261392,27261506..27261555<br>,27261644..27261709,27263916..27263918|
GCID = <gbrowseImage1>
name=NC_008398:27259863..27264016
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008398:27259863..27264016
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggctgacccagagttggaagctatcaggcagaggagaatgcaagagctaatggcacagcatggtgcggcaaatccgcaaaatgctgggcaacaaaaagctcaagaagatgcaaagcaggaagctgaggaacggcggcagatgatgcttgctcagattttatcttctgaagctagagaaaggctctcccgcatagctttggtcaaacctgataaagcaagaggggtggaggatgttcttctgagagctgctcagtccggtggaatatctgaaaaggtgtctgaagaaaggcttatctcacttctggagcaaatcaatacccacactagcaaacagacgaaagttacgattcagaggcgccggagcgtccttgacgatgatgactag</cdnaseq>|
AA = <aaseq>MADPELEAIRQRRMQELMAQHGAANPQNAGQQKAQEDAKQEAEE RRQMMLAQILSSEARERLSRIALVKPDKARGVEDVLLRAAQSGGISEKVSEERLISLL EQINTHTSKQTKVTIQRRRSVLDDDD</aaseq>|
DNA = <dnaseqindica>3938..3976#3594..3665#3414..3505#2625..2689#2462..2511#2308..2373#99..101#ggtcaagttctctctctcttcctctcgtcgccggaggcgggaggccatcgacgctgaagtgaaggggatcgcgatctccggcgagcgtgcgggggaagatggtaagatcggtggtcagatcttgaagttttggttgttggtcgttttggttgtgtggatctctgctgagttcttgcacgggtttaaatcctagggttttagagcatcacgaacagcatacgcatatcgttcccaatctcaggttttggggggattttcgttaaaaacgcattccaacagatgtatgccctgatctacaaattcccatctccgggaatttcgttctccatagctagagaatcgatttggctcccaatcgtaacatctccagctcattcgcacgcaggaggcgaaattttcgccatccagttcatcatctttgtaccctcgtcgccactgggtcgttcgttcctcagttccgccatcggctggatcgccgtcgctggtccggtgcgctgtgtcgatttgggcagccaccacgatttggtccccgtgtcggcttggtgctgaatgttgctgttgtggtgggggtgatgcttgcatggggctggggctgctgcttgcttgcttgctgccgatgatgatctgataaacatatgagaaccgctggaaactgaaatgtgctactatcgctaaactgaaaattgctttcgtgctccatgttggtgctggaactgattgctgttgttgctgcctacttggctgcttgctgctgcttggagaggagagggagtggaggaggtgggggtgcgccggatcaatctgccggcgtgtgcgtggagaggggcaacgaggagaggggcgaggcccatcggtgcggctattgggtcacaccggcgatcgcggtcgagtagctgagcttgatctcgcgggagggagggggtgaaaacaaaatttttgttagaagttcataggccccccttttagtttttaggaagttgattttagctagtcttttggaggaatgaaaattttaacaccttaaattctatttaggattcccataatcaaaattttggggataaaattttgggatgctgttggtgatgcttacaggtaacagtttgtttgttccttgaaaaggtaacagtttgttcattccccgaaaagtttgggggttcagttgaacccccatgtcccaagttggatccgcccctgttgtatgtgttgttctgttgcaacatgccaattcacattcaggagttgcatttgtggttggctccttgcttcatgtggttcatttttaaaaaatcacacatggttttacacctttttgtatgaactgtaaagtatctatctaccactactagatctcgctaccttacaacctttttctgtatttcttttgttaactccttgatgtactcatgaaaactgtccttactcctatctgagaagttgcccatactttgatttgtagttgcttgttttgaataattttcgttcactgttgcaccttatgttctcaagcacactagcttgtgatatcagcatggaatttccttcctcctggctgcagtgttttttctctgaagtggttcttatgggtcttccatgacagttccttatgttgttcttaattaattgctctagcgtcccattgtaacgtggtagggtaagagctttaggacttggtgaaataaatctactatgttttaatttcatctcccaagcagtaatatatattcacagaaaatattttttttggctctttacatataaatgataaatctctcatttatgttttacaatttaacccttctagtcttccagaaagttagaagtcccaattttctgtatagactaaacatctttttatcaaatactccctctatcccatgatataaggcgcggtcgaagttgtcatggtctccaaaactaatctttagctaataatttctcatatattattaagatttgtagcaaaaaattataaccatatgaaagtaaatttaaatctcaatctaatgatataatttttaacaaataaaattcatttcatattatactaagtgttggtcaaatgttttaaaggttgaattttgaaatgcatgcacgccttatattatgggatggagggagtacatgttttaggtgtcttgctaaatattaaatatagatacgaagattatattatgtgcactccaaatattcgtcttagacaacatttcagtttatgtaagaggaagcaatagttcaatgctatccataaaggcattgttctaccatgtaacttctcctgatggaactataaactcttattgctaggctgacccagagttggaagctatcaggcagaggagaatgcaagagctaatggcacagcatggtgcggtaagcctgtggttcatggtgaaaagttgaagctgcaacagcaatgtccagttctcttggctgactttgatgtactattgtcctttaggcaaatccgcaaaatgctgggcaacaaaaagctcaagaagatgcaaagcagtatgctctatttgtcaaccatgtttatccataatatgaaactaatctgtgttatgttatgttgtgtaaaactatgtgcagaatttcattagtttcatttaattcttaaccagggaagctgaggaacggcggcagatgatgcttgctcagattttatcttctgaagctagagaaaggcgtaagttatgttgatgtcatttttgttgaacatttgaagttatttttagatcgtttacggagttaaagtcagttttttagaggatacagccttgtaggggataatggaggtccatgtcttatgtgtttttttaccacagtgccaatgtgtcatgtactttttctcaacagcagtttagtgtatatatgcttagtgtcctatcacgatacttctgaaagcaccaaagtgattgattgagataatttaccaatgtggctatctgcaacttgaagttagggatcatccttattctcttaggaaccattttatttgtttccttgttttcaatgatgataacaaattaggaaaaatattgggatttaatccagatagaagtgtgaatgctgtttgtgctgacttggggttgccagatggtttgcaatgttgaattacagggaaatctgtgaacctccccctcgaaatagtatatgcagtaaactaacaaaattatacatcttgaattgtatttttgttgagtattggtactgtggcagtaggctggaccaaactggcaaacaattgcatggatatataatgtatagtttgcttatcagaatcaaatgttctgaataaggatgattctatgaaaaagtcataccgttaatctcacttgaggtgacacatagtattaaggtgatgaaaaggttctataataatgtatttttttactctctggagttttcagtctcccgcatagctttggtcaaacctgataaagcaagaggggtggaggatgttcttctgagagctgctcagtccggtggaatatctgaaaaggtactagaggagggtagcataatctttgctgtgtcaagagactcatatgaaggctgactttctttggggggaattttttggctttcaggtgtctgaagaaaggcttatctcacttctggagcaaatcaatacccacactagcaaacagacgaaagttacggtatgataaacatggaaacttctatcagtttttgacgtaccatgtgcacataactaaactatcctaccgtgcttccaacagtggttttgggtagcttcactacaactaatttagtttggtttgtaaggattctcgtatgttgtgattctttccaagtcactgattgtacatcatcaaaaaaaggaagagaaaatgatgctaatataggctagtctgtgaagggaaagtatccaatacacaactgattctttttactacgttttatttcacagattcagaggcgccggagcgtccttgacgatgatgactagctgcatgtgtgttgtgtgtacgatgagctggtggaggagtctgctgtagcgcaaaactacttagaaatgatgattatcaaacgctatatcaacaaccatcaaaacttgagcgactatttgatggatatttggccgtatatgaattaattcgagtttggtttggcttgttccattgatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001187584.1 RefSeq:Os05g0547850]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 5]]
[[Category:Chromosome 5]]

@@ Line 43: / Line 43: @@
 ===Localization===
-OsPDCD5 was predominantly localized to the tapetal layer<ref name="ref3"/>.
+OsPDCD5 was predominantly localized to the '''tapetal layer'''<ref name="ref3"/>.
 ===Evolution===

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+'''''Oryza sativa programmed cell death 5 (OsPDCD5)''''' gene is concerned with '''Programmed cell death (PCD)'''<ref name="ref1"/><ref name="ref2"/><ref name="ref3"/><ref name="ref4"/><ref name="ref5"/>.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+*''OsPDCD5'' plays an essential role in the regulation of '''''PCD''''' in rice plants. Programmed cell death was accompanied by '''typical features''', '''including''' inhibition of developmental growth, a reduction of fresh weight, degradation of total protein content, and fragmentation of genomic DNA<ref name="ref1"/>.
 ===Expression===
-Please input expression information here.
+*The antisense-OsPDCD5 '''expressed''' in various '''tissues''' of transgenic rice, such as leaf primordium surrounding the shoot apical meristem, young leaves and young anthers, including pollen and anther wall cells<ref name="ref2"/>.
 ===Evolution===
-Please input evolution information here.
+*The deduced amino acid sequence of OsPDCD5 was '''conserved in''' several different species, including ''Arabidopsis thaliana'' (Accession No. NP564336), Homo sapiens (Accession No. AAP36696) and mice (Accession No. NP062720). '''Alignment''' of the amino acid sequences of rice programmed cell death 5 gene (OsPDCD5) of rice (''Oryza sativa'')(Os) with putative apoptosis-related protein 19 of Arabidopsis (At; '''64% identity'''), Homo sapiens (Hs; '''39% identity''') and Mouse (M; '''39% identity''').<ref name="ref1"/>.
-You can also add sub-section(s) at will.
+===Knowledge Extension===
 ==Labs working on this gene==
-Please input related labs here.
+*State Key Laboratory of Genetic Engineering, Institute of Genetics, School of Life Sciences, Fudan University, 220 Handan Road, Shanghai 200433, China
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==

← Older revision		Revision as of 20:14, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os05g0547850\|		GeneName = Os05g0547850\|

@@ Line 89: / Line 89: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]