Os06g0107700 - Revision history

Xysj1988 at 08:43, 2 July 2016

2016-07-02T08:43:05Z

Xysj1988 at 08:42, 2 July 2016

2016-07-02T08:42:39Z

Xysj2012: /* References */

2016-06-30T07:57:37Z

‎References

Liman at 01:33, 6 June 2016

2016-06-06T01:33:47Z

Liman: /* Mutation */

2016-06-06T01:30:22Z

‎Mutation

Liman at 01:26, 6 June 2016

2016-06-06T01:26:41Z

Liman at 01:25, 6 June 2016

2016-06-06T01:25:32Z

192.168.72.52 at 08:44, 14 May 2015

2015-05-14T08:44:08Z

124.16.129.48 at 20:16, 22 July 2012

2012-07-22T20:16:24Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os06g0107700| Description = Ferredoxin--NADP reductase, leaf isozyme, chloroplast precursor (EC 1.18.1.2) (FNR)| Version = NM_001063105.1 GI:1154..."

2012-06-24T08:59:53Z

Created page with "{{JaponicaGene| GeneName = Os06g0107700| Description = Ferredoxin--NADP reductase, leaf isozyme, chloroplast precursor (EC 1.18.1.2) (FNR)| Version = NM_001063105.1 GI:1154..."

New page

{{JaponicaGene|
GeneName = Os06g0107700|
Description = Ferredoxin--NADP reductase, leaf isozyme, chloroplast precursor (EC 1.18.1.2) (FNR)|
Version = NM_001063105.1 GI:115465941 GeneID:4339874|
Length = 2384 bp|
Definition = Oryza sativa Japonica Group Os06g0107700, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
AP = Chromosome 6:478208..480591|
CDS = 478424..478491,478587..478821,478916..478978,479102..479179,479263..479354<br>,479788..479866,479971..480104,480184..480523|
GCID = <gbrowseImage1>
name=NC_008399:478208..480591
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008399:478208..480591
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggccgccgtcacggctgcggccgtctccacctccgccgctgctgcagtcaccaaggcatcgccgtcccccgcccactgcttcctgccatgcccgccaagaaccagagccgcccaccagcgcggcctgctgctgcgcgcgcaggtgtccaccaccgacgccgccgccgtcgccgccgcgccggccaagaaggagaagatatccaagaagcatgacgagggcgtcgtcaccaacaagtacaggcccaaggagccctacgtcggcaagtgcctcctcaacaccaagatcaccgccgacgacgcgcccggcgagacatggcacatggtcttcagcaccgagggtgagatcccctacagagaggggcagtccatcggcgtcatcgccgacggcgtcgacaagaacggcaagccgcacaagctcaggctctactccatcgccagcagcgctctcggcgacttcggcgactccaagaccgtttcactctgcgtcaagaggctcgtttacaccaacgaccagggagagattgtcaaaggagtctgctccaacttcctctgtgacttgaagcctggttctgatgtcaagataaccggaccagtaggcaaagaaatgctcatgcccaaagatcccaatgctaatattataatgcttgcgaccggtactggtattgccccgttccgctcattcttgtggaaaatgttttttgagaagtatgatgactacaagttcaatggtctggcttggctcttcttgggagtcccaactagcagttctttactctacaaggaggagtttgacaaaatgaaggcgaaagcgccagagaacttccgggtcgattatgctgtgagcagggagcagaccaatgctcaaggagagaagatgtacattcagaccaggatggcagagtacaaggaagagctgtgggagctcctgaagaaggaccacacctatgtgtacatgtgtggactgaaaggcatggagaagggtattgatgacattatggtgtcattggctgcaaaagatggaatcgactgggctgattacaagaagcaactgaagaagggcgagcaatggaacgtggaagtctactaa</cdnaseq>|
AA = <aaseq>MAAVTAAAVSTSAAAAVTKASPSPAHCFLPCPPRTRAAHQRGLL LRAQVSTTDAAAVAAAPAKKEKISKKHDEGVVTNKYRPKEPYVGKCLLNTKITADDAP GETWHMVFSTEGEIPYREGQSIGVIADGVDKNGKPHKLRLYSIASSALGDFGDSKTVS LCVKRLVYTNDQGEIVKGVCSNFLCDLKPGSDVKITGPVGKEMLMPKDPNANIIMLAT GTGIAPFRSFLWKMFFEKYDDYKFNGLAWLFLGVPTSSSLLYKEEFDKMKAKAPENFR VDYAVSREQTNAQGEKMYIQTRMAEYKEELWELLKKDHTYVYMCGLKGMEKGIDDIMV SLAAKDGIDWADYKKQLKKGEQWNVEVY</aaseq>|
DNA = <dnaseqindica>2101..2168#1771..2005#1614..1676#1413..1490#1238..1329#726..804#488..621#69..408#cctcctcctcacacctgcacacacttgcacacttgcacccaccctctctcctccatccagcaccgaccatggccgccgtcacggctgcggccgtctccacctccgccgctgctgcagtcaccaaggcatcgccgtcccccgcccactgcttcctgccatgcccgccaagaaccagagccgcccaccagcgcggcctgctgctgcgcgcgcaggtgtccaccaccgacgccgccgccgtcgccgccgcgccggccaagaaggagaagatatccaagaagcatgacgagggcgtcgtcaccaacaagtacaggcccaaggagccctacgtcggcaagtgcctcctcaacaccaagatcaccgccgacgacgcgcccggcgagacatggcacatggtcttcagcaccgagggtctgtaactcatcatccatcctatccaatccaatccaatccaatccaatccttgattactcactactcaggattgcaggtgagatcccctacagagaggggcagtccatcggcgtcatcgccgacggcgtcgacaagaacggcaagccgcacaagctcaggctctactccatcgccagcagcgctctcggcgacttcggcgactccaagaccgtcagtccccctcttctcttctcctccttattcaatctcattccttctcatcggatcgatctcctttcttcacaccagataatcatcttcacttgtacctctaggtttcactctgcgtcaagaggctcgtttacaccaacgaccagggagagattgtcaaaggagtctgctccaacttcctctgtgagttcgtctgcattcttctcatgatgatcacaattgcattctgaattttactgcattagtttgcattcagctcttctcaagacggtattcagagtactgcattctgctgtcctgatcaacaaatagtttcacacagtatatattcagagtactgcgctttgctgctgctctgaacctgaatactaacatattaatttgttacagatttcagagattcagtttaagtcttacatatctcaatctgctagtttttttcccactgaaaacaacatgctgctagctctaatcttgaataatcaatatgatccatcaaattatatttgattcaacatgtaacctgcatataatgattctccattcaataagtttatgtctcacatctactttttgcggggtcatgtctcacatctacttcaccttgctaatataggtgacttgaagcctggttctgatgtcaagataaccggaccagtaggcaaagaaatgctcatgcccaaagatcccaatgctaatattataatggtgagcttaaattgcatggtgaattgatccatctcaaaaaatctacaccacaacaaattttaaccttgtgcggttacttgcagcttgcgaccggtactggtattgccccgttccgctcattcttgtggaaaatgttttttgagaagtatgatgactacaaggtaccaatgttgcatcattagttttcagactttatgcttgtttcaaaatcttaaaattcatactttatttctccaaatgatttttttctttgttttaaacaatatgtgtgaactcttgtgcagttcaatggtctggcttggctcttcttgggagtcccaactagcagttctttactctacaaggaggtcagcttatacatacatctctgcaagtgctactgctacttttgtgtgctactgaaattcctcacttgcactgtatgtatttgttaaaattcaggagtttgacaaaatgaaggcgaaagcgccagagaacttccgggtcgattatgctgtgagcagggagcagaccaatgctcaaggagagaagatgtacattcagaccaggatggcagagtacaaggaagagctgtgggagctcctgaagaaggaccacacctatgtgtacatgtgtggactgaaaggcatggagaagggtattgatgacattatggtgtcattggctgcaaaagatggtatatatgcttctgaaccttacctttttgcatggataatttaagaatctgagtaattcttttgcatgctaaattttgcatggtatcgttgttaggaatcgactgggctgattacaagaagcaactgaagaagggcgagcaatggaacgtggaagtctactaattcttccaattttcctcacatctgtttcttttttttcttccatttgtatctgtgtgcacatctgtgcctgtgatcactctataatgttagataggcgtatatatatactgtttgtcatgttggttaaattcaagcttcatataagaattactacttatgtctgatccaaatactactatggtcaagtcaagagtaataataataataatgcaatgc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063105.1 RefSeq:Os06g0107700]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 6]]
[[Category:Chromosome 6]]

@@ Line 26: / Line 26: @@
 * An alignment of '''''LFNR1''''' and '''''LFNR2''''' in rice and Arabidopsis is shown in Figure 3. Both in rice and Arabidopsis, '''''LFNR1''''' and '''''LFNR2''''' show high sequence identity at the amino acid level (80% identity between '''''AtLFNR1''''' and '''''AtLFNR2''''', 80% identity between '''''OsLFNR1''''' and '''''OsLFNR2''''') except for the N-terminal amino acids, corresponding to the chloroplast transit peptide signal sequences. The identity between rice and Arabidopsis is also high in LFNR1 and LFNR2 (80% identity between AtLFNR1 and '''''OsLFNR1''''', 82% identity between '''''AtLFNR2''''' and '''''OsLFNR2'''''). Several isoform-specific amino acids were seen as shown in the gray boxes<ref name="ref1" />.
-[[File:LFNR-alignment.png|right|thumb|327px|'''Figure 3.''' '' Amino acid sequence alignment of LFNR proteins in rice and
+[[File:LFNR-alignment.png|right|thumb|300px|'''Figure 3.''' '' Amino acid sequence alignment of LFNR proteins in rice and
 Arabidopsis<ref name="ref1" />.'']]

@@ Line 26: / Line 26: @@
 * An alignment of '''''LFNR1''''' and '''''LFNR2''''' in rice and Arabidopsis is shown in Figure 3. Both in rice and Arabidopsis, '''''LFNR1''''' and '''''LFNR2''''' show high sequence identity at the amino acid level (80% identity between '''''AtLFNR1''''' and '''''AtLFNR2''''', 80% identity between '''''OsLFNR1''''' and '''''OsLFNR2''''') except for the N-terminal amino acids, corresponding to the chloroplast transit peptide signal sequences. The identity between rice and Arabidopsis is also high in LFNR1 and LFNR2 (80% identity between AtLFNR1 and '''''OsLFNR1''''', 82% identity between '''''AtLFNR2''''' and '''''OsLFNR2'''''). Several isoform-specific amino acids were seen as shown in the gray boxes<ref name="ref1" />.
-[[File:LFNR-alignment.png|center|thumb|400px|'''Figure 3.''' '' Amino acid sequence alignment of LFNR proteins in rice and
+[[File:LFNR-alignment.png|right|thumb|327px|'''Figure 3.''' '' Amino acid sequence alignment of LFNR proteins in rice and
 Arabidopsis<ref name="ref1" />.'']]

@@ Line 49: / Line 49: @@
 Hanke GT, Okutani S, Satomi Y, Takao T, Suzuki A, Hase T (2005) Multiple iso-proteins of FNR in Arabidopsis: evidence for different contributions to chloroplast function and nitrogen assimilation. Plant Cell Environ 28: 1146–1157
 </ref>
 </references>
 [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]

@@ Line 49: / Line 49: @@
 Hanke GT, Okutani S, Satomi Y, Takao T, Suzuki A, Hase T (2005) Multiple iso-proteins of FNR in Arabidopsis: evidence for different contributions to chloroplast function and nitrogen assimilation. Plant Cell Environ 28: 1146–1157
 </ref>
 </references>
 [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]

@@ Line 6: / Line 6: @@
 ===Mutation===
-[[File:LFNR-1.png|right|thumb|400px|'''Figure 1.''' ''Isolation of rice FOX Arabidopsis lines with altered chlorophyll
+[[File:LFNR-1.png|right|thumb|300px|'''Figure 1.''' ''Isolation of rice FOX Arabidopsis lines with altered chlorophyll
 fluorescence. A, The left panel shows Arabidopsis wild-type (WT) and T2 seedlings of K17234. The right panel shows a pseudocolor image of the NPQ. B, Plants of the wild type and the T2 generation of K17234 in the adult stage.<ref name="ref1" />.'']]
 * '''''OsLFNR2''''' expressed in Arabidopsis.
 # Scientists isolated the rice FOX(for fulllength cDNA overexpressor) Arabidopsismutants K17234 with altered chlorophyll fluorescence kinetics. The phenotypes of  K17234 was apparently caused by expression of the rice '''''LFNR2''''' gene. K17234 showed a pale green phenotype and that this phenotype was caused by the expression of '''''OsLFNR2'''''. Figure 1A shows the seedling plants and false-color images of nonphotochemical quenching (NPQ) in K17234. The false colors show the minimum NPQ in blue and the maximum in red. The NPQs K17234 were lower than in the wild type. K17234 exhibited pale green leaves at the seedling stage. As shown in Figure 1B, K17234 also exhibited growth defects and had paler green leaves in adult plants compared with the wild type. Chlorophyll content (μg chlorophyll mg-1 fresh weight) was lower in K17234 (0.97 ± 0.17) than in the wild type (1.73 ± 0.15). Concomitantly, a higher chlorophyll a/b ratio was observed in K17234 (3.39 ± 0.17) than in the wild type (3.13 ± 0.06). In K17234, endogenous expression of '''''AtLFNR1''''' and '''''AtLFNR2''''' might be affected by heterologous expression of the '''''OsLFNR '''''genes. The levels of AtLFNR1 and '''''AtLFNR2''''' in K17234 decreased to 10% and 30% of those of the wild type, respectively. The results indicate that heterologous expression of '''''OsLFNR''''' fl-cDNAs results in a decreased level of AtLFNR mRNA in Arabidopsis<ref name="ref1" />.
-[[File:LFNR-2.png|right|thumb|400px|'''Figure 2.''' ''Characterization of rice overexpression plants of OsLFNR2 <ref name="ref1" />.'']]
+[[File:LFNR-2.png|right|thumb|300px|'''Figure 2.''' ''Characterization of rice overexpression plants of OsLFNR2 <ref name="ref1" />.'']]
 * Overexpression of '''''OsLFNR2''''' Genes in Rice
 # Scientists observed 13 T0 transgenic plants of '''''OsLFNR2''''' ('''''OsLFNR2'''''-overexpression in rice) and found that two of them were sterile, and six plants showed a pale green phenotype. Rice T1 plants of OsLFNR2OE showed growth defects (Fig. 2A) when they were grown in soil<ref name="ref1" />.

← Older revision		Revision as of 01:26, 6 June 2016
Line 1:		Line 1:
		+	==Annotated Information==
		+	===Function===
		+	* The stoichiometry of two '''''LFNR''''' isoforms('''''OsLFNR1''''' and '''''OsLFNR2''''') plays an important role in electron partitioning between carbon fixation and nitrogen assimilation.
		+	* Electrons might be transferred preferentially from Fd to the nitrogen assimilation pathway when '''''OsLFNR2''''' accounts for a larger portion of the total '''''LFNR'''''<ref name="ref1" />.
		+	* '''''OsLFNR2''''' expression leads to the impairment of photosynthetic linear electron transport as well as Fd-dependent cyclic electron flow around photosystem I<ref name="ref1" />.
		+
		+	===Mutation===
		+	[[File:LFNR-1.png\|right\|thumb\|400px\|'''Figure 1.''' ''Isolation of rice FOX Arabidopsis lines with altered chlorophyll
		+	fluorescence. A, The left panel shows Arabidopsis wild-type (WT) and T2 seedlings of K17234. The right panel shows a pseudocolor image of the NPQ. B, Plants of the wild type and the T2 generation of K17234 in the adult stage.<ref name="ref1" />.'']]
		+	* '''''OsLFNR2''''' expressed in Arabidopsis.
		+	# Scientists isolated the rice FOX(for fulllength cDNA overexpressor) Arabidopsismutants K17234 with altered chlorophyll fluorescence kinetics. The phenotypes of K17234 was apparently caused by expression of the rice '''''LFNR2''''' gene. K17234 showed a pale green phenotype and that this phenotype was caused by the expression of '''''OsLFNR2'''''. Figure 1A shows the seedling plants and false-color images of nonphotochemical quenching (NPQ) in K17234. The false colors show the minimum NPQ in blue and the maximum in red. The NPQs K17234 were lower than in the wild type. K17234 exhibited pale green leaves at the seedling stage. As shown in Figure 1B, K17234 also exhibited growth defects and had paler green leaves in adult plants compared with the wild type. Chlorophyll content (μg chlorophyll mg-1 fresh weight) was lower in K17234 (0.97 ± 0.17) than in the wild type (1.73 ± 0.15). Concomitantly, a higher chlorophyll a/b ratio was observed in K17234 (3.39 ± 0.17) than in the wild type (3.13 ± 0.06). In K17234, endogenous expression of '''''AtLFNR1''''' and '''''AtLFNR2''''' might be affected by heterologous expression of the '''''OsLFNR '''''genes. The levels of AtLFNR1 and '''''AtLFNR2''''' in K17234 decreased to 10% and 30% of those of the wild type, respectively. The results indicate that heterologous expression of '''''OsLFNR''''' fl-cDNAs results in a decreased level of AtLFNR mRNA in Arabidopsis<ref name="ref1" />.
		+
		+	[[File:LFNR-2.png\|right\|thumb\|400px\|'''Figure 2.''' ''Characterization of rice overexpression plants of OsLFNR2 <ref name="ref1" />.'']]
		+	* Overexpression of '''''OsLFNR2''''' Genes in Rice
		+	# Scientists observed 13 T0 transgenic plants of '''''OsLFNR2''''' ('''''OsLFNR2'''''-overexpression in rice) and found that two of them were sterile, and six plants showed a pale green phenotype. Rice T1 plants of OsLFNR2OE showed growth defects (Fig. 2A) when they were grown in soil<ref name="ref1" />.
		+	# Chlorophyll content (μg chlorophyll mg-1 fresh weight), when compared with that of the wild type (4.54 ± 0.62), was low in OsLFNR2OE (2.25 ± 0.47). The ratio of chlorophyll a/b was slightly higher in OsLFNR2OE (3.83 ± 0.18) than in the wild type (3.52 ± 0.12)<ref name="ref1" />.
		+	# Quantitative real-time RT-PCR analysis suggests that overexpression of '''''OsLFNR2''''' gene causes the down-regulation of the endogenous LFNR1 in rice as observed in the rice FOX Arabidopsis lines(K17234)<ref name="ref1" />.
		+	# Proteins levels of OsLFNR1 and OsLFNR2 were determined by western blotting using the FNR antibody(Fig. 2D). Apparently, OsLFNR2OE accumulates more '''''OsLFNR2''''' and less '''''OsLFNR1''''' compared with the wild type<ref name="ref1" />.
		+	# The gene expression profiles of OsLFNR2OE was investigated by microarray analysis. Many genes encoding nucleus-encoded PSI subunits were down-regulated, and the expression of genes encoding PSII subunits also decreased in OsLFNR2OE. Genes other than those encoding the subunits of the photosystems were also down-regulated, such as genes encoding light-harvesting proteins, chlorophyll biosynthesis-related genes, the Rubisco small subunit, and thylakoid ascorbate peroxidase<ref name="ref1" />.
		+
		+	* '''''OsLFNR2'''''-Expressing Arabidopsis and rice were impaired in linear electron transport and Fd-dependent cyclic electron flow around PSI<ref name="ref1" />.
		+
		+	===Expression Pattern===
		+	===Subcellular localization===
		+	===Alignment===
		+	* An alignment of '''''LFNR1''''' and '''''LFNR2''''' in rice and Arabidopsis is shown in Figure 3. Both in rice and Arabidopsis, '''''LFNR1''''' and '''''LFNR2''''' show high sequence identity at the amino acid level (80% identity between '''''AtLFNR1''''' and '''''AtLFNR2''''', 80% identity between '''''OsLFNR1''''' and '''''OsLFNR2''''') except for the N-terminal amino acids, corresponding to the chloroplast transit peptide signal sequences. The identity between rice and Arabidopsis is also high in LFNR1 and LFNR2 (80% identity between AtLFNR1 and '''''OsLFNR1''''', 82% identity between '''''AtLFNR2''''' and '''''OsLFNR2'''''). Several isoform-specific amino acids were seen as shown in the gray boxes<ref name="ref1" />.
		+
		+	[[File:LFNR-alignment.png\|center\|thumb\|400px\|'''Figure 3.''' '' Amino acid sequence alignment of LFNR proteins in rice and
		+	Arabidopsis<ref name="ref1" />.'']]
		+
		+	===Knowledge Extension===
		+	* During photosynthesis, light energy is converted to chemical energy (in the form of ATP) through electron transport, and NADPH, a reducing agent, is also produced. In the final step of the linear electron transport of photosynthesis, ferredoxin NADP+-oxidoreductase ('''''FNR''''') catalyzes the reduction of NADP+ by ferredoxin (Fd) and provides the reducing power for CO2 fixation in the Calvin cycle. '''''FNR''''' is supposed to be one of the limiting factors in photosynthetic electron transport. Through the analysis of FNR antisense tobacco (Nicotiana tabacum) plants, the amount of FNR has been shown to correlate with photosynthetic activity.
		+	* '''''FNR''''' exists in a leaf form ('''''LFNR''''') and a root form <ref name="ref2" />. There are two '''''LFNR''''' proteins ('''''LFNR1 ''''' and '''''LFNR2''''') in the Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa) genomes. The overexpression of the '''''OsLFNR1''''' and '''''OsLFNR2''''' full-length cDNAs resulted in distinct phenotypes despite the high sequence similarity between them<ref name="ref1" />.
		+
		+	==Labs working on this gene==
		+	* Plant Functional Genomics Research Group, RIKEN, Tsurumi-ku, Yokohama, Kanagawa 230–0045, Japan(M.H.-T., K.M., Y.H., M.K., M. Matsui)
		+	* Technology Center, Okinawa Institute of Science and Technology Promotion Corporation, Onna-son, Kunigami-gun, Okinawa 904–0412, Japan (T.I.);
		+	* Department of Applied Material and Life Science, Faculty of Engineering, Kanto Gakuin University, Kanazawa-ku, Yokohama, Kanagawa 236–8501, Japan (Y.K.);
		+	* Faculty of Education and Integrated Arts and Sciences, Waseda University, Shinjuku, Tokyo 162–8480, Japan (K.S.)
		+	* National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan (M. Mori, H.H.)
		+
		+	==References==
		+	<references>
		+	* <ref name="ref1">
		+	Higuchi-Takeuchi M, Ichikawa T, Kondou Y, Matsui K, Hasegawa Y, Kawashima M, Sonoike K, Mori M, Hirochika H, Matsui M. Functional analysis of two isoforms of leaf-type ferredoxin-NADP(+)-oxidoreductase in rice using the heterologous expression system of Arabidopsis. Plant Physiol. 2011 Sep;157(1):96-108. doi: 10.1104/pp.111.181248. Epub 2011 Jul 6. PubMed PMID: 21734114; PubMed Central PMCID: PMC3165901.
		+	</ref>
		+
		+	* <ref name="ref2">
		+	Hanke GT, Okutani S, Satomi Y, Takao T, Suzuki A, Hase T (2005) Multiple iso-proteins of FNR in Arabidopsis: evidence for different contributions to chloroplast function and nitrogen assimilation. Plant Cell Environ 28: 1146–1157
		+	</ref>
		+	* <ref name="ref3">
		+
		+	</ref>
		+	</references>


	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]		[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]

← Older revision		Revision as of 01:25, 6 June 2016
Line 1:		Line 1:
−	~~Please input one-sentence summary here.~~

−	~~==Annotated Information==~~
−	~~===Function===~~
−	~~Please input function information here.~~

−	~~===Expression===~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]
−	~~Please input expression information here.~~
−
−	~~===Evolution===~~
−	~~Please input evolution information here.~~
−
−	~~You can also add sub-section(s) at will.~~
−
−	~~==Labs working on this gene==~~
−	~~Please input related labs here.~~
−
−	~~==References==~~
−	~~Please input cited references here.~~
−
−	~~==Structured Information==~~
−	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]

← Older revision		Revision as of 08:44, 14 May 2015
Line 20:		Line 20:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]
−	~~GeneName = Os06g0107700\|~~
−	~~Description = Ferredoxin--NADP reductase, leaf isozyme, chloroplast precursor (EC 1.18.1.2) (FNR)\|~~
−	~~Version = NM_001063105.1 GI:115465941 GeneID:4339874\|~~
−	~~Length = 2384 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os06g0107700, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 6\|Chromosome 6]]\|~~
−	~~AP = Chromosome 6:478208..480591\|~~
−	~~CDS = 478424..478491,478587..478821,478916..478978,479102..479179,479263..479354<br>,479788..479866,479971..480104,480184..480523\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008399:478208..480591~~
−	~~source=RiceChromosome06~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008399:478208..480591~~
−	~~source=RiceChromosome06~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atggccgccgtcacggctgcggccgtctccacctccgccgctgctgcagtcaccaaggcatcgccgtcccccgcccactgcttcctgccatgcccgccaagaaccagagccgcccaccagcgcggcctgctgctgcgcgcgcaggtgtccaccaccgacgccgccgccgtcgccgccgcgccggccaagaaggagaagatatccaagaagcatgacgagggcgtcgtcaccaacaagtacaggcccaaggagccctacgtcggcaagtgcctcctcaacaccaagatcaccgccgacgacgcgcccggcgagacatggcacatggtcttcagcaccgagggtgagatcccctacagagaggggcagtccatcggcgtcatcgccgacggcgtcgacaagaacggcaagccgcacaagctcaggctctactccatcgccagcagcgctctcggcgacttcggcgactccaagaccgtttcactctgcgtcaagaggctcgtttacaccaacgaccagggagagattgtcaaaggagtctgctccaacttcctctgtgacttgaagcctggttctgatgtcaagataaccggaccagtaggcaaagaaatgctcatgcccaaagatcccaatgctaatattataatgcttgcgaccggtactggtattgccccgttccgctcattcttgtggaaaatgttttttgagaagtatgatgactacaagttcaatggtctggcttggctcttcttgggagtcccaactagcagttctttactctacaaggaggagtttgacaaaatgaaggcgaaagcgccagagaacttccgggtcgattatgctgtgagcagggagcagaccaatgctcaaggagagaagatgtacattcagaccaggatggcagagtacaaggaagagctgtgggagctcctgaagaaggaccacacctatgtgtacatgtgtggactgaaaggcatggagaagggtattgatgacattatggtgtcattggctgcaaaagatggaatcgactgggctgattacaagaagcaactgaagaagggcgagcaatggaacgtggaagtctactaa</cdnaseq>\|
−	AA = <aaseq>MAAVTAAAVSTSAAAAVTKASPSPAHCFLPCPPRTRAAHQRGLL LRAQVSTTDAAAVAAAPAKKEKISKKHDEGVVTNKYRPKEPYVGKCLLNTKITADDAP GETWHMVFSTEGEIPYREGQSIGVIADGVDKNGKPHKLRLYSIASSALGDFGDSKTVS LCVKRLVYTNDQGEIVKGVCSNFLCDLKPGSDVKITGPVGKEMLMPKDPNANIIMLAT GTGIAPFRSFLWKMFFEKYDDYKFNGLAWLFLGVPTSSSLLYKEEFDKMKAKAPENFR VDYAVSREQTNAQGEKMYIQTRMAEYKEELWELLKKDHTYVYMCGLKGMEKGIDDIMV SLAAKDGIDWADYKKQLKKGEQWNVEVY</aaseq>\|
−	DNA = <dnaseqindica>2101..2168#1771..2005#1614..1676#1413..1490#1238..1329#726..804#488..621#69..408#cctcctcctcacacctgcacacacttgcacacttgcacccaccctctctcctccatccagcaccgaccatggccgccgtcacggctgcggccgtctccacctccgccgctgctgcagtcaccaaggcatcgccgtcccccgcccactgcttcctgccatgcccgccaagaaccagagccgcccaccagcgcggcctgctgctgcgcgcgcaggtgtccaccaccgacgccgccgccgtcgccgccgcgccggccaagaaggagaagatatccaagaagcatgacgagggcgtcgtcaccaacaagtacaggcccaaggagccctacgtcggcaagtgcctcctcaacaccaagatcaccgccgacgacgcgcccggcgagacatggcacatggtcttcagcaccgagggtctgtaactcatcatccatcctatccaatccaatccaatccaatccaatccttgattactcactactcaggattgcaggtgagatcccctacagagaggggcagtccatcggcgtcatcgccgacggcgtcgacaagaacggcaagccgcacaagctcaggctctactccatcgccagcagcgctctcggcgacttcggcgactccaagaccgtcagtccccctcttctcttctcctccttattcaatctcattccttctcatcggatcgatctcctttcttcacaccagataatcatcttcacttgtacctctaggtttcactctgcgtcaagaggctcgtttacaccaacgaccagggagagattgtcaaaggagtctgctccaacttcctctgtgagttcgtctgcattcttctcatgatgatcacaattgcattctgaattttactgcattagtttgcattcagctcttctcaagacggtattcagagtactgcattctgctgtcctgatcaacaaatagtttcacacagtatatattcagagtactgcgctttgctgctgctctgaacctgaatactaacatattaatttgttacagatttcagagattcagtttaagtcttacatatctcaatctgctagtttttttcccactgaaaacaacatgctgctagctctaatcttgaataatcaatatgatccatcaaattatatttgattcaacatgtaacctgcatataatgattctccattcaataagtttatgtctcacatctactttttgcggggtcatgtctcacatctacttcaccttgctaatataggtgacttgaagcctggttctgatgtcaagataaccggaccagtaggcaaagaaatgctcatgcccaaagatcccaatgctaatattataatggtgagcttaaattgcatggtgaattgatccatctcaaaaaatctacaccacaacaaattttaaccttgtgcggttacttgcagcttgcgaccggtactggtattgccccgttccgctcattcttgtggaaaatgttttttgagaagtatgatgactacaaggtaccaatgttgcatcattagttttcagactttatgcttgtttcaaaatcttaaaattcatactttatttctccaaatgatttttttctttgttttaaacaatatgtgtgaactcttgtgcagttcaatggtctggcttggctcttcttgggagtcccaactagcagttctttactctacaaggaggtcagcttatacatacatctctgcaagtgctactgctacttttgtgtgctactgaaattcctcacttgcactgtatgtatttgttaaaattcaggagtttgacaaaatgaaggcgaaagcgccagagaacttccgggtcgattatgctgtgagcagggagcagaccaatgctcaaggagagaagatgtacattcagaccaggatggcagagtacaaggaagagctgtgggagctcctgaagaaggaccacacctatgtgtacatgtgtggactgaaaggcatggagaagggtattgatgacattatggtgtcattggctgcaaaagatggtatatatgcttctgaaccttacctttttgcatggataatttaagaatctgagtaattcttttgcatgctaaattttgcatggtatcgttgttaggaatcgactgggctgattacaagaagcaactgaagaagggcgagcaatggaacgtggaagtctactaattcttccaattttcctcacatctgtttcttttttttcttccatttgtatctgtgtgcacatctgtgcctgtgatcactctataatgttagataggcgtatatatatactgtttgtcatgttggttaaattcaagcttcatataagaattactacttatgtctgatccaaatactactatggtcaagtcaagagtaataataataataatgcaatgc</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063105.1 RefSeq:Os06g0107700]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 6]]~~
−	~~[[Category:~~Chromosome 6]]

← Older revision		Revision as of 20:16, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os06g0107700\|		GeneName = Os06g0107700\|