Os06g0245600 - Revision history

Chenxi Sang at 11:29, 22 October 2016

2016-10-22T11:29:33Z

Chenxi Sang: /* Evolution */

2016-10-22T11:27:18Z

‎Evolution

Chenxi Sang at 11:18, 22 October 2016

2016-10-22T11:18:02Z

192.168.72.52 at 08:51, 14 May 2015

2015-05-14T08:51:36Z

124.16.129.48 at 20:20, 22 July 2012

2012-07-22T20:20:39Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os06g0245600| Description = ab initio prediction with EST support| Version = NM_001063811.1 GI:115467353 GeneID:4340635| Length = 2784 bp| Defi..."

2012-06-24T09:12:27Z

Created page with "{{JaponicaGene| GeneName = Os06g0245600| Description = ab initio prediction with EST support| Version = NM_001063811.1 GI:115467353 GeneID:4340635| Length = 2784 bp| Defi..."

New page

{{JaponicaGene|
GeneName = Os06g0245600|
Description = ab initio prediction with EST support|
Version = NM_001063811.1 GI:115467353 GeneID:4340635|
Length = 2784 bp|
Definition = Oryza sativa Japonica Group Os06g0245600, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
AP = Chromosome 6:7554464..7557247|
CDS = 7554464..7554645,7555188..7555316,7555387..7555420,7555531..7555763,7556710..7556771<br>,7556888..7556945,7557040..7557106,7557200..7557247|
GCID = <gbrowseImage1>
name=NC_008399:7554464..7557247
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008399:7554464..7557247
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggagcagctcaacgccaagctctaccacaggtacaccgccctcaagaagcggaagctgctcgacgaggggctggaccagaagcgggctgccgacatcaacgagctccgccaagccatgaaagattgggtggccgagctccagagcgagaacgagcgcctcgttgccaagctgacccaaaaggagcagcagcttgtggaggcacagacgcttttacttgatgagactcggaagacaaaggagctcaatagtgaaatattgaaacttcagtgtctcctggctgagaagaatgatgcaaaccatattgcgacagggtctcctgacacaaccgccgaaatgactatagaaaatcaaactccaatttcacctgcaaagaagacgccaaagtcaaacagcagggagagaaatattcgctccattgaaaaagcgattgttcctcgtaatggctttcaggaggaaggaagagatcttgattcctgtagaagacatatgagcatctcagggagtgcgacagaagaaagttccagtacctgtatgtttcatctgctggctgaatcaatggttgggatgaaattttcagtgaagaacgaaacagaaggattttcactttcagtctcccatgaagctagtggttacaacttcactctcacatgggtagaccaacctggtggcagtgaatggtcatatcagtactcctcgttgggcaccctggacaggatagctatgggctggatgaaggaggacataaaattcagctcgaccatgtgtcctgtattcttcaagcagatatcgcacatcctcaggcaatgctaa</cdnaseq>|
AA = <aaseq>MEQLNAKLYHRYTALKKRKLLDEGLDQKRAADINELRQAMKDWV AELQSENERLVAKLTQKEQQLVEAQTLLLDETRKTKELNSEILKLQCLLAEKNDANHI ATGSPDTTAEMTIENQTPISPAKKTPKSNSRERNIRSIEKAIVPRNGFQEEGRDLDSC RRHMSISGSATEESSSTCMFHLLAESMVGMKFSVKNETEGFSLSVSHEASGYNFTLTW VDQPGGSEWSYQYSSLGTLDRIAMGWMKEDIKFSSTMCPVFFKQISHILRQC</aaseq>|
DNA = <dnaseqindica>2603..2784#1932..2060#1828..1861#1485..1717#477..538#303..360#142..208#1..48#atggagcagctcaacgccaagctctaccacaggtacaccgccctcaaggtatatacatactgccactgatctacgacatggacacggatttcctcttaatcgtttcgtgctcgtgtgctgccgctttttggatgcgcgcagaagcggaagctgctcgacgaggggctggaccagaagcgggctgccgacatcaacgagctccgccaaggtaaaccgacgggaagagaaagacttatggaattgggagaaatttctgttaggttcacaatttggctccgttttcgttgtttctgatgatgcagccatgaaagattgggtggccgagctccagagcgagaacgagcgcctcgttgccaagctgtaagattgcaaaatgctgctcctgcggcgatagggtttcacgcgttcgtgctgttttgggggaaatgatgcctgatctattgctttctcttcttttgttaatttcttgatgccaggacccaaaaggagcagcagcttgtggaggcacagacgcttttacttgatgagactcggaagagtaagaattctttttttttttacttaaactataattttaagaaaaatgtttagtagcatgcaagtataaaccatgcttgtttggaggtggaactggtgtgcgtctttgggaacaaagggaaataatctgttgctgattgaaagcactatgtggttggcacatactgatacctcttaaatatgtgcttatcttcaattatgatctgcattggaggcaactcacatatatctaacttattcaacccttgcaagtaagcagcttcccagttgtgacctaaccatttcttttccagtggtgcaagaaaaactgatttgcacgaattcaaaagaactattgcttgatctatgtgggagattttctttacatcttacttggttggtcagcatagttctagaaaatagccaccagaagttttgatcccctttaaatgtgatgtttacactaaatagattagcaagaagcaaacacatgatatgaagtattggttaattaagttgcacaaaaacagtgactgctatcggcagacatcattagcagagttggaggatggaaccggatttttgaaatctgatcatgggagctgtggattcgcttgctagtgatgacataagtggtgctccgcgttgccaagatgcagcttgctttgcagggagacccgggaagggatagtagtaatacacttttagttagtaatatgcttttcagctaaacatggtaatgcaagtcgtgactgagttttgtgttccctaactgatttttttttcttattatcatcttgcactcagtaaattcatcaggttcaccatagtaaagtatcacccaaatatgaagtgaaccaggccttgtaaaattaaatttactctgtagatggtctgagttctgtcttccatattaatttggtattaatgaagttgacttaagttaattttgtttacaaaacatgcagcaaaggagctcaatagtgaaatattgaaacttcagtgtctcctggctgagaagaatgatgcaaaccatattgcgacagggtctcctgacacaaccgccgaaatgactatagaaaatcaaactccaatttcacctgcaaagaagacgccaaagtcaaacagcagggagagaaatattcgctccattgaaaaagcgattgttcctcgtaatggctttcaggaggaaggaagagatgtaagttttccgtaacagttgaactacctattagcaatgtacaagtatgcaagagaacgagtgtgttgagctcttctaatttctgtttatgatttggatcggttttgtagcttgattcctgtagaagacatatgagcatctcaggttagtggtaatatacacacagttacatgcagtagtggattgttttaacttaaaagtatgttgtttgcagggagtgcgacagaagaaagttccagtacctgtatgtttcatctgctggctgaatcaatggttgggatgaaattttcagtgaagaacgaaacagaaggattttcactttcagtctcccatgaagctagtggtatttgtaacatcaaatttcatgctatcgttttagccacagcatagtactggaatatcacatcatagtttttattcatcatgtttaacttgtgttcatctctttcacattcatttgattttgcatatagctccctccatgtttgccaagcaagctgagtattcaagcaaacagttttggaaagaacaatctttcaacctgaaaaaaaaaatccttttaaccaccagaagagttgtgtgaatacatattctaatgctttaatatctttgtcaagaatgacgcatatctctctgtagagtgcgtgtacacatctctttggagctcagccgtttgtagcagaactcgtattgtataccagcatacagtgtacttacatgttacatgtttgggtgcataacctgagggtcatgtcaccaatgttttcagttcaggatttataacttcgatcccttttaccatactgttagaacatttgatttgtaaatatcatatcacgtgtaaggaaccaattacattttctaactgaattgttcaaattgtaggttacaacttcactctcacatgggtagaccaacctggtggcagtgaatggtcatatcagtactcctcgttgggcaccctggacaggatagctatgggctggatgaaggaggacataaaattcagctcgaccatgtgtcctgtattcttcaagcagatatcgcacatcctcaggcaatgctaa</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063811.1 RefSeq:Os06g0245600]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 6]]
[[Category:Chromosome 6]]

@@ Line 5: / Line 5: @@
 *'''''Os06g0245600''''' '''''<=>''''' '''''OsRPL1,RPL1'''''
 ===Function===
-* Analysis of the putative rice brassinosteroid receptor OsBRI1, a key hormone signaling gene, indicated that '''''RPL1''''' may be involved in the regulation of epigenomic modification of the gene.
+* HSF binding protein (HSBP) is reported to modulate the function of '''''HSF''''' by binding to their trimer and hence to regulate HSR.
-*  '''''RPL1''''' regulated phenotypic plasticity likely through its involvement in epigenetic processes affecting responses of the plant to phytohormones.
+* '''''OsHSBP1''''' and '''''OsHSBP2''''' play important role in the regulation of the HSR and seed development of rice.
 ===Phenotypic analysis===
-* The rice (Oryza sativa L.) mutant, rice plasticity 1 (rpl1), that displayed increased environment-dependent phenotypic variations.
+* Both '''''OsHSBP1''''' and '''''OsHSBP2''''' were also important for seed development, as their knock-down lines were associated with significant seed abortion.
-* The rpl1 mutation led to an increase in DNA methylation on repetitive sequences and a decrease in overall histone acetylation. In addition, the mutation affected responses of the rice plant to phytohormones such as brassinosteroid, gibberellin, and cytokinin.
+* The thermotolerance assay revealed that '''''OsHSBP1''''' and '''''OsHSBP2''''' are negative regulators of HSR and involved in acquired thermotolerance but not in basal thermotolerance since their over-expression transgenic lines pre-heated at sublethal temperature, showed significantly decreased seedling survival after heat shock treatment.
+* Furthermore, antioxidant activity and gene expression of catalase and peroxidase was significantly increased in knock-down transgenic seedlings of OsHSBP1 and OsHSBP2 after heat stress compared with the wild type.
 ===Expression===
-* RPL1 was expressed in all tissues examined.
+* Both '''''OsHSBP1''''' and '''''OsHSBP2''''' expressed ubiquitously in all tissues under normal growth conditions while their expression levels were significantly increased during recovery after heat shock treatment.
 ===Subcellular localization===
-* The protein was localized in the nucleus and its distribution in the nucleus overlapped with heterochromatin.
+* Subcellular localization analysis revealed the cytosol-nuclear localization of both '''''OsHSBP1''''' and '''''OsHSBP2''''' in onion epidermal cells.
 ==Labs working on this gene==

@@ Line 14: / Line 14: @@
 * RPL1 was expressed in all tissues examined.
-===Evolution===
+===Subcellular localization===
 * The protein was localized in the nucleus and its distribution in the nucleus overlapped with heterochromatin.

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice '''''Os06g0245600''''' was reported as '''''RPL1''''' in 2011 <ref name="ref1" /> by researchers from China.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+* Analysis of the putative rice brassinosteroid receptor OsBRI1, a key hormone signaling gene, indicated that '''''RPL1''''' may be involved in the regulation of epigenomic modification of the gene.
 ===Expression===
-Please input expression information here.
+* RPL1 was expressed in all tissues examined.
 ===Evolution===
-Please input evolution information here.
+* The protein was localized in the nucleus and its distribution in the nucleus overlapped with heterochromatin.
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
-Please input related labs here.
+* National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research, Huazhong Agricultural University, Wuhan 430070, China
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]

← Older revision		Revision as of 08:51, 14 May 2015
Line 20:		Line 20:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]
−	~~GeneName = Os06g0245600\|~~
−	~~Description = ab initio prediction with EST support\|~~
−	~~Version = NM_001063811.1 GI:115467353 GeneID:4340635\|~~
−	~~Length = 2784 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os06g0245600, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 6\|Chromosome 6]]\|~~
−	~~AP = Chromosome 6:7554464..7557247\|~~
−	~~CDS = 7554464..7554645,7555188..7555316,7555387..7555420,7555531..7555763,7556710..7556771<br>,7556888..7556945,7557040..7557106,7557200..7557247\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008399:7554464..7557247~~
−	~~source=RiceChromosome06~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008399:7554464..7557247~~
−	~~source=RiceChromosome06~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atggagcagctcaacgccaagctctaccacaggtacaccgccctcaagaagcggaagctgctcgacgaggggctggaccagaagcgggctgccgacatcaacgagctccgccaagccatgaaagattgggtggccgagctccagagcgagaacgagcgcctcgttgccaagctgacccaaaaggagcagcagcttgtggaggcacagacgcttttacttgatgagactcggaagacaaaggagctcaatagtgaaatattgaaacttcagtgtctcctggctgagaagaatgatgcaaaccatattgcgacagggtctcctgacacaaccgccgaaatgactatagaaaatcaaactccaatttcacctgcaaagaagacgccaaagtcaaacagcagggagagaaatattcgctccattgaaaaagcgattgttcctcgtaatggctttcaggaggaaggaagagatcttgattcctgtagaagacatatgagcatctcagggagtgcgacagaagaaagttccagtacctgtatgtttcatctgctggctgaatcaatggttgggatgaaattttcagtgaagaacgaaacagaaggattttcactttcagtctcccatgaagctagtggttacaacttcactctcacatgggtagaccaacctggtggcagtgaatggtcatatcagtactcctcgttgggcaccctggacaggatagctatgggctggatgaaggaggacataaaattcagctcgaccatgtgtcctgtattcttcaagcagatatcgcacatcctcaggcaatgctaa</cdnaseq>\|
−	AA = <aaseq>MEQLNAKLYHRYTALKKRKLLDEGLDQKRAADINELRQAMKDWV AELQSENERLVAKLTQKEQQLVEAQTLLLDETRKTKELNSEILKLQCLLAEKNDANHI ATGSPDTTAEMTIENQTPISPAKKTPKSNSRERNIRSIEKAIVPRNGFQEEGRDLDSC RRHMSISGSATEESSSTCMFHLLAESMVGMKFSVKNETEGFSLSVSHEASGYNFTLTW VDQPGGSEWSYQYSSLGTLDRIAMGWMKEDIKFSSTMCPVFFKQISHILRQC</aaseq>\|
−	DNA = <dnaseqindica>2603..2784#1932..2060#1828..1861#1485..1717#477..538#303..360#142..208#1..48#atggagcagctcaacgccaagctctaccacaggtacaccgccctcaaggtatatacatactgccactgatctacgacatggacacggatttcctcttaatcgtttcgtgctcgtgtgctgccgctttttggatgcgcgcagaagcggaagctgctcgacgaggggctggaccagaagcgggctgccgacatcaacgagctccgccaaggtaaaccgacgggaagagaaagacttatggaattgggagaaatttctgttaggttcacaatttggctccgttttcgttgtttctgatgatgcagccatgaaagattgggtggccgagctccagagcgagaacgagcgcctcgttgccaagctgtaagattgcaaaatgctgctcctgcggcgatagggtttcacgcgttcgtgctgttttgggggaaatgatgcctgatctattgctttctcttcttttgttaatttcttgatgccaggacccaaaaggagcagcagcttgtggaggcacagacgcttttacttgatgagactcggaagagtaagaattctttttttttttacttaaactataattttaagaaaaatgtttagtagcatgcaagtataaaccatgcttgtttggaggtggaactggtgtgcgtctttgggaacaaagggaaataatctgttgctgattgaaagcactatgtggttggcacatactgatacctcttaaatatgtgcttatcttcaattatgatctgcattggaggcaactcacatatatctaacttattcaacccttgcaagtaagcagcttcccagttgtgacctaaccatttcttttccagtggtgcaagaaaaactgatttgcacgaattcaaaagaactattgcttgatctatgtgggagattttctttacatcttacttggttggtcagcatagttctagaaaatagccaccagaagttttgatcccctttaaatgtgatgtttacactaaatagattagcaagaagcaaacacatgatatgaagtattggttaattaagttgcacaaaaacagtgactgctatcggcagacatcattagcagagttggaggatggaaccggatttttgaaatctgatcatgggagctgtggattcgcttgctagtgatgacataagtggtgctccgcgttgccaagatgcagcttgctttgcagggagacccgggaagggatagtagtaatacacttttagttagtaatatgcttttcagctaaacatggtaatgcaagtcgtgactgagttttgtgttccctaactgatttttttttcttattatcatcttgcactcagtaaattcatcaggttcaccatagtaaagtatcacccaaatatgaagtgaaccaggccttgtaaaattaaatttactctgtagatggtctgagttctgtcttccatattaatttggtattaatgaagttgacttaagttaattttgtttacaaaacatgcagcaaaggagctcaatagtgaaatattgaaacttcagtgtctcctggctgagaagaatgatgcaaaccatattgcgacagggtctcctgacacaaccgccgaaatgactatagaaaatcaaactccaatttcacctgcaaagaagacgccaaagtcaaacagcagggagagaaatattcgctccattgaaaaagcgattgttcctcgtaatggctttcaggaggaaggaagagatgtaagttttccgtaacagttgaactacctattagcaatgtacaagtatgcaagagaacgagtgtgttgagctcttctaatttctgtttatgatttggatcggttttgtagcttgattcctgtagaagacatatgagcatctcaggttagtggtaatatacacacagttacatgcagtagtggattgttttaacttaaaagtatgttgtttgcagggagtgcgacagaagaaagttccagtacctgtatgtttcatctgctggctgaatcaatggttgggatgaaattttcagtgaagaacgaaacagaaggattttcactttcagtctcccatgaagctagtggtatttgtaacatcaaatttcatgctatcgttttagccacagcatagtactggaatatcacatcatagtttttattcatcatgtttaacttgtgttcatctctttcacattcatttgattttgcatatagctccctccatgtttgccaagcaagctgagtattcaagcaaacagttttggaaagaacaatctttcaacctgaaaaaaaaaatccttttaaccaccagaagagttgtgtgaatacatattctaatgctttaatatctttgtcaagaatgacgcatatctctctgtagagtgcgtgtacacatctctttggagctcagccgtttgtagcagaactcgtattgtataccagcatacagtgtacttacatgttacatgtttgggtgcataacctgagggtcatgtcaccaatgttttcagttcaggatttataacttcgatcccttttaccatactgttagaacatttgatttgtaaatatcatatcacgtgtaaggaaccaattacattttctaactgaattgttcaaattgtaggttacaacttcactctcacatgggtagaccaacctggtggcagtgaatggtcatatcagtactcctcgttgggcaccctggacaggatagctatgggctggatgaaggaggacataaaattcagctcgaccatgtgtcctgtattcttcaagcagatatcgcacatcctcaggcaatgctaa</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063811.1 RefSeq:Os06g0245600]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 6]]~~
−	~~[[Category:~~Chromosome 6]]

← Older revision		Revision as of 20:20, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os06g0245600\|		GeneName = Os06g0245600\|