Os06g0561000 - Revision history

Rice2012: /* Structured Information */

2015-06-12T08:15:38Z

‎Structured Information

Zhangye: /* Expression */

2015-03-05T06:31:03Z

‎Expression

Zhangye at 06:21, 5 March 2015

2015-03-05T06:21:10Z

124.16.129.48 at 20:24, 22 July 2012

2012-07-22T20:24:45Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os06g0561000| Description = Similar to Myo-inositol oxygenase| Version = NM_001064406.1 GI:115468543 GeneID:4341305| Length = 3905 bp| Definiti..."

2012-06-24T09:23:16Z

Created page with "{{JaponicaGene| GeneName = Os06g0561000| Description = Similar to Myo-inositol oxygenase| Version = NM_001064406.1 GI:115468543 GeneID:4341305| Length = 3905 bp| Definiti..."

New page

{{JaponicaGene|
GeneName = Os06g0561000|
Description = Similar to Myo-inositol oxygenase|
Version = NM_001064406.1 GI:115468543 GeneID:4341305|
Length = 3905 bp|
Definition = Oryza sativa Japonica Group Os06g0561000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
AP = Chromosome 6:22355480..22359384|
CDS = 22355662..22355692,22355836..22355950,22357051..22357132,22357267..22357471,22358060..22358119<br>,22358243..22358295,22358412..22358534,22358667..22358736,22358835..22358913<br>,22358995..22359076,22359179..22359205|
GCID = <gbrowseImage1>
name=NC_008399:22355480..22359384
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008399:22355480..22359384
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgaccatcaccattgagcagcctcaccttgatgctatcgccgaccggaaggtcgccggcggcggcggcggcgacaacgcggcggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgccttcaggaattatgaggccgagtctgagaggaaggagacggtggaggagttctaccgggtcaaccacatcaaccagacatatgatttcgtgaggcggatgcgggaggagtacggtagggtggacaagacggagatggggatctgggagtgcatcgagctgctcaacgagttcatcgacgacagcgacccggacctcgacatgccgcagatcgagcacctcctccagaccgccgaggccatccgcaaggatttccccgacgaggactggctccacctcactggcctcatccacgatctgggcaaggtgctgctgcatcccagctttggggagctcccacagtggtcagtcgtcggtgacaccttccccgtcggctgcgcattcgacgaatgcaacgtccacttcaagtacttcaaggagaaccctgactacctgaacccaaagctcaacaccaagtttggggcctactccgagggctgtggccttgacaatgttctcatgtcctggggccatgacgactacatgtacctggttgccaaggagaacaagaccactcttccttctgcaggcttgttcatcatcagatatcattcattctaccccctgcacaagcatggagcctacatgcatctgatgaacgatgaggacaaggagaacctcaaatggctgcgtgtgttcaacaaatacgacctgtacagcaagagcaatgagaggatagacgttgagaaggtgaagccctactacatgtcactcatcgaaaagtatttcccggccaagttgagatggtga</cdnaseq>|
AA = <aaseq>MTITIEQPHLDAIADRKVAGGGGGDNAAELVLDGGFVVPDSNAF GNAFRNYEAESERKETVEEFYRVNHINQTYDFVRRMREEYGRVDKTEMGIWECIELLN EFIDDSDPDLDMPQIEHLLQTAEAIRKDFPDEDWLHLTGLIHDLGKVLLHPSFGELPQ WSVVGDTFPVGCAFDECNVHFKYFKENPDYLNPKLNTKFGAYSEGCGLDNVLMSWGHD DYMYLVAKENKTTLPSAGLFIIRYHSFYPLHKHGAYMHLMNDEDKENLKWLRVFNKYD LYSKSNERIDVEKVKPYYMSLIEKYFPAKLRW</aaseq>|
DNA = <dnaseqindica>183..213#357..471#1572..1653#1788..1992#2581..2640#2764..2816#2933..3055#3188..3257#3356..3434#3516..3597#3700..3726#agctcaggcagcagcagaaagcaacgccaatacgccattgccgtgctcctcgacctgcatgcacctctgttcttggcgttgagatacatagaggcttggggtgggtgtttaagaactaagaccggagttaattagcacccctgtggctaccatcgatctgtctaaagagtgattagatcgagatgaccatcaccattgagcagcctcaccttggtgagctcatgatccttttctctctctctcttgatttcttgattccagtccgtgaggaagaaaaggttcagcaatgttcctggatggatggatggatcgtggaactaattaaggttctaagttctgacatggttcgcttgcagatgctatcgccgaccggaaggtcgccggcggcggcggcggcgacaacgcggcggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgccttcaggtcagctacatattcctgcataggaaaaaaacagagcatcatgcaaaaacagagcaaaacagagtgtcaactatggttaaaaatattatcccctcagaagaaaaaatatttaaaatatttctagtggattagggaatttaattaatcatgtagtatttttttaaatatggtgaaggttattgtttctctttgcaaaaaacagagtgggcagcaagttttttttcaagtggacatgtgcaaataatcatatattttgcatatggaatgtcttcttttttctcctttgcaaaaacagaggttggtattacttgctccctctaaaataagccaacatcgtattaagatatgatatattttagtacaacgttatatttagatttgttatattagaatgattggcttatttttaggacaatgcgagcaggctgacaagacagacatgatattttcgtacgaaattagtaaactagaacatgggcacaactcgaaatgaaagagatgtgtggccattcttgaaacttgtggttgtgcattcaaatcgtacatacctctctctcaagccacaatacatgtttgtcccattacttcaagttgtctttccatgattagccgtttggtttagtttttgttgaaacgtccaaacccaggttttgtttttttttcagataaaactggacaagaagaagatgaatttgactacttaaacgtaaactcaattttgctgaccaaagtggcaagctacttactggtcaaataaaataaaataaagacttatcttttcttgtacgatttcaaaggtttctgcgtgtctatgcacagtgaatgtcccacgtggcatctgtggctgcattaacatggccttttgcctattccttttttgcacgttatcattttcgcttcttcaggaattctgtacttcaatttgatgtttctttaaaaagtccaacacgtggacaaataaaacactacctgtgttcgaaaaataaaaaccttatggtcataatctagaaattgaaatctttttcaacggtggtagtaaaagatatttcttaaaaaaaaggaattaaccggaataatatggtgatgttttaaatctccaggaattatgaggccgagtctgagaggaaggagacggtggaggagttctaccgggtcaaccacatcaaccagacatatgatttcgtaagtgcaaattctgtatctaataatctttttttaaaaaaatacactcataatatcctaaacgacaagtaaaaaagaacgggagctttaatatatgagatttaccattattttggtgcattgtaacattgcaggtgaggcggatgcgggaggagtacggtagggtggacaagacggagatggggatctgggagtgcatcgagctgctcaacgagttcatcgacgacagcgacccggacctcgacatgccgcagatcgagcacctcctccagaccgccgaggccatccgcaaggatttccccgacgaggactggctccacctcactggcctcatccacggtaaattaaactattttataaccgccacaaaaaccgtcactgtaattgcacatccaccgcgtcgccgcaatgaactgataggcaggcctcacacgatacaccgggtaggatttgttggtgtaagagcaggtacaatagcaggctattagccagctataaatatattttaatgagataaacgatgagagagaagagtagtgggctacagatctgtagccagctgcagcacggacttcaagacgcaatgtgtgtatgacaggtgataccatatattaatagtatagtaagcaactattgaatgaattggctattagattagctatagatgaattggagctagtagtgggctatactattaaacttgctctaaggtagtaataatagtatatatctaggactcatccagtcactagcaggtaggccatacgataaataaagatgaataattagatatgatggagtgatacagtatcagtgacggttcgtaacaacctctttggaattactcggctaaaggaagaaagaaatgaaatggcaatacagtggggcacacttgtgacgtgtaacatgttctcttttctttttcagatctgggcaaggtgctgctgcatcccagctttggggagctcccacagtggtcagtcgtcggtaagaaacaaacaacagaagcaaacagcttattgccatctcactgaaacttcttcagattcagctaggaacaatagctgaacatccatccatctctgaatctgaatgtctttgacctttcaggtgacaccttccccgtcggctgcgcattcgacgaatgcaacgtccacttcaaggtaaccaatgaatcatctagcaaactgttcaagacaaatcaaaagcgtagatggatcaagcagtgagctagtggtctaagactgaaactgaaaatattttgtctgaaaatgtgcagtacttcaaggagaaccctgactacctgaacccaaagctcaacaccaagtttggggcctactccgagggctgtggccttgacaatgttctcatgtcctggggccatgacgactacatgtacctggtaaaacacacggttcatcgtgtcgattcatcaccaattgcataccatggagcagagaaatcttcagttctagtactgaggttgtagttttctctgaaatgttgatgtgtttcttgttcttgttcatctcaggttgccaaggagaacaagaccactcttccttctgcaggcttgttcatcatcagatatcattcattctaccgtaagtgcgcgcgacagtcttctttttttcaattttgtcagaattacaagttttaagtaagttttagctaaattttgctatctttgtccatgattcagccctgcacaagcatggagcctacatgcatctgatgaacgatgaggacaaggagaacctcaaatggctgcgtgtgttcaagtaagccaccagattgatcaccctgcatcttaatgtatatagtatgaaaatgtactgaacatgaatggttttcttctgcagcaaatacgacctgtacagcaagagcaatgagaggatagacgttgagaaggtgaagccctactacatgtcactcatcgaaaaggtatgatcgattttgcagcgaatactgaagcttgaaacagacttctttttgtcctaaaacctgaagaaatgatcttctttttctctctgaattctctcgcagtatttcccggccaagttgagatggtgaagaagagggagagaacataaaaaaaattggtcgaaattatcctgtaatatgatgtaattgcaggagttcagttggctgtacaagtatgtagtagtacgtgtacacattttgtatgttaagagcagaatttgttgggagccatgcacgtggaataaaagttgccggtgattgttctttgt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064406.1 RefSeq:Os06g0561000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 6]]
[[Category:Chromosome 6]]

@@ Line 17: / Line 17: @@
 *''OsMIOX'' was expressed '''predominantly''' in the '''roots''' and '''induced by drought''', '''H<sub>2</sub>O<sub>2</sub>''', '''salt''', '''cold''' and '''abscisic acid'''. ''OsMIOX'' was more strongly induced in IRAT109 than that in Nipponbare under all treatments except for cold. The '''expression peak''' of ''OsMIOX'' was '''later''' in IRAT109 than that in Nipponbare under all treatments except salt and cold, indicating that the '''damage in UR''' was '''weaker''' and '''occurred later''' than that in LR, which suggesting that ''OsMIOX'' may be involved in abiotic stress responses, and related to drought tolerance in plant<ref name="ref1"/>.
-*The '''GUS activity''' was detected in '''spikelets''', '''stem''', '''leaves''', especially in '''roots''', and the activity was '''strongly induced by drought stress''', indicating that ''OsMIOX'' was expressed in all rice organs and induced by drought stress.
+*The '''GUS activity''' was detected in '''spikelets''', '''stem''', '''leaves''', especially in '''roots''', and the activity was '''strongly induced by drought stress''', indicating that ''OsMIOX'' was expressed in all rice organs and induced by drought stress. Overexpression of ''OsMIOX'' '''increases free proline contents''' under drought stress and '''increases the ROS-scavenging ability''' and '''decreases oxidative damage'''<ref name="ref1"/>.
-*The third ranked gene is Os06g0561000. From the GO annotation, its function is '''inferred to participate in biological process''' as '''inositol catabolic process''', '''L-ascorbic acid biosynthetic process''' and '''oxidation-reduction'''. Its
+*The third ranked gene is Os06g0561000. From the GO annotation, its function is '''inferred to participate in biological process''' as '''inositol catabolic process''', '''L-ascorbic acid biosynthetic process''' and '''oxidation-reduction'''. Its corresponding protein is placed in '''cytoplasm''' by GO that has molecular function as '''iron ion binding''', '''oxidoreductase activity''', '''metal ion binding''' and '''inositol oxygenase activity'''. It is expressed as unnamed inositol oxygenase putatively<ref name="ref2"/><ref name="ref3"/>.
 ===Evolution===

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+'''''OsMIOX''''', a '''myo-inositol oxygenase gene''', '''improves drought tolerance''' through '''scavenging of reactive oxygen species''' in rice<ref name="ref1"/>.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+''OsMIOX'' has a '''specific function''' in '''drought stress tolerance''' by '''decreasing oxidative damage'''. The '''expression levels''' of '''ROS scavenging genes''', ''CatB'', ''POD1'', ''POD2'', ''APX1'' and ''APX2'' were '''indeed up-regulated''', which '''may''' contribute to '''decrease the accumulation of ROS''' in OsMIOX-overexpressing plants under drought stress<ref name="ref1"/>.
 ===Expression===
-Please input expression information here.
+*''OsMIOX'' was expressed '''predominantly''' in the '''roots''' and '''induced by drought''', '''H<sub>2</sub>O<sub>2</sub>''', '''salt''', '''cold''' and '''abscisic acid'''. ''OsMIOX'' was more strongly induced in IRAT109 than that in Nipponbare under all treatments except for cold. The '''expression peak''' of ''OsMIOX'' was '''later''' in IRAT109 than that in Nipponbare under all treatments except salt and cold, indicating that the '''damage in UR''' was '''weaker''' and '''occurred later''' than that in LR, which suggesting that ''OsMIOX'' may be involved in abiotic stress responses, and related to drought tolerance in plant<ref name="ref1"/>.
 ===Evolution===
-Please input evolution information here.
+The ORF of OsMIOX obtained from UR variety, IRAT109, encodes a protein of 308 amino acids (aa). The BLAST analysis showed that the predicted amino acid sequence of the OsMIOX protein had '''high identity''' to other plant MIOX proteins, especially to Zea mays
-You can also add sub-section(s) at will.
+===Knowledge Extension===
 ==Labs working on this gene==
-Please input related labs here.
+*Key Lab of Crop Heterosis and Utilization of Ministry of Education, Beijing Key Lab of Crop Genetic Improvement, China Agricultural University, Beijing 100193, PR China
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==

← Older revision		Revision as of 20:24, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os06g0561000\|		GeneName = Os06g0561000\|

@@ Line 55: / Line 55: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]