Os06g0583400 - Revision history

Xysj2019: /* Function */

2017-03-03T07:50:54Z

‎Function

Xysj2019 at 07:50, 3 March 2017

2017-03-03T07:50:14Z

Rice2012: /* Structured Information */

2015-06-12T08:16:39Z

‎Structured Information

Xiaoboy8888: /* Expression */

2014-05-26T02:30:10Z

‎Expression

Xiaoboy8888: /* Evolution */

2014-05-26T02:29:34Z

‎Evolution

Xiaoboy8888: /* Evolution */

2014-05-26T02:22:30Z

‎Evolution

Xiaoboy8888: /* References */

2014-05-21T03:44:13Z

‎References

Xiaoboy8888: /* References */

2014-05-21T03:31:38Z

‎References

Xiaoboy8888: /* Labs working on this gene */

2014-05-21T03:21:48Z

‎Labs working on this gene

Xiaoboy8888: /* Evolution */

2014-05-21T03:18:24Z

‎Evolution

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 * Histone deacetylases (HDACs) modulate chromatin structure and transcription.
 * HDACs have been studied as negative regulators in eukaryotic transcription.
-* The '''''OsHDAC1''''' gene encoded a protein of approximately 57 kDa that shared 73.5, 72.7, 79.9, and 57.1% amino acid sequence identity with the '''''OsHDAC2, OsHDAC3''''', maize '''''RPD3''''', and human '''''HDAC1''''' proteins, respectively.
+* The '''''OsHDAC1''''' gene encoded a protein of approximately 57 kDa that shared 73.5%, 72.7%, 79.9%, and 57.1% amino acid sequence identity with the '''''OsHDAC2, OsHDAC3''''', maize '''''RPD3''''', and human '''''HDAC1''''' proteins, respectively.
 * '''''OsHDAC1''''' functions in the genome-wide programming of gene expression.
 ===Expression===
 * '''''OsHDAC1''''' was expressed at similar levels in the leaves, roots, and callus cells, whereas '''''OsHDAC2''''' and '''''OsHDAC3''''' were expressed in the roots and callus cells, but not in the leaves, exhibiting distinct tissue specificity.

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-Please input one-sentence summary here.
+The rice '''''Os06g0583400''''' was reported as '''''OsHDAC1''''' in 2002 <ref name="ref1" /> by researchers from Korea.
 ==Annotated Information==
 ===Function===
 ===Evolution===
-Phylogenetic analysis indicates that the HDA702, HDA710 and HDA703 rice genes belong to the same clade as AtHD1/HDA19, with HDA702 as the closest homolog of AtHD1/HDA19. AtHD1/HDA19 is the most studied HDAC gene in Arabidopsis.
+* Genomic structures and Southern blot analyses revealed that '''''OsHDAC1''''', '''''OsHDAC2''''', '''''OsHDAC3''''' contained seven, six, and seven exons, respectively, and constituted a class I-type family in the rice genome.
 ==Labs working on this gene==
-.Institute de biotechnologie des Plantes, Université Paris sud 11, 91405 Orsay, France.
+* Department of Biological Science, Myongji University, Yongin 449-728, Korea, and
-.South China Botanical Garden,Chinese Academy of Sciences, Guangzhou 510650, China
+* Department of Bioscience and Biotechnology, Sejong University, Seoul 143-747, Korea
 ==References==
-[1] Yongfeng Hu, Fujun Qin, Limin Huang, Qianwen Sun, Chen Li, Yu Zhao, Dao-Xiu Zhou
+<references>
+* <ref name="ref1">
-Rice histone deacetylase genes display specific expression patterns and developmental functions, Biochemical and Biophysical Research Communications, 2009, 388: 266–271.
+Jang IC, Pahk YM, Song SI, Kwon HJ, Nahm BH, Kim JK. Structure and expression
+of the rice class-I type histone deacetylase genes OsHDAC1-3: OsHDAC1
-[2] Wenqun Fua, Keqiang Wu, Jun Duan
+overexpression in transgenic plants leads to increased growth rate and altered
+architecture. Plant J. 2003 Feb;33(3):531-41. PubMed PMID: 12581311.</ref>
-Sequence and expression analysis of histone deacetylases in rice, Biochemical and Biophysical Research Communications, 2007 356: 843–850.
+</references>
 ==Structured Information==

@@ Line 28: / Line 28: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]

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 ===Expression===
 The length of OsHDAC701/HDAC1 cDNA is 1859bp, OsHDAC701/HDAC1 contains seven exons and encoding a 518 amino acid composition of protein products. Similar to other HDAC genes, HDAC702 shows a relatively high level in developing panicles and calli. The gene is clearly repressed by drought and salt. HDA702, HDA710 and HDA703 correspond respectively to OsHDAC1–3. Phylogenetic analysis indicates that the 3 rice genes belong to the same clade as AtHD1/HDA19, with HDA702 as the closest homolog of AtHD1/HDA19. AtHD1/HDA19 is the most studied HDAC gene in Arabidopsis. It is shown that over-expression of HDA702/HDAC1enhances root growth. Based on the RT-PCR of the HDAC702 gene, the gene was detected in leaves, stems, and roots, however, the levels of accumulation differed among different organs. To investigate the expression pattern of HDAC gene in response to environmental stress conditions, RT-PCR was conducted using total RNA isolated from leaves of seven day-old rice seedlings that were subjected to cold (4℃), mannitol and salt (NaCl) treatment. After these kinds of treatments, the expression of HDAC702 was increased.(Dao-Xiu Zhou et al.,2009)
-[[File:QQ截图20140526101312.png]]===Evolution===
+===Evolution===
 Phylogenetic analysis indicates that the HDA702, HDA710 and HDA703 rice genes belong to the same clade as AtHD1/HDA19, with HDA702 as the closest homolog of AtHD1/HDA19. AtHD1/HDA19 is the most studied HDAC gene in Arabidopsis.
 ==Labs working on this gene==

@@ Line 10: / Line 10: @@
 ===Expression===
 The length of OsHDAC701/HDAC1 cDNA is 1859bp, OsHDAC701/HDAC1 contains seven exons and encoding a 518 amino acid composition of protein products. Similar to other HDAC genes, HDAC702 shows a relatively high level in developing panicles and calli. The gene is clearly repressed by drought and salt. HDA702, HDA710 and HDA703 correspond respectively to OsHDAC1–3. Phylogenetic analysis indicates that the 3 rice genes belong to the same clade as AtHD1/HDA19, with HDA702 as the closest homolog of AtHD1/HDA19. AtHD1/HDA19 is the most studied HDAC gene in Arabidopsis. It is shown that over-expression of HDA702/HDAC1enhances root growth. Based on the RT-PCR of the HDAC702 gene, the gene was detected in leaves, stems, and roots, however, the levels of accumulation differed among different organs. To investigate the expression pattern of HDAC gene in response to environmental stress conditions, RT-PCR was conducted using total RNA isolated from leaves of seven day-old rice seedlings that were subjected to cold (4℃), mannitol and salt (NaCl) treatment. After these kinds of treatments, the expression of HDAC702 was increased.(Dao-Xiu Zhou et al.,2009)
-===Evolution===
+[[File:QQ截图20140526101312.png]]===Evolution===
 Phylogenetic analysis indicates that the HDA702, HDA710 and HDA703 rice genes belong to the same clade as AtHD1/HDA19, with HDA702 as the closest homolog of AtHD1/HDA19. AtHD1/HDA19 is the most studied HDAC gene in Arabidopsis.

← Older revision		Revision as of 03:44, 21 May 2014
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	Rice histone deacetylase genes display specific expression patterns and developmental functions, Biochemical and Biophysical Research Communications, 2009, 388: 266–271.		Rice histone deacetylase genes display specific expression patterns and developmental functions, Biochemical and Biophysical Research Communications, 2009, 388: 266–271.
		+
	[2] Wenqun Fua, Keqiang Wu, Jun Duan		[2] Wenqun Fua, Keqiang Wu, Jun Duan