Os06g0597500 - Revision history

Rice999: /* Annotated Information */

2016-10-14T13:01:21Z

‎Annotated Information

Rice999 at 13:00, 14 October 2016

2016-10-14T13:00:59Z

Rice999: /* Function */

2016-10-14T12:59:04Z

‎Function

Rice999: /* Expression */

2016-10-14T12:56:59Z

‎Expression

Rice999 at 12:56, 14 October 2016

2016-10-14T12:56:26Z

192.168.72.52 at 08:59, 14 May 2015

2015-05-14T08:59:46Z

124.16.129.48 at 20:25, 22 July 2012

2012-07-22T20:25:28Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os06g0597500| Description = Protein prenyltransferase domain containing protein| Version = NM_001064524.1 GI:115468779 GeneID:4341435| Length = ..."

2012-06-24T09:25:25Z

Created page with "{{JaponicaGene| GeneName = Os06g0597500| Description = Protein prenyltransferase domain containing protein| Version = NM_001064524.1 GI:115468779 GeneID:4341435| Length = ..."

New page

{{JaponicaGene|
GeneName = Os06g0597500|
Description = Protein prenyltransferase domain containing protein|
Version = NM_001064524.1 GI:115468779 GeneID:4341435|
Length = 1593 bp|
Definition = Oryza sativa Japonica Group Os06g0597500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
AP = Chromosome 6:24425032..24426624|
CDS = 24425032..24426624|
GCID = <gbrowseImage1>
name=NC_008399:24425032..24426624
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008399:24425032..24426624
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcaatggcggcggcgaggaggggccacgggatgccgctctgggagtgcaacgtgctgatcaggacgctggcgaggcgggggagcttcgcgcgcgtcatggcggtgtactacgacctccgcgcgcggggactcgtggcggacagcttcacctacccgttcgtgctcagggccgtcggggtcctcaagctgtcggtcgaggggcgcaaggcgcacgcggccgctgtcaagaccgggttccggtgggacgcctacaccgggagctcgctgatggagatgtacacgatgctggggcgcgtggacatcgcgcggaaggtgttcgacgaaatgccgagtagggcgctggtgctgtggaacatgatggtcaggtgctacatcaggtgcgggtggtactcggcggcagttgctttgtctgaacagatggagagaagcggtgtcacacctgacagggtgacgttggtgacggcggtgacggcgtgctctagagcaagggacctgagcttgggaaggaggattcatgtgtacatggataacgtcttcggtttcaatctgccagttgcaaatgctctgctggacatgtacacgaagaatgattgcttggaagaggcggtgaaattgttcgagcaaatgcctgcgaggaacataatttcttggaccatacttgtgtcgggatatggccttgctgggcagctggacaaggccagagtgctcttcaaccagtgcaaagagaaggatctaattctgtggactgcaatgatcaatgcgtgtgtgcaacacggatgcttcgaggaggcgctgacattgttccgagatatgcagatgcaacgggttgagccagacaggttcactgttgtcactctcctgacatgctgtgccaatcttggcgctcttgatcaaggtgaatggattcaccagtatgctgaacaaaggaaaatgaagatcgatgcagtcctaggcaccgcattgattgacatgtattctaaatgtgggcacattgagaagtctctagaggtcttctggcgaatgcaaggcagagatgccacagcttggactgccatcatctgtgggctggccacaaatggtcaggctggtagagctcttgaactgtttcaagatatgcagagaagtaaagttaagcccgacggtgttacgtttattggggtgctaagtgcatgctgccatggtggcttggttgatgaaggccggaagcagttccatgcaatgagggaggtttatcagatagaaccaagagttgaacactatagctgccttgtgaacctcctaggtcgtgctggtctactagatgaagctgagaggttgatcggtgacgttccaattaacaaggatgctatgccactgtttggtgcactcctcactgcttgcaaggctcatgggaatgttgagatgagtgaacggttaaccaaacgaatctgtgagcaagattcccaaattactgatgtgaatttgctcatgtctaatgtatatgcaacagcaagtagatgggaggatgtgataagggtacggggcaagatggcacaccctactgtcaagaagaatgcagggtgtagcttgattgaggtgaaggggtactga</cdnaseq>|
AA = <aaseq>MAMAAARRGHGMPLWECNVLIRTLARRGSFARVMAVYYDLRARG LVADSFTYPFVLRAVGVLKLSVEGRKAHAAAVKTGFRWDAYTGSSLMEMYTMLGRVDI ARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVALSEQMERSGVTPDRVTLVTAVTAC SRARDLSLGRRIHVYMDNVFGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISW TILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQR VEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEK SLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGVLSAC CHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGLLDEAERLIGDVPINKDA MPLFGALLTACKAHGNVEMSERLTKRICEQDSQITDVNLLMSNVYATASRWEDVIRVR GKMAHPTVKKNAGCSLIEVKGY</aaseq>|
DNA = <dnaseqindica>1..1593#atggcaatggcggcggcgaggaggggccacgggatgccgctctgggagtgcaacgtgctgatcaggacgctggcgaggcgggggagcttcgcgcgcgtcatggcggtgtactacgacctccgcgcgcggggactcgtggcggacagcttcacctacccgttcgtgctcagggccgtcggggtcctcaagctgtcggtcgaggggcgcaaggcgcacgcggccgctgtcaagaccgggttccggtgggacgcctacaccgggagctcgctgatggagatgtacacgatgctggggcgcgtggacatcgcgcggaaggtgttcgacgaaatgccgagtagggcgctggtgctgtggaacatgatggtcaggtgctacatcaggtgcgggtggtactcggcggcagttgctttgtctgaacagatggagagaagcggtgtcacacctgacagggtgacgttggtgacggcggtgacggcgtgctctagagcaagggacctgagcttgggaaggaggattcatgtgtacatggataacgtcttcggtttcaatctgccagttgcaaatgctctgctggacatgtacacgaagaatgattgcttggaagaggcggtgaaattgttcgagcaaatgcctgcgaggaacataatttcttggaccatacttgtgtcgggatatggccttgctgggcagctggacaaggccagagtgctcttcaaccagtgcaaagagaaggatctaattctgtggactgcaatgatcaatgcgtgtgtgcaacacggatgcttcgaggaggcgctgacattgttccgagatatgcagatgcaacgggttgagccagacaggttcactgttgtcactctcctgacatgctgtgccaatcttggcgctcttgatcaaggtgaatggattcaccagtatgctgaacaaaggaaaatgaagatcgatgcagtcctaggcaccgcattgattgacatgtattctaaatgtgggcacattgagaagtctctagaggtcttctggcgaatgcaaggcagagatgccacagcttggactgccatcatctgtgggctggccacaaatggtcaggctggtagagctcttgaactgtttcaagatatgcagagaagtaaagttaagcccgacggtgttacgtttattggggtgctaagtgcatgctgccatggtggcttggttgatgaaggccggaagcagttccatgcaatgagggaggtttatcagatagaaccaagagttgaacactatagctgccttgtgaacctcctaggtcgtgctggtctactagatgaagctgagaggttgatcggtgacgttccaattaacaaggatgctatgccactgtttggtgcactcctcactgcttgcaaggctcatgggaatgttgagatgagtgaacggttaaccaaacgaatctgtgagcaagattcccaaattactgatgtgaatttgctcatgtctaatgtatatgcaacagcaagtagatgggaggatgtgataagggtacggggcaagatggcacaccctactgtcaagaagaatgcagggtgtagcttgattgaggtgaaggggtactga</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064524.1 RefSeq:Os06g0597500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 6]]
[[Category:Chromosome 6]]

@@ Line 2: / Line 2: @@
 ==Annotated Information==
-[[File:68-Os06g0597500.png|right|thumb|727px|'''Figure 1.''' ''The phenotype of the panicles of the sped1-D mutant..<ref name="ref1" />.'']]
+[[File:68-Os06g0597500.png|right|thumb|427px|'''Figure 1.''' ''The phenotype of the panicles of the sped1-D mutant..<ref name="ref1" />.'']]
 ===Gene Symbol===
 *'''''Os06g0597500''''' '''<=>''' '''''sped1-D,SPED1'''''

@@ Line 2: / Line 2: @@
 ==Annotated Information==
 ===Gene Symbol===
 *'''''Os06g0597500''''' '''<=>''' '''''sped1-D,SPED1'''''

@@ Line 9: / Line 9: @@
 * Overexpression of '''''sped1-D''''' in Arabidopsis resulted in the shortening of pedicels and clusters of siliques, which indicates that the function of sped1-D is highly conserved in monocotyledonous and dicotyledonous plants.
 * '''''sped1-D''''' promotes the shortening of pedicels and secondary branches, perhaps through the CLV-WUS pathway, and influences pollen fertility through the action of Rf1L.
 ===Expression===
 * '''''SPED''''' 1 or '''''sped1-D''''' was constitutively expressed in young inflorescences and other tissues or organs.

@@ Line 11: / Line 11: @@
 ===Expression===
 * '''''SPED''''' 1 or '''''sped1-D''''' was constitutively expressed in young inflorescences and other tissues or organs.
-* However, sped1-D had some effects on the expression of other genes associated with flower development.
+* '''''sped1-D''''' had some effects on the expression of other genes associated with flower development.
 ===Subcellular localization===
 * Subcellular localization indicates that the '''''SPED1-YFP''''' and '''''sped1-D-YFP''''' fusion proteins are mainly targeted to the cytoplasm

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice '''''Os06g0597500''''' was reported as '''''sped1-D''''' in 2014 <ref name="ref1" /> by researchers from China.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+* '''''sped1-D''''' encodes a pentatricopeptide repeat protein.
+* '''''sped1-D''''' may prompt the shortening of pedicels and secondary branches by blocking the action of GID1L2, RFL, and Wox3.
 ===Expression===
-Please input expression information here.
+* '''''SPED''''' 1 or '''''sped1-D''''' was constitutively expressed in young inflorescences and other tissues or organs.
+* However, sped1-D had some effects on the expression of other genes associated with flower development.
-===Evolution===
+===Subcellular localization===
-Please input evolution information here.
+* Subcellular localization indicates that the '''''SPED1-YFP''''' and '''''sped1-D-YFP''''' fusion proteins are mainly targeted to the cytoplasm
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
-Please input related labs here.
+* Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]

← Older revision		Revision as of 08:59, 14 May 2015
Line 20:		Line 20:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]
−	~~GeneName = Os06g0597500\|~~
−	~~Description = Protein prenyltransferase domain containing protein\|~~
−	~~Version = NM_001064524.1 GI:115468779 GeneID:4341435\|~~
−	~~Length = 1593 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os06g0597500, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 6\|Chromosome 6]]\|~~
−	~~AP = Chromosome 6:24425032..24426624\|~~
−	~~CDS = 24425032..24426624\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008399:24425032..24426624~~
−	~~source=RiceChromosome06~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008399:24425032..24426624~~
−	~~source=RiceChromosome06~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atggcaatggcggcggcgaggaggggccacgggatgccgctctgggagtgcaacgtgctgatcaggacgctggcgaggcgggggagcttcgcgcgcgtcatggcggtgtactacgacctccgcgcgcggggactcgtggcggacagcttcacctacccgttcgtgctcagggccgtcggggtcctcaagctgtcggtcgaggggcgcaaggcgcacgcggccgctgtcaagaccgggttccggtgggacgcctacaccgggagctcgctgatggagatgtacacgatgctggggcgcgtggacatcgcgcggaaggtgttcgacgaaatgccgagtagggcgctggtgctgtggaacatgatggtcaggtgctacatcaggtgcgggtggtactcggcggcagttgctttgtctgaacagatggagagaagcggtgtcacacctgacagggtgacgttggtgacggcggtgacggcgtgctctagagcaagggacctgagcttgggaaggaggattcatgtgtacatggataacgtcttcggtttcaatctgccagttgcaaatgctctgctggacatgtacacgaagaatgattgcttggaagaggcggtgaaattgttcgagcaaatgcctgcgaggaacataatttcttggaccatacttgtgtcgggatatggccttgctgggcagctggacaaggccagagtgctcttcaaccagtgcaaagagaaggatctaattctgtggactgcaatgatcaatgcgtgtgtgcaacacggatgcttcgaggaggcgctgacattgttccgagatatgcagatgcaacgggttgagccagacaggttcactgttgtcactctcctgacatgctgtgccaatcttggcgctcttgatcaaggtgaatggattcaccagtatgctgaacaaaggaaaatgaagatcgatgcagtcctaggcaccgcattgattgacatgtattctaaatgtgggcacattgagaagtctctagaggtcttctggcgaatgcaaggcagagatgccacagcttggactgccatcatctgtgggctggccacaaatggtcaggctggtagagctcttgaactgtttcaagatatgcagagaagtaaagttaagcccgacggtgttacgtttattggggtgctaagtgcatgctgccatggtggcttggttgatgaaggccggaagcagttccatgcaatgagggaggtttatcagatagaaccaagagttgaacactatagctgccttgtgaacctcctaggtcgtgctggtctactagatgaagctgagaggttgatcggtgacgttccaattaacaaggatgctatgccactgtttggtgcactcctcactgcttgcaaggctcatgggaatgttgagatgagtgaacggttaaccaaacgaatctgtgagcaagattcccaaattactgatgtgaatttgctcatgtctaatgtatatgcaacagcaagtagatgggaggatgtgataagggtacggggcaagatggcacaccctactgtcaagaagaatgcagggtgtagcttgattgaggtgaaggggtactga</cdnaseq>\|
−	AA = <aaseq>MAMAAARRGHGMPLWECNVLIRTLARRGSFARVMAVYYDLRARG LVADSFTYPFVLRAVGVLKLSVEGRKAHAAAVKTGFRWDAYTGSSLMEMYTMLGRVDI ARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVALSEQMERSGVTPDRVTLVTAVTAC SRARDLSLGRRIHVYMDNVFGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISW TILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQR VEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEK SLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGVLSAC CHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGLLDEAERLIGDVPINKDA MPLFGALLTACKAHGNVEMSERLTKRICEQDSQITDVNLLMSNVYATASRWEDVIRVR GKMAHPTVKKNAGCSLIEVKGY</aaseq>\|
−	DNA = <dnaseqindica>1..1593#atggcaatggcggcggcgaggaggggccacgggatgccgctctgggagtgcaacgtgctgatcaggacgctggcgaggcgggggagcttcgcgcgcgtcatggcggtgtactacgacctccgcgcgcggggactcgtggcggacagcttcacctacccgttcgtgctcagggccgtcggggtcctcaagctgtcggtcgaggggcgcaaggcgcacgcggccgctgtcaagaccgggttccggtgggacgcctacaccgggagctcgctgatggagatgtacacgatgctggggcgcgtggacatcgcgcggaaggtgttcgacgaaatgccgagtagggcgctggtgctgtggaacatgatggtcaggtgctacatcaggtgcgggtggtactcggcggcagttgctttgtctgaacagatggagagaagcggtgtcacacctgacagggtgacgttggtgacggcggtgacggcgtgctctagagcaagggacctgagcttgggaaggaggattcatgtgtacatggataacgtcttcggtttcaatctgccagttgcaaatgctctgctggacatgtacacgaagaatgattgcttggaagaggcggtgaaattgttcgagcaaatgcctgcgaggaacataatttcttggaccatacttgtgtcgggatatggccttgctgggcagctggacaaggccagagtgctcttcaaccagtgcaaagagaaggatctaattctgtggactgcaatgatcaatgcgtgtgtgcaacacggatgcttcgaggaggcgctgacattgttccgagatatgcagatgcaacgggttgagccagacaggttcactgttgtcactctcctgacatgctgtgccaatcttggcgctcttgatcaaggtgaatggattcaccagtatgctgaacaaaggaaaatgaagatcgatgcagtcctaggcaccgcattgattgacatgtattctaaatgtgggcacattgagaagtctctagaggtcttctggcgaatgcaaggcagagatgccacagcttggactgccatcatctgtgggctggccacaaatggtcaggctggtagagctcttgaactgtttcaagatatgcagagaagtaaagttaagcccgacggtgttacgtttattggggtgctaagtgcatgctgccatggtggcttggttgatgaaggccggaagcagttccatgcaatgagggaggtttatcagatagaaccaagagttgaacactatagctgccttgtgaacctcctaggtcgtgctggtctactagatgaagctgagaggttgatcggtgacgttccaattaacaaggatgctatgccactgtttggtgcactcctcactgcttgcaaggctcatgggaatgttgagatgagtgaacggttaaccaaacgaatctgtgagcaagattcccaaattactgatgtgaatttgctcatgtctaatgtatatgcaacagcaagtagatgggaggatgtgataagggtacggggcaagatggcacaccctactgtcaagaagaatgcagggtgtagcttgattgaggtgaaggggtactga</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064524.1 RefSeq:Os06g0597500]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 6]]~~
−	~~[[Category:~~Chromosome 6]]

← Older revision		Revision as of 20:25, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os06g0597500\|		GeneName = Os06g0597500\|