Os06g0662000 - Revision history

Rice2012: /* Structured Information */

2015-06-12T08:21:57Z

‎Structured Information

Zhangye: /* Expression */

2015-01-13T05:32:29Z

‎Expression

Zhangye at 05:29, 13 January 2015

2015-01-13T05:29:35Z

124.16.129.48 at 20:27, 22 July 2012

2012-07-22T20:27:19Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os06g0662000| Description = Similar to Vacuolar H+-ATPase subunit A (Fragment)| Version = NM_001064815.1 GI:115469361 GeneID:4341751| Length = 6..."

2012-06-24T09:30:09Z

Created page with "{{JaponicaGene| GeneName = Os06g0662000| Description = Similar to Vacuolar H+-ATPase subunit A (Fragment)| Version = NM_001064815.1 GI:115469361 GeneID:4341751| Length = 6..."

New page

{{JaponicaGene|
GeneName = Os06g0662000|
Description = Similar to Vacuolar H+-ATPase subunit A (Fragment)|
Version = NM_001064815.1 GI:115469361 GeneID:4341751|
Length = 6529 bp|
Definition = Oryza sativa Japonica Group Os06g0662000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
AP = Chromosome 6:28163322..28169850|
CDS = 28163626..28163740,28163837..28163925,28164957..28165035,28165143..28165240,28165503..28165607<br>,28165686..28165772,28165873..28166067,28166545..28166651,28167214..28167409<br>,28167520..28167621,28167755..28167826,28167907..28167963,28168059..28168160<br>,28168293..28168330,28168424..28168535,28168627..28168683,28168777..28168832<br>,28168938..28169064,28169636..28169704|
GCID = <gbrowseImage1>
name=NC_008399:28163322..28169850
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008399:28163322..28169850
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgtcgtacgatcgcgtcacgaccttcgaggactcggagaaggagagcgagtacggctacgtccgcaaggtttctggacctgtggtcgtggctgatggaatgggtggtgctgccatgtatgaacttgtccgagttggtaatgataacctcattggggaaattattcgtcttgagggtgattcagccaccattcaagtttatgaggaaacagctgggttgatggtcaatgatccagtgttgagaacaagaaagcctctttcagttgaattgggacctggtatccttggaaatatctttgatggaatccagcgccctctaaaaactattgctataaagtctggagatgtgtacataccacgtggtgtttcagtccctgctcttgacaaagatcagttgtgggattttgagccaaagaagctaggtgttggagatgccatcactggtggagatctatatgctactgtgtttgagaatacgctgatgaaacatcatgttgcccttcctcctggttctatggggaaaattagttacattgcaccagctggccagtatagcttgcaggatacagttctggaactggaattccagggcatcaaaaagcaatttactatgctccagacatggcctgtccggtcaccaaggcctgtttcatcaaagcttgctgctgacacgcctcttctaacaggacagcgtgtacttgatgcactatttccctcagttcttggaggaacttgtgctattcctggagcatttggttgtggaaaaactgtcattagtcaggcactttcaaagtactccaattctgaagctgtggtttatgtgggctgcggggaaagaggaaacgagatggctgaggtccttatggacttcccacaattgacaatgacattgcctgatggacgtgaagagtctgtcatgaaaagaactacacttgttgctaacacatccaacatgcctgttgctgctcgtgaagcctccatttatacaggaattacaattgctgaatacttccgtgacatgggctataatgtcagtatgatggctgattctacttctcggtgggctgaagctttgcgtgagatttcaggacgtctggctgaaatgcctgcggatagtggttaccctgcatatttggctgcacgtttggcatccttttacgaacgtgctggtaaggtgaaatgtctcggcagtccagatcggacaggcagtgtcacaattgttggtgctgtctctccacctggaggtgatttttcagatcctgttacctctgcaactcttagtattgtgcaggtcttttggggattggataagaagctggctcaaagaaagcatttcccatctgtcaattggctcatctcttactcaaaatactcaaaggctctggaatccttctatgagaagtttgatcaagatttcattgatattagaacaaaagctcgtgaagtgttacagagagaggacgatctaaatgaaattgtccagcttgttggtaaagatgcactggcagaatctgataagattacattggaaacagccaagctactaagggaagattacttggcacagaatgcatttaccccatatgacaagttctgtccattctacaagtctgtttggatgatgcgcaacattattcatttcaatacattagcaaatcaggctgtggagcgtgcagctaatgctgatggacaaaaaataacatacagtgtcataaagcatcgtatgggtgatctattttatcgcctagtatctcaaaagtttgaggaccctgcagagggtgaagatgtcctagtcgcaaaattccagaaattgtatgatgacctcacaaccggattccgcaacctagaagatgaagctaggtga</cdnaseq>|
AA = <aaseq>MSYDRVTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVR VGNDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTRKPLSVELGPGILGNIFDGI QRPLKTIAIKSGDVYIPRGVSVPALDKDQLWDFEPKKLGVGDAITGGDLYATVFENTL MKHHVALPPGSMGKISYIAPAGQYSLQDTVLELEFQGIKKQFTMLQTWPVRSPRPVSS KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSEAVVYVGC GERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA EYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKV KCLGSPDRTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNW LISYSKYSKALESFYEKFDQDFIDIRTKAREVLQREDDLNEIVQLVGKDALAESDKIT LETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFNTLANQAVERAANADGQKI TYSVIKHRMGDLFYRLVSQKFEDPAEGEDVLVAKFQKLYDDLTTGFRNLEDEAR</aaseq>|
DNA = <dnaseqindica>6111..6225#5926..6014#4816..4894#4611..4708#4244..4348#4079..4165#3784..3978#3200..3306#2442..2637#2230..2331#2025..2096#1888..1944#1691..1792#1521..1558#1316..1427#1168..1224#1019..1074#787..913#147..215#cgtcttccattccagcccagatcgagcgagagagccgtctccctcttcgcttctcctctcccccccgtgatctgaccgccggcgacgaccccctcccaccacccgccgccgccgccgcgcccccgcccccgccggcgacgaccaccatgtcgtacgatcgcgtcacgaccttcgaggactcggagaaggagagcgagtacggctacgtccgcaaggttccctcacccctcatcgtcttccttcctcttccccatgttggattggatcggtcactctcgtgcgtagatgcggcggcctctgcttcggattcggcttgttccggatcggtggagttttagctgtgagtctctgtggattttagtgctggtctcgaatccccgatcgcgagagtgtgggtggcactgctgctgactggggaatcgtcaggcgatgcgactgtgccgagagcctcggactcgggtggtgtttggatcgagttgaattgatgcgagattaggttgataggacggttgaatttaggtttctactggtgttcggatcacgctggctagactgcgtggatcgacgtttgatgcgttaacttccaaactcatatgcgggacactattgtgatggggttggttagtgaaccatccccgatgtggagatgcgctattatccttgggagtttagcccgtttggataatatgttgattgtctactattggcacatgatccatcatttcatccctcttttttttttttgtattgaacgaattgtttcgccttcatattgcattcttctaggtttctggacctgtggtcgtggctgatggaatgggtggtgctgccatgtatgaacttgtccgagttggtaatgataacctcattggggaaattattcgtcttgagggtgattcagccaccattcaaggtataggacggtgaaattctacctcacatatttgtggtgccttttccccacatgacatgtacaatataaatttcaccaattttttcttgtgattaccgtttgcagtttatgaggaaacagctgggttgatggtcaatgatccagtgttgagaacaagaaaggtgtgatgcattgttaaattctatgtgcatttcacatatggttttcttacccttttcatttcttttataacacattgttgctattttcatcagcctctttcagttgaattgggacctggtatccttggaaatatctttgatggaatccaggtgagacaaatgtaataatcggacatttattaggctgatatgaggactttatgctgactacatgaccttttttcctttctacactttgcagcgccctctaaaaactattgctataaagtctggagatgtgtacataccacgtggtgtttcagtccctgctcttgacaaagatcagttgtgggattttgagccaaagaagctaggtattgtgcctgctaacctgttataaaatctgagcatgtctcttttcaagttttatcctgtacatagataaattacattggtcatttgaataggtgttggagatgccatcactggtggagatctatatgctgtaagttaacaagacagttcccttttttacaagttattatcttgtgttattgctagcgatcttctgcaatctgcagatccctgatgatgttaatctttttatgtgtctttgtgttgcctaactgcctcacagactgtgtttgagaatacgctgatgaaacatcatgttgcccttcctcctggttctatggggaaaattagttacattgcaccagctggccagtatagcttgcaggttagtatgtgttacttaaagctgcttcttctgtgcctcatttttttttctgcttaactttatgtgatgtcctaatcataatgctctgtacacaggatacagttctggaactggaattccagggcatcaaaaagcaatttactatgctccaggcaaagtgctttccctttcattaaatccgtatttaccgagtttatgtatatctgaatgtcatcatatttattctctgcagacatggcctgtccggtcaccaaggcctgtttcatcaaagcttgctgctgacacgcctcttctaacaggacaggtacacgaagcttgctactcccagctccttcataatgtgttattttattagtgtcaaaatttaatgaagtgatgctttcctgtcctgttctatcatattttgccgtgtctcatatcctgtgaactgttttcagcgtgtacttgatgcactatttccctcagttcttggaggaacttgtgctattcctggagcatttggttgtggaaaaactgtcattagtcaggcactttcaaaggtattttcactattcctctctatttgataactgctagcattgcccatgggcattagccttttaaaatgactgaattctgtgcctttcctgactgaaaatatcttatgcagtactccaattctgaagctgtggtttatgtgggctgcggggaaagaggaaacgagatggctgaggtccttatggacttcccacaattgacaatgacattgcctgatggacgtgaagagtctgtcatgaaaagaactacacttgttgctaacacatccaacatgcctgttgctgctcgtgaagcctccatttatacaggtaatacatatatactgattactgatgtttttaatttcgcattccactagtatagtactacatgaatgtgtttcgatcttctgaagttcattttctctagaagaaagtgttgctttgttggagactatagctatctcaatacatcagaccatggatttctgcaggcttgtccttagccatttgtgatctatgagctaattttggaataactaaggttgcattgacaaatacatctatgcatgttccataattgttcagtagaacattgaggatcacatctttatgttatccatggcctttattatttattgaggatatacacatattcctgttagccatgacctgtattacttactaactgttctgttgcagttcagtttatgagttatgacggatggtaactaacttgctagcactagatcttttagtgaatgaacatcatcaaagtggtacaatatgtgtagtttcttgtagaacactaaaaggagtccttgcttagttatgctttatgcctgatgttttctttatcaacaaaacaatcatatttttttctgcccaccaggaattacaattgctgaatacttccgtgacatgggctataatgtcagtatgatggctgattctacttctcggtgggctgaagctttgcgtgagatttcaggacgtctggtatgatgcttcctttcgagttgctattttacctttttggcctgtatttttgtaacttatattgacttctcaatgctgtgctgtgacatgaatgagaattctttctaatgtatcattatccactatttgtatttggggtttaattttttcaggattattgtttattttctttccgttcagtagcttattttattactaatttcattaatagctgactgtaccctccaacatcaagaatactagtgcaatggggatatattaatgtgttgaacagaagtaaaatctgttactagtacatcatgcatgaaacatttacatggaagttatcatatacgtctgatgcatcgtgcttgaaatatttactatgcagttatcttactaggaaattatttggagtcgaaagtgctctcgctagctagttactgctttactctgcactaatatgaatttgaaactgatgatttgatcaatttccaggctgaaatgcctgcggatagtggttaccctgcatatttggctgcacgtttggcatccttttacgaacgtgctggtaaggtgaaatgtctcggcagtccagatcggacaggcagtgtcacaattgttggtgctgtctctccacctggaggtgatttttcagatcctgttacctctgcaactcttagtattgtgcaggtaaggaaactgctagattaatccaacctttgaattaaattttcaaacctttctaactgcatgttcattgtttgataatcttaactcctctcaattgcaggtcttttggggattggataagaagctggctcaaagaaagcatttcccatctgtcaattggctcatctcttactcaaaatactcaaaggttattcctaacttccctatgatgtcaatacaattaaaatcgccattttacactaacatactatatcctgtactgtaggctctggaatccttctatgagaagtttgatcaagatttcattgatattagaacaaaagctcgtgaagtgttacagagagaggacgatctaaatgaaattgtccaggtattttttttcaccttgtgcaaggatgatctgttccctagatttagtcgtagaagcaatagtttgaacttggaccacttaaacatggtgtttttgttttccaaggtcctcctttttggtctttcacaatatttgttttcttcattagatttggagtttctcaaactattcaatttgtattttattgatatttgttgacccttcttgctttgtgtaatattattgtggcaccatttggcctaatatcttcaccaaatttcagcttgttggtaaagatgcactggcagaatctgataagattacattggaaacagccaagctactaagggaagattacttggcacagaatgcatttaccccgtgagtcataccctagttttttctgatttaatacagatttattggttgtctctattttaatgattaaccattttctttagtctgatcatctctatataatgaaacagatatgacaagttctgtccattctacaagtctgtttggatgatgcgcaacattattcatttcaatacattagcaaatcaggtaaatctaacgtgtttttaccactcctttcgtccttgaaccttaaattactcaagcaactttgatttgaaatttgaagtatgaacctgtgaagaatgttttctatagcattagtaagattgatcttgttttgaagttttttattgcttatgacaattttctttttaccaatgtggattgaaatattgttgtttttttgctacatgatctaggagcttattggattaattatttgatgtttcttgcatggaactgataaatataccgtgctttactcctatcatgaactgtgttgtgatatatgtcttaaatatcaatgagccatgctcattatctttaggaggctagccctaaacaaaaaacattaaagcactaaccctgggtattggcaccaatcgcacagatcctcagccaaacagaattctcacattaaaagttgattaaaaataatggcttcgcttacttaaccccagttctgttgcattcttgcatccactctcactagctcccttggttggcttcgatgctagtgtgctaatgcctaagggttcaccatgacattgtgttcatatgtccacctcaactgagtcagcaagggcaagttaaaaggatttgggtttaagggaaccatttttgctcaaattcctctggttgaatgaaagtgtgtgacttctttatttttttctttttttttggcaattggtgcacaaactactaggtgctagggctaagtgtaaactcgaaaagctttggctagacttgcaacgggctgaagtttatataatgattatgtcaataagaaaagttaccaagcaaatacttgatatttattcacctagttttagagaaggtatgtagcaagtagcaatatcctttagttaattgtgatgtatgaactttcttgtaagactcatctgatatctgcactattttcttttgctggaaagaaacttatagtattcataagtgaatgtagcttgtttgaatccatcataccttaacaaattgtatgtttctgtcttgtcttgtaggctgtggagcgtgcagctaatgctgatggacaaaaaataacatacagtgtcataaagcatcgtatgggtgatctattttatcgcctagtgtaagtatttcagttccatacctcaaatggtgaccatttgattggttttattttcattggtaatcctgtttgctgaatacttcactcttgcaacagatctcaaaagtttgaggaccctgcagagggtgaagatgtcctagtcgcaaaattccagaaattgtatgatgacctcacaaccggattccgcaacctagaagatgaagctaggtgaagtgctgtaaattgaggatcacattcgtgtaaacaataaaatatcaccagatattcgaagcgagttggggcaatttattttgcttcgcgtgaggttgtagatgtgaattacgtttcagaatcatcatattttccttctgcatcgacactgctgctgctttttgtagcttcctgtttgacctccggtgctcgatgaaggcattctttttggtgtacaattatttatattgtaagatacctgtgcacatgttgatagttgaataagcacgatgaccatctacttgaacatcatatatttttctccc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064815.1 RefSeq:Os06g0662000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 6]]
[[Category:Chromosome 6]]

@@ Line 32: / Line 32: @@
 ===Expression===
-*Differential expression levels of ''OsVHAA'' gene were detected in root, stem, leaf, flower and internode from the mature rice plant. The result indicated ''OsVHA-A'' was expressed constitutively, with greater expression abundance in leaf and flower. Heterologous expression of ''OsVHA-A'' appears to partially complement the defective V-ATPase activity in the yeast ''vma1△'' mutant<ref name="ref1"/><ref name="ref2"/>.
+*Differential expression levels of ''OsVHA-A'' gene were detected in root, stem, leaf, flower and internode from the mature rice plant. The result indicated ''OsVHA-A'' was expressed constitutively, with greater expression abundance in leaf and flower. Heterologous expression of ''OsVHA-A'' appears to partially complement the defective V-ATPase activity in the yeast ''vma1△'' mutant<ref name="ref1"/><ref name="ref2"/>.
 *Knockdown of ''OsVHA-A'' Promotes the H<sup>+</sup> Efflux by Increasing Plasma Membrane H<sup>+</sup>-ATPase Activity. Knockdown of ''OsVHA-A'' leads to remarkably increased stomatal aperture and density<ref name="ref1"/>.

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+A rice (''Oryza sativa L.'') vacuolar H+ -ATPase subunit A (''OsVHA-A'') gene plays an important role in the regulation of stomatal movement and determination of stomatal density<ref name="ref1"/>.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+[[File:OsVHA-A model.jpg|right|thumb|300px|'''Figure 1.''' ''Schematical model of OsVHA-A-RNAi in the regulation of stomatal aperture.(from reference <ref name="ref1"/>).'']]
 ===Expression===
-Please input expression information here.
+*Differential expression levels of ''OsVHAA'' gene were detected in root, stem, leaf, flower and internode from the mature rice plant. The result indicated ''OsVHA-A'' was expressed constitutively, with greater expression abundance in leaf and flower. Heterologous expression of ''OsVHA-A'' appears to partially complement the defective V-ATPase activity in the yeast ''vma1△'' mutant<ref name="ref1"/><ref name="ref2"/>.
 ===Evolution===
-Please input evolution information here.
+[[File: OsVHA-A Phylogenetic1.jpg|right|thumb|300px|'''Figure 2.''' ''Phylogenetic analysis of OsVHA-A homologues.(from reference <ref name="ref1"/>).'']]
-You can also add sub-section(s) at will.
+Subunit A, the critical component of V-ATPase protein complex, contains an ATP-binding region and may represent a catalytic reaction center<ref name="ref6"/>. The transcript level of subunit A of V-ATPase has been shown previously to be induced by salt and osmotic stresses in Arabidopsis and barley<ref name="ref7"/><ref name="ref8"/>.
 ==Labs working on this gene==
-Please input related labs here.
+*School of Life Science, Chongqing University, Chongqing, China
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==

← Older revision		Revision as of 20:27, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os06g0662000\|		GeneName = Os06g0662000\|

@@ Line 87: / Line 87: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]