Os06g0677000 - Revision history

Liman: /* Mutation */

2016-12-10T12:40:42Z

‎Mutation

Liman at 12:40, 10 December 2016

2016-12-10T12:40:26Z

Liman: /* Labs working on this gene */

2016-12-10T12:35:09Z

‎Labs working on this gene

Liman at 12:34, 10 December 2016

2016-12-10T12:34:42Z

Liman at 13:34, 15 October 2016

2016-10-15T13:34:13Z

192.168.72.52 at 09:03, 14 May 2015

2015-05-14T09:03:58Z

124.16.129.48 at 20:27, 22 July 2012

2012-07-22T20:27:46Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os06g0677000| Description = Patatin family protein| Version = NM_001064889.2 GI:297606353 GeneID:4341835| Length = 1770 bp| Definition = Oryza ..."

2012-06-24T09:31:20Z

Created page with "{{JaponicaGene| GeneName = Os06g0677000| Description = Patatin family protein| Version = NM_001064889.2 GI:297606353 GeneID:4341835| Length = 1770 bp| Definition = Oryza ..."

New page

{{JaponicaGene|
GeneName = Os06g0677000|
Description = Patatin family protein|
Version = NM_001064889.2 GI:297606353 GeneID:4341835|
Length = 1770 bp|
Definition = Oryza sativa Japonica Group Os06g0677000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
AP = Chromosome 6:28986238..28988007|
CDS = 28986238..28986519,28986844..28986906,28987000..28988007|
GCID = <gbrowseImage1>
name=NC_008399:28986238..28988007
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008399:28986238..28988007
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgccgcgagcgaggaagaagacgaccaagccggagcacccacctcagcttctcagcttcagcttcgcttcgctacagaaaagcatctcggaaaagccaagaaccaaacggctcagctctacgtcgcgtttgctaatggcgacaacctcctcgctcgcgctgccgctgttcgccggcggcggcggctccgaccgcctcagccaggagatcttctccatcctcgagtccaacttcctcttcggcgcgccgccgccggaggggcctgcaggttactactcctccgttggccgcgtccgcgtgctctcgattgatggcggcgccgacggcggcgcgctcgccgcggccgcgctggtccgcctcgagcgccggcttaaggagctctccgggaaccccgatgcccgcgtcgccgactactttgacctggcggccggctccggcgccggcgggttcctcgccgccgcgttgttcgcatgccggatgccggcggaggcggcgcgcgacgtcgttgccaggaaccggaaggtgttctccggccgccgtgggcgggggggtggcctgttctggaggccggagtcggtgttcaagaaggtgttcggcgacctgacggtgagggacgccgccaagccgctgctgataccctgctacgacatggcgacggcggcgccgttcgtcttctcccgcgccgacgccgtcgaggccgacgcgttcgacttcccgctgtggcaggtctgcgccgcggcgtgcggcgtgggccccgccgaggtcgcctccctcgacggccggaccaggctccgcgccgcggcggccacgggcggcggcggcgccgtgtccaacccggccgcggtggccgtcacccacgtgctccacaacaagcgcgagttccccttcgccgccggcgccggcgacctcgtcgtgctgtccctcggcgggaacaacgccgccgccggcccccgcgcgtcgtcgtcgagcctcctgcgcatcgccggagcttgccaggccgacatggtggaccaagctgtatcaatggcgttcggcgagtgcagggcaaccaactacatccgtatccagggcaatggcattgtggccggagcggcggcggcgacggcggaggcggcgatgacggagaggagcgtggagtcggtgctgttcagggggaagaaggtgatggcgcagacgaacggcgagcggctggacggcgtggcggagcagctggtgagggagcaccaccggaggatggagagcaaggcgccggtggtgctcatcaagccgtcggcgacgccgcggacgtcgtcgtcgtcggcgtccacgctcatcaccgtctccaccaacgcctcgtccgagtcgccatga</cdnaseq>|
AA = <aaseq>MAPRARKKTTKPEHPPQLLSFSFASLQKSISEKPRTKRLSSTSR LLMATTSSLALPLFAGGGGSDRLSQEIFSILESNFLFGAPPPEGPAGYYSSVGRVRVL SIDGGADGGALAAAALVRLERRLKELSGNPDARVADYFDLAAGSGAGGFLAAALFACR MPAEAARDVVARNRKVFSGRRGRGGGLFWRPESVFKKVFGDLTVRDAAKPLLIPCYDM ATAAPFVFSRADAVEADAFDFPLWQVCAAACGVGPAEVASLDGRTRLRAAAATGGGGA VSNPAAVAVTHVLHNKREFPFAAGAGDLVVLSLGGNNAAAGPRASSSSLLRIAGACQA DMVDQAVSMAFGECRATNYIRIQGNGIVAGAAAATAEAAMTERSVESVLFRGKKVMAQ TNGERLDGVAEQLVREHHRRMESKAPVVLIKPSATPRTSSSSASTLITVSTNASSESP </aaseq>|
DNA = <dnaseqindica>1489..1770#1102..1164#1..1008#atggcgccgcgagcgaggaagaagacgaccaagccggagcacccacctcagcttctcagcttcagcttcgcttcgctacagaaaagcatctcggaaaagccaagaaccaaacggctcagctctacgtcgcgtttgctaatggcgacaacctcctcgctcgcgctgccgctgttcgccggcggcggcggctccgaccgcctcagccaggagatcttctccatcctcgagtccaacttcctcttcggcgcgccgccgccggaggggcctgcaggttactactcctccgttggccgcgtccgcgtgctctcgattgatggcggcgccgacggcggcgcgctcgccgcggccgcgctggtccgcctcgagcgccggcttaaggagctctccgggaaccccgatgcccgcgtcgccgactactttgacctggcggccggctccggcgccggcgggttcctcgccgccgcgttgttcgcatgccggatgccggcggaggcggcgcgcgacgtcgttgccaggaaccggaaggtgttctccggccgccgtgggcgggggggtggcctgttctggaggccggagtcggtgttcaagaaggtgttcggcgacctgacggtgagggacgccgccaagccgctgctgataccctgctacgacatggcgacggcggcgccgttcgtcttctcccgcgccgacgccgtcgaggccgacgcgttcgacttcccgctgtggcaggtctgcgccgcggcgtgcggcgtgggccccgccgaggtcgcctccctcgacggccggaccaggctccgcgccgcggcggccacgggcggcggcggcgccgtgtccaacccggccgcggtggccgtcacccacgtgctccacaacaagcgcgagttccccttcgccgccggcgccggcgacctcgtcgtgctgtccctcggcgggaacaacgccgccgccggcccccgcgcgtcgtcgtcgagcctcctgcgcatcgccggagcttgccaggccgacatggtacgccataattctcgtgcatttccctctgcaaggacaattaattgtaccccgcgtcgcgtcgcttacccgacggtgtctgcgccttttcaggtggaccaagctgtatcaatggcgttcggcgagtgcagggcaaccaactacatccgtatccaggtaaaaacataaaaaaaaatcttacaattctacacctacttattactaccagccaagaactgcaagggctaaatttaaccaaatttattgaaaaatataacaatatttttaacataaaacaaatatattgtaaaaatatatttaatattatatttaataaaactaatttggtattacagatattgctgaatttttctataaattcagttaaaccaaaagaggttgtagtaagaaaagaattaaaacgacttgtaattagagagtaaagtacgaggcaagaactgcaagggctaactcctctctctgcttcgttttcatcttcagggcaatggcattgtggccggagcggcggcggcgacggcggaggcggcgatgacggagaggagcgtggagtcggtgctgttcagggggaagaaggtgatggcgcagacgaacggcgagcggctggacggcgtggcggagcagctggtgagggagcaccaccggaggatggagagcaaggcgccggtggtgctcatcaagccgtcggcgacgccgcggacgtcgtcgtcgtcggcgtccacgctcatcaccgtctccaccaacgcctcgtccgagtcgccatga</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064889.2 RefSeq:Os06g0677000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 6]]
[[Category:Chromosome 6]]

@@ Line 11: / Line 11: @@
 ===Mutation===
-[[File:Os06g0677000-1.png|right|thumb|400px|'''Fig. 1 Phenotype of the dep3 mutant.''' '' <ref name="ref1" />.'']]
+[[File:Os06g0677000-1.png|right|thumb|200px|'''Fig. 1 Phenotype of the dep3 mutant.''' '' <ref name="ref1" />.'']]
 * The panicle of the dep3 mutant remained erect from flowering to full maturation, whereas the panicle of the wild type plant began to droop after flowering. The dep3 mutation also regulated other panicle characteristics, including panicle length, grain shape and grain number per panicle. Anatomical observations revealed that the dep3 mutant had more small vascular bundles and a thicker culm than wild type plants, explaining the EP phenotype.

@@ Line 6: / Line 6: @@
 ===Function===
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+* The '''''DEP3''''' gene was identified as the candidate via a map-based cloning approach and was predicted to encode a patatin-like phospholipase A2 (PLA2) superfamily domain-containing protein.
 ===Mutation===
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+[[File:Os06g0677000-1.png|right|thumb|400px|'''Fig. 1 Phenotype of the dep3 mutant.''' '' <ref name="ref1" />.'']]
 ===Expression ===
 ===Evolution===

@@ Line 20: / Line 20: @@
 ==Labs working on this gene==
 * Department of Plant Science, Research Institute of Agriculture and Life Sciences, Plant Genomics and Breeding Institute, Seoul National University, Seoul 151-921, Korea
-*Key Laboratory of Crop Germplasm Resources and
+*Key Laboratory of Crop Germplasm Resources and Biotechnology, Ministry of Agriculture, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China
-Biotechnology, Ministry of Agriculture, Institute of Crop
+*Department of Plant Pathology and Microbiology, Institute for Integrative Genomic Biology, University of California, Riverside, CA 92521, USA
 Science, Chinese Academy of Agricultural Sciences,
 ==References==
 <references>

@@ Line 1: / Line 1: @@
-The rice gene  was reported as '''''''''' in 20<ref name="ref1" /> by researchers from China and Japan.
+The rice gene Os06g0677000 was reported as '''''dep3''''' in 2011<ref name="ref1" /> by researchers from Korea, China and USA.
 ==Annotated Information==
 ===Gene Symbol===
-*''''' <=>
+*'''''Os06g0677000 <=> dep3, OspPLAIIIdelta, pPLAIIIdelta
 ===Function===
@@ Line 19: / Line 19: @@
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
+* Department of Plant Science, Research Institute of Agriculture and Life Sciences, Plant Genomics and Breeding Institute, Seoul National University, Seoul 151-921, Korea
 ==References==
 <references>
 * <ref name="ref1">
+Qiao Y, Piao R, Shi J, Lee SI, Jiang W, Kim BK, Lee J, Han L, Ma W, Koh HJ.
 </ref>
 </references>

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice gene  was reported as '''''''''' in 20<ref name="ref1" /> by researchers from China and Japan.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
 ===Evolution===
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]

← Older revision		Revision as of 09:03, 14 May 2015
Line 20:		Line 20:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]
−	~~GeneName = Os06g0677000\|~~
−	~~Description = Patatin family protein\|~~
−	~~Version = NM_001064889.2 GI:297606353 GeneID:4341835\|~~
−	~~Length = 1770 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os06g0677000, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 6\|Chromosome 6]]\|~~
−	~~AP = Chromosome 6:28986238..28988007\|~~
−	~~CDS = 28986238..28986519,28986844..28986906,28987000..28988007\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008399:28986238..28988007~~
−	~~source=RiceChromosome06~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008399:28986238..28988007~~
−	~~source=RiceChromosome06~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atggcgccgcgagcgaggaagaagacgaccaagccggagcacccacctcagcttctcagcttcagcttcgcttcgctacagaaaagcatctcggaaaagccaagaaccaaacggctcagctctacgtcgcgtttgctaatggcgacaacctcctcgctcgcgctgccgctgttcgccggcggcggcggctccgaccgcctcagccaggagatcttctccatcctcgagtccaacttcctcttcggcgcgccgccgccggaggggcctgcaggttactactcctccgttggccgcgtccgcgtgctctcgattgatggcggcgccgacggcggcgcgctcgccgcggccgcgctggtccgcctcgagcgccggcttaaggagctctccgggaaccccgatgcccgcgtcgccgactactttgacctggcggccggctccggcgccggcgggttcctcgccgccgcgttgttcgcatgccggatgccggcggaggcggcgcgcgacgtcgttgccaggaaccggaaggtgttctccggccgccgtgggcgggggggtggcctgttctggaggccggagtcggtgttcaagaaggtgttcggcgacctgacggtgagggacgccgccaagccgctgctgataccctgctacgacatggcgacggcggcgccgttcgtcttctcccgcgccgacgccgtcgaggccgacgcgttcgacttcccgctgtggcaggtctgcgccgcggcgtgcggcgtgggccccgccgaggtcgcctccctcgacggccggaccaggctccgcgccgcggcggccacgggcggcggcggcgccgtgtccaacccggccgcggtggccgtcacccacgtgctccacaacaagcgcgagttccccttcgccgccggcgccggcgacctcgtcgtgctgtccctcggcgggaacaacgccgccgccggcccccgcgcgtcgtcgtcgagcctcctgcgcatcgccggagcttgccaggccgacatggtggaccaagctgtatcaatggcgttcggcgagtgcagggcaaccaactacatccgtatccagggcaatggcattgtggccggagcggcggcggcgacggcggaggcggcgatgacggagaggagcgtggagtcggtgctgttcagggggaagaaggtgatggcgcagacgaacggcgagcggctggacggcgtggcggagcagctggtgagggagcaccaccggaggatggagagcaaggcgccggtggtgctcatcaagccgtcggcgacgccgcggacgtcgtcgtcgtcggcgtccacgctcatcaccgtctccaccaacgcctcgtccgagtcgccatga</cdnaseq>\|
−	AA = <aaseq>MAPRARKKTTKPEHPPQLLSFSFASLQKSISEKPRTKRLSSTSR LLMATTSSLALPLFAGGGGSDRLSQEIFSILESNFLFGAPPPEGPAGYYSSVGRVRVL SIDGGADGGALAAAALVRLERRLKELSGNPDARVADYFDLAAGSGAGGFLAAALFACR MPAEAARDVVARNRKVFSGRRGRGGGLFWRPESVFKKVFGDLTVRDAAKPLLIPCYDM ATAAPFVFSRADAVEADAFDFPLWQVCAAACGVGPAEVASLDGRTRLRAAAATGGGGA VSNPAAVAVTHVLHNKREFPFAAGAGDLVVLSLGGNNAAAGPRASSSSLLRIAGACQA DMVDQAVSMAFGECRATNYIRIQGNGIVAGAAAATAEAAMTERSVESVLFRGKKVMAQ TNGERLDGVAEQLVREHHRRMESKAPVVLIKPSATPRTSSSSASTLITVSTNASSESP </aaseq>\|
−	DNA = <dnaseqindica>1489..1770#1102..1164#1..1008#atggcgccgcgagcgaggaagaagacgaccaagccggagcacccacctcagcttctcagcttcagcttcgcttcgctacagaaaagcatctcggaaaagccaagaaccaaacggctcagctctacgtcgcgtttgctaatggcgacaacctcctcgctcgcgctgccgctgttcgccggcggcggcggctccgaccgcctcagccaggagatcttctccatcctcgagtccaacttcctcttcggcgcgccgccgccggaggggcctgcaggttactactcctccgttggccgcgtccgcgtgctctcgattgatggcggcgccgacggcggcgcgctcgccgcggccgcgctggtccgcctcgagcgccggcttaaggagctctccgggaaccccgatgcccgcgtcgccgactactttgacctggcggccggctccggcgccggcgggttcctcgccgccgcgttgttcgcatgccggatgccggcggaggcggcgcgcgacgtcgttgccaggaaccggaaggtgttctccggccgccgtgggcgggggggtggcctgttctggaggccggagtcggtgttcaagaaggtgttcggcgacctgacggtgagggacgccgccaagccgctgctgataccctgctacgacatggcgacggcggcgccgttcgtcttctcccgcgccgacgccgtcgaggccgacgcgttcgacttcccgctgtggcaggtctgcgccgcggcgtgcggcgtgggccccgccgaggtcgcctccctcgacggccggaccaggctccgcgccgcggcggccacgggcggcggcggcgccgtgtccaacccggccgcggtggccgtcacccacgtgctccacaacaagcgcgagttccccttcgccgccggcgccggcgacctcgtcgtgctgtccctcggcgggaacaacgccgccgccggcccccgcgcgtcgtcgtcgagcctcctgcgcatcgccggagcttgccaggccgacatggtacgccataattctcgtgcatttccctctgcaaggacaattaattgtaccccgcgtcgcgtcgcttacccgacggtgtctgcgccttttcaggtggaccaagctgtatcaatggcgttcggcgagtgcagggcaaccaactacatccgtatccaggtaaaaacataaaaaaaaatcttacaattctacacctacttattactaccagccaagaactgcaagggctaaatttaaccaaatttattgaaaaatataacaatatttttaacataaaacaaatatattgtaaaaatatatttaatattatatttaataaaactaatttggtattacagatattgctgaatttttctataaattcagttaaaccaaaagaggttgtagtaagaaaagaattaaaacgacttgtaattagagagtaaagtacgaggcaagaactgcaagggctaactcctctctctgcttcgttttcatcttcagggcaatggcattgtggccggagcggcggcggcgacggcggaggcggcgatgacggagaggagcgtggagtcggtgctgttcagggggaagaaggtgatggcgcagacgaacggcgagcggctggacggcgtggcggagcagctggtgagggagcaccaccggaggatggagagcaaggcgccggtggtgctcatcaagccgtcggcgacgccgcggacgtcgtcgtcgtcggcgtccacgctcatcaccgtctccaccaacgcctcgtccgagtcgccatga</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064889.2 RefSeq:Os06g0677000]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 6]]~~
−	~~[[Category:~~Chromosome 6]]

← Older revision		Revision as of 20:27, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os06g0677000\|		GeneName = Os06g0677000\|