Os06g0704300 - Revision history

Zhennan at 04:00, 28 March 2017

2017-03-28T04:00:10Z

Guangyi: /* Annotated Information */

2016-11-08T15:00:23Z

‎Annotated Information

Guangyi: /* Expression */

2016-11-08T14:59:15Z

‎Expression

Guangyi: /* Expression */

2016-11-08T14:56:54Z

‎Expression

Guangyi: /* Function */

2016-11-08T14:56:29Z

‎Function

Guangyi at 14:52, 8 November 2016

2016-11-08T14:52:51Z

Guangyi: /* Labs working on this gene */

2016-11-08T14:51:26Z

‎Labs working on this gene

Guangyi at 14:51, 8 November 2016

2016-11-08T14:51:03Z

192.168.72.52 at 09:05, 14 May 2015

2015-05-14T09:05:40Z

124.16.129.48 at 20:28, 22 July 2012

2012-07-22T20:28:47Z

@@ Line 1: / Line 1: @@
-The rice '''Os06g0704300''' was reported as '''	OsLIC''' in 2008 <ref name="ref1" /> by researchers from the China.
+The rice '''''Os06g0704300''''' was reported as '''''OsC3H46''''' in 2012 <ref name="ref1" /> by researchers from China.
 ==Annotated Information==
 ===Gene Symbol===
-*'''Os06g0704300 <=> 	OsLIC'''
+*'''''Os06g0704300''''' '''''<=>''''' '''''OsC3H46'''''
 ===Function===
-*OsLIC encoded an ancestral and unique CCCH type zinc finge protein.
+* Genes in the CCCH family encode zinc finger proteins containing the motif with three cysteines and one histidine residues.  <ref name="ref1" /> <ref name="ref2" />
-*OsLIC may be a transcription activator to control rice plant architecture.
+* CCCH-type zinc finger proteins have essential functions in various developmental processes in plants.
-<br>
+* CCCH family genes have been known to play important roles in RNA processing as RNA-binding proteins.
+* CCCH-type zinc finger proteins are RNA-binding proteins by virtue of the ability of their defining motif to directly bind to RNA, whereas most of the other zinc finger families are confirmed as DNA-binding or protein-binding proteins.
 ===Expression===
-*Suppression of endogenous OsLIC expression resulted in drastically increased leaf and tiller angles, shortened shoot height, and consequently reduced grain production in rice.
+* The expression profile indicated that most members of this subfamily are regulated by abiotic or biotic stresses, suggesting that they could have an effective role in stress tolerance.
-*OsLIC is predominantly expressed in rice collar and tiller bud.
+===Evolution===
-<br>
+* A typical CCCH protein usually contains 1–6 CCCH-type zinc finger motifs.
+* Based on the different numbers of amino acid spacers between cysteines and histidines in the CCCH motif, a consensus sequence for these  was defined as C-X 4–15 -C-X 4–6 -C-X 3 -H (X represents any amino acid) based on the whole-genome analysis of rice and Arabidopsis CCCH proteins <ref name="ref1" /> <ref name="ref2" />
 ==Labs working on this gene==
-*Key Laboratory of Photosynthesis and Environmental Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, and National Centre for Plant Gene Research, Beijing, China,
+* State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, Shandong 271018, P.R. China
 ==References==
 <references>
-<ref name="ref1">
+* <ref name="ref1">
-OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling
+Wang D, Guo Y, Wu C, Yang G, Li Y, Zheng C. Genome-wide analysis of CCCH zinc
 </ref>
 </references>
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]

@@ Line 7: / Line 7: @@
 ===Function===
 *OsLIC encoded an ancestral and unique CCCH type zinc finge protein.
 <br>
@@ Line 13: / Line 14: @@
 *OsLIC is predominantly expressed in rice collar and tiller bud.
 <br>
 ==Labs working on this gene==

@@ Line 11: / Line 11: @@
 ===Expression===
 *Suppression of endogenous OsLIC expression resulted in drastically increased leaf and tiller angles, shortened shoot height, and consequently reduced grain production in rice.
 <br>

@@ Line 10: / Line 10: @@
 ===Expression===
-Please input expression information here.
+*Suppression of endogenous OsLIC expression resulted in drastically increased leaf and tiller angles, shortened shoot height, and consequently reduced grain production in rice.
 ===Evolution===

@@ Line 6: / Line 6: @@
 <br>
 ===Function===
-Please input function information here.
+*OsLIC encoded an ancestral and unique CCCH type zinc finge protein.
 ===Expression===

← Older revision		Revision as of 09:05, 14 May 2015
Line 20:		Line 20:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]
−	~~GeneName = Os06g0704300\|~~
−	~~Description = Zinc finger, CCCH-type domain containing protein\|~~
−	~~Version = NM_001065042.1 GI:115469815 GeneID:4341994\|~~
−	~~Length = 3620 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os06g0704300, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 6\|Chromosome 6]]\|~~
−	~~AP = Chromosome 6:30615882..30619501\|~~
−	CDS = 30616100..30616143,30616261..30616495,30616598..30616686,30616773..30616871,30616968..30617061<br>,30617200..30617417,30617764..30617870,30618201..30618375,30618499..30618562<br>,30618931..30618978\|
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008399:30615882..30619501~~
−	~~source=RiceChromosome06~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008399:30615882..30619501~~
−	~~source=RiceChromosome06~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atgagtcggcggcaggagatttgccgcaacttccagcgcggaagttgcaagtacggagcgcagtgcaggtatttgcatgcctcccctcaccagcaacagcagcagcagcaggcgaagcccaacccgtttggatttggcaccggaagcaggcagcagcagcagccgtcatttggctcacagttccagcagcagcaacagcagcagcagaagcccaatccttttggttttggggtacaaggtgccaatgcccagtcacgtaatgctcctggtcctgcgaagccttttcaaaataagtgggtaagggacccctcggccccgacgaagcaaacagaggcggtgcagccaccgcaggcgcaggctgcccacacctcctgtgaagaccctcagtcatgcagacaacaaatttctgaggattttaagaacgaggctcctatttggaagcttacttgttatgctcatctcagaaatggcccttgcaatattaagggagacattagcttcgaggaactaagagctaaagcctatgaggaaggaaagcaagggcattctctgcaatcaatagttgagggagaaagaaatctacaaaacgcaaagttaatggagtttactaatctgctcaatagtgcacgtccatcacaaactccaagctttcctactatgagttccttccctgaagtgaaaaacaactcatcattcggggcttctcaaaccaatggaccacctgtgttcagtagtttcagtcaaattggagcagcaactaatattggacctgggccaggaaccaccgcaccaggaatgccagccagtagtccttttggtcatccaagctctgcaccacttgctgcccctacttttggcagttctcaaatgaagtttggagtttcgagcgtatttggaaaccagggttcaggtcaaccatttgggagctttcaagccccacgttttcccagttcgaagtctcctgcttcctctgtccagcacagagacattgataggcaatcacaagagttgcttaatgggatggtaactcctcctagtgtgatgtttgaggaatctgttgggaacaacaaaaatgaaaatcaggatgatagcatctggttgaaggaaaaatgggcaattggggagataccgctggatgaaccacctcagaggcacgttagccatgtgttttaa</cdnaseq>\|
−	AA = <aaseq>MSRRQEICRNFQRGSCKYGAQCRYLHASPHQQQQQQQAKPNPFG FGTGSRQQQQPSFGSQFQQQQQQQQKPNPFGFGVQGANAQSRNAPGPAKPFQNKWVRD PSAPTKQTEAVQPPQAQAAHTSCEDPQSCRQQISEDFKNEAPIWKLTCYAHLRNGPCN IKGDISFEELRAKAYEEGKQGHSLQSIVEGERNLQNAKLMEFTNLLNSARPSQTPSFP TMSSFPEVKNNSSFGASQTNGPPVFSSFSQIGAATNIGPGPGTTAPGMPASSPFGHPS SAPLAAPTFGSSQMKFGVSSVFGNQGSGQPFGSFQAPRFPSSKSPASSVQHRDIDRQS QELLNGMVTPPSVMFEESVGNNKNENQDDSIWLKEKWAIGEIPLDEPPQRHVSHVF</aaseq>\|
−	DNA = <dnaseqindica>219..262#380..614#717..805#892..990#1087..1180#1319..1536#1883..1989#2320..2494#2618..2681#3050..3097#actactccggccggcggccgcgtctcgagttctcggcggaggcggcaagccggcgagggcaacccacccaccgacgtcgtgcggccgcgcttgctgcgtcgcgtgcccacgccaatcccgtggcggcggaaggaggaggagcaagcgcttgggaggagctaaaccctagaggcggagctctagaatcgaatccccccccttccttccgctttgcggcgatgagtcggcggcaggagatttgccgcaacttccagcgcggaaggtaccggatcccccccctctctcatctctctcagtgagaactacgccatcgattgattacccagccattgattcgagtttttgatttgcaatgcttgtttctgaatgatgcgtgcagttgcaagtacggagcgcagtgcaggtatttgcatgcctcccctcaccagcaacagcagcagcagcaggcgaagcccaacccgtttggatttggcaccggaagcaggcagcagcagcagccgtcatttggctcacagttccagcagcagcaacagcagcagcagaagcccaatccttttggttttggggtacaaggtgccaatgcccagtcacgtaatgctcctggtcctgcgaaggtttgtcagcgctaatcagaacaaaggaaattcttcaattgcagtgtttttccatgtataggaatgtgttgtgtatgactaataaagaaattgttgaatcagccttttcaaaataagtgggtaagggacccctcggccccgacgaagcaaacagaggcggtgcagccaccgcaggcgcaggctgcccacacgtgagtccatatgctatatgttttgcttttgatctcacctgattaatcttgggtatgggcgaatcaccgacatgtttgttttccagctcctgtgaagaccctcagtcatgcagacaacaaatttctgaggattttaagaacgaggctcctatttggaagcttacttgttatgctcatctcagaaagtaaataattcatgtcctatgcttcaagccttcaaaagttgctctaggccatgccaaatgtttgtgcacttaataatgcacttttgtttgcatcagtggcccttgcaatattaagggagacattagcttcgaggaactaagagctaaagcctatgaggaaggaaagcaagggcattctctgcaatcaatagtaagttttccattttccagcactcccaattcattgatagttttatctgtggattttagcagaagtaatacctgctttcattagctttgcttacatggtctgatctatgtaaatttgaattgatgtgatctctttcaggttgagggagaaagaaatctacaaaacgcaaagttaatggagtttactaatctgctcaatagtgcacgtccatcacaaactccaagctttcctactatgagttccttccctgaagtgaaaaacaactcatcattcggggcttctcaaaccaatggaccacctgtgttcagtagtttcagtcaaattggagcagcaactaatattggacctgggccagggtactactctactagttcttttgtaaaatatgcagtgattgtgttactaatctactccctccgtttcacaatgtaagactgtctagcattgcccacatacatatagatgttaatgaatctaaacacatgcatatgtctagattcattaacatttaaatgaatgtgggcaatgctagaaagtcttacattgtgaaacggaggaagtattgaagaaagacaatttaatcagaaagcagcgcttagaaaagttctttaaacacaattgcaaagctcacatatagttgatcaattttctaatgctgttcatttggttctgatgtgtgttaaatgactgcctctcatgcagaaccaccgcaccaggaatgccagccagtagtccttttggtcatccaagctctgcaccacttgctgcccctacttttggcagttctcaaatgaagtttggagtttcgagtatgttgctgaaagtttcatttactagatatttgtactgttacatggaagaaagatggcatataagctttcacctagtgaaattataaatattattctattgaggggtagttggaaagaatatgcttgcgcctaattcaaaaaagaagttttcaaaagttctgcttgatagtaggtattgtggactaagattttcaaaatatctattctaatacatctgactattttctctttcatctatgttcacaggcttttgttccatgattccatcccttctgggaattaataactattgtgttgggttgctatttaacttttagaattttgcaggcgtatttggaaaccagggttcaggtcaaccatttgggagctttcaagccccacgttttcccagttcgaagtctcctgcttcctctgtccagcacagagacattgataggcaatcacaagagttgcttaatgggatggtaactcctcctagtgtgatgtttgaggaatctgttgggtaagttctgtgataattataactgtatacttgataagaatgtatttctgctgatgggaatacatgttgctgtgttaaattagcttcgcatcatgtttaatcttctttgtttatattccacaggaacaacaaaaatgaaaatcaggatgatagcatctggttgaaggaaaaatgggcaattggggaggtgtgggatactttcctcttggtcattttcgaagttctgtttgctagaaatgtttgctcatttacaacttttgttcctgctatggtacatttgtagttagttctctatctccttagtccttaatattgtacgcatgttcatttagtagtgttgacatcatgcacagactgtggtctagattatgaatttgtggcatgcgcaagattatacttagaaagatctctacatatcgtacatgtttgcttagtgtgcatcttcccgtcttgcaaattatcaagagtttgaacaagcattggctttactaacttgtgctttctttatatttggcaagtttctacaatttaaattcatacgaaacttcctttcagataccgctggatgaaccacctcagaggcacgttagccatgtgttttaagaactcaaaggtgtttttttttgtgttgttgaggcatgagaccatgaactactcagctatgatctgacttccttgtagttgggttgccaccatatgtcgtacttttcttgcccgaggtatatatgctcaccttatacccttttcccttcagtttgtatgccatttatcagtgggccttgattctggctgctatgttgcagcttcatgacgatacaaaggaattatacaacaaacaagagaatttgcaagagtgaacagtgaaggaaggctgatgaaccaatgcattgtttggtaccacttatttattcctggaacatgaatgtgggcaactagagctaacaaccagctaactgcagtcttgcctgtcgagttagtatgtttttctctcttttttttaatctgtaattgtttattccaatagtatgtttttctttttttttaatctgtaattgtttattccaaaacttgttaggaagttattggaataagaaacagtattgcaatattgagtgattggccgggt</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065042.1 RefSeq:Os06g0704300]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 6]]~~
−	~~[[Category:~~Chromosome 6]]

← Older revision		Revision as of 20:28, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os06g0704300\|		GeneName = Os06g0704300\|