Os07g0129200 - Revision history

Xysj2028: /* References */

2017-05-08T09:26:11Z

‎References

Xysj2028: /* Expression */

2017-05-08T09:25:35Z

‎Expression

Xysj2028 at 09:25, 8 May 2017

2017-05-08T09:25:20Z

Xysj1981 at 06:21, 8 March 2017

2017-03-08T06:21:25Z

Xysj2012: /* Structured Information */

2015-06-12T08:32:11Z

‎Structured Information

Canghai91: /* Annotated Information */

2014-05-29T07:29:04Z

‎Annotated Information

Canghai91: /* Annotated Information */

2014-05-29T07:28:15Z

‎Annotated Information

Canghai91: /* Expression */

2014-05-29T07:27:00Z

‎Expression

Canghai91: /* Labs working on this gene */

2014-05-26T11:32:40Z

‎Labs working on this gene

Canghai91: /* Expression */

2014-05-26T11:20:17Z

‎Expression

@@ Line 26: / Line 26: @@
 ==References==
-[1]Kamrun Nahar, Tina Kyndt, David De Vleesschauwer, Monica Hö, fte, Godelieve Gheysen.The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice.Plant Physiology, 2011, 157(1): 305-316
+* [1] Kamrun Nahar, Tina Kyndt, David De Vleesschauwer, Monica Hö, fte, Godelieve Gheysen.The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice.Plant Physiology, 2011, 157(1): 305-316
-[2]Ichiro Mitsuhara; Takayoshi Iwai; Shigemi Seo; Yuki Yanagawa; Hiroyuki Kawahigasi; Sakino Hirose; Yasunobu Ohkawa; Yuko Ohashi.Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).Molecular Genetics and Genomics, 2008, 279(4): 415-427  DOI: 10.1007/s00438-008-0322-9
+* [2] Ichiro Mitsuhara; Takayoshi Iwai; Shigemi Seo; Yuki Yanagawa; Hiroyuki Kawahigasi; Sakino Hirose; Yasunobu Ohkawa; Yuko Ohashi.Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).Molecular Genetics and Genomics, 2008, 279(4): 415-427  DOI: 10.1007/s00438-008-0322-9
-[3]Ganesh Kumar Agrawal; Nam-Soo Jwa; Randeep Rakwal.A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones, and Protein Phosphatase Inhibitors.Biochemical and Biophysical Research Communications, 2000, 274(1): 157-165
+* [3] Ganesh Kumar Agrawal; Nam-Soo Jwa; Randeep Rakwal.A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones, and Protein Phosphatase Inhibitors.Biochemical and Biophysical Research Communications, 2000, 274(1): 157-165
-[4]Ganesh Kumar Agrawala§, Randeep Rakwalb§‡*, Nam-Soo Jwac, Vishwanath Prasad Agrawala.Signalling molecules and blast pathogen attack activates rice OsPR1a and OsPR1b genes: A model illustrating omponents participating during defence/stress response.Plant Physiol. Biochem. 39 (2001) 1095−1103
+* [4] Ganesh Kumar Agrawala§, Randeep Rakwalb§‡*, Nam-Soo Jwac, Vishwanath Prasad Agrawala.Signalling molecules and blast pathogen attack activates rice OsPR1a and OsPR1b genes: A model illustrating omponents participating during defence/stress response.Plant Physiol. Biochem. 39 (2001) 1095−1103
-[5]Ganesh Kumar Agrawal,*,1 Nam-Soo Jwa,† and Randeep Rakwal. A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones,and Protein Phosphatase Inhibitors. Biochemical and Biophysical Research Communications 274, 157–165 (2000)
+* [5] Ganesh Kumar Agrawal,*,1 Nam-Soo Jwa,† and Randeep Rakwal. A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones,and Protein Phosphatase Inhibitors. Biochemical and Biophysical Research Communications 274, 157–165 (2000)
 ==Structured Information==

@@ Line 14: / Line 14: @@
 * The '''''OsPR1a''''' gene was found to be cut-inducible, whereas the phytohormones JA, salicylic acid (SA), 3-indoleacetic acid, gibberellin, and ethylene (using ethylene generator ethephon, ET) enhanced accumulation of OsPR1a transcript, as well as the protein phosphatase inhibitors cantharidin (CN) and endothall (EN).
 * Induced expression of '''''OsPR1a''''' gene by JA, CN or EN, and ET was light/dark- and dose-dependent and was almost completely inhibited by cycloheximide.
-* Dark downregulated CN-, EN-, and ET-induced OsPR1a gene expression, whereas it was further enhanced with JA. SA and
+* Dark downregulated CN-, EN-, and ET-induced OsPR1a gene expression, whereas it was further enhanced with JA. SA and abscisic acid blocked JA-induced OsPR1a transcript.
 ===Evolution===

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice '''''Os07g0129200''''' was reported as '''''PR1A''''' in 2000 by researchers from Japan.
 ==Annotated Information==
 ===Function===
-Pathogenesis-related proteins(PR) have production/accumulation represents an essential component of the active plant defence repertoire.And they have been used as markers of plant defense responses.The dicot PR1 are recognized as reliable marker genes in defence/stress responses[http://ac.els-cdn.com/S098194280101333X/1-s2.0-S098194280101333X-main.pdf?_tid=63c95770-e4c3-11e3-8966-00000aab0f26&acdnat=1401101539_8905c05f1e1ed53663506bdbbcdfa6eb].
+* Pathogenesis-related proteins(PR) have production/accumulation represents an essential component of the active plant defence repertoire.
+* And they have been used as markers of plant defense responses.
-They are defined as plant proteins that are induced specifically in pathological or related situations.
+* The dicot PR1 are recognized as reliable marker genes in defence/stress responses
+* Activation of '''''OsPR1a''''' gene is an important part of the defence/stress response(s) in rice.
 ===Expression===
-The responses of individual genes to salicylic acid, jasmonic acid, and ethylene induced defense signaling pathways in rice are likely to be different from those in dicot plants. Transcript levels in healthy leaves, roots, and flowers varied according to each gene[http://www.ncbi.nlm.nih.gov/pubmed/18247056].
+* The '''''OsPR1a''''' gene was found to be cut-inducible, whereas the phytohormones JA, salicylic acid (SA), 3-indoleacetic acid, gibberellin, and ethylene (using ethylene generator ethephon, ET) enhanced accumulation of OsPR1a transcript, as well as the protein phosphatase inhibitors cantharidin (CN) and endothall (EN).
+* Induced expression of '''''OsPR1a''''' gene by JA, CN or EN, and ET was light/dark- and dose-dependent and was almost completely inhibited by cycloheximide.
-OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)
+* Dark downregulated CN-, EN-, and ET-induced OsPR1a gene expression, whereas it was further enhanced with JA. SA and
+abscisic acid blocked JA-induced OsPR1a transcript.
 ===Evolution===
-Alignment of the deduced rice PR1 protein sequence (OsPR1a) with homologous sequences(fig3). The most homologous monocot sequences were identified by database searches with the Blast algorithm, whereas the Arabidopsis thaliana and tobacco sequences are shown as examples of dicot PR1 genes.An arrowhead indicates the putative processing site and boxes indicate the consensus regions I and II. Asterisks represent identical amino acid residues and dashes indicate gaps introduced to optimize alignment.
+* Southern analysis revealed that '''''OsPR1a''''' is a member of a multigene family.
 ==Labs working on this gene==
@@ Line 28: / Line 29: @@
 [1]Kamrun Nahar, Tina Kyndt, David De Vleesschauwer, Monica Hö, fte, Godelieve Gheysen.The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice.Plant Physiology, 2011, 157(1): 305-316
 [2]Ichiro Mitsuhara; Takayoshi Iwai; Shigemi Seo; Yuki Yanagawa; Hiroyuki Kawahigasi; Sakino Hirose; Yasunobu Ohkawa; Yuko Ohashi.Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).Molecular Genetics and Genomics, 2008, 279(4): 415-427  DOI: 10.1007/s00438-008-0322-9
 [3]Ganesh Kumar Agrawal; Nam-Soo Jwa; Randeep Rakwal.A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones, and Protein Phosphatase Inhibitors.Biochemical and Biophysical Research Communications, 2000, 274(1): 157-165
 [4]Ganesh Kumar Agrawala§, Randeep Rakwalb§‡*, Nam-Soo Jwac, Vishwanath Prasad Agrawala.Signalling molecules and blast pathogen attack activates rice OsPR1a and OsPR1b genes: A model illustrating omponents participating during defence/stress response.Plant Physiol. Biochem. 39 (2001) 1095−1103
 [5]Ganesh Kumar Agrawal,*,1 Nam-Soo Jwa,† and Randeep Rakwal. A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones,and Protein Phosphatase Inhibitors. Biochemical and Biophysical Research Communications 274, 157–165 (2000)

@@ Line 13: / Line 13: @@
 OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)
 ===Evolution===
 Alignment of the deduced rice PR1 protein sequence (OsPR1a) with homologous sequences(fig3). The most homologous monocot sequences were identified by database searches with the Blast algorithm, whereas the Arabidopsis thaliana and tobacco sequences are shown as examples of dicot PR1 genes.An arrowhead indicates the putative processing site and boxes indicate the consensus regions I and II. Asterisks represent identical amino acid residues and dashes indicate gaps introduced to optimize alignment.
 ==Labs working on this gene==
-[1]Research Laboratory for Agricultural Biotechnology and Biochemistry (RLABB), Kathmandu, GPO Box 8207, Nepal
+* Research Laboratory for Agricultural Biotechnology and Biochemistry (RLABB), Kathmandu, GPO Box 8207, Nepal
+* Department of Agricultural Biology, College of Agriculture and Life Science, Seoul National University
+* Core Research for Evolutional Science and Technology (CREST), Honcho 4-1-8, Kawaguchi, Saitama 332, Japan
+* National Institute of Agrobiological Sciences (NIAS), Kannon-dai 2-1-2, Tsukuba, Ibaraki, 305-8602, Japan
 ==References==

@@ Line 67: / Line 67: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]

@@ Line 14: / Line 14: @@
 OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)
 (fig2)[http://ac.els-cdn.com/S098194280101333X/1-s2.0-S098194280101333X-main.pdf?_tid=63c95770-e4c3-11e3-8966-00000aab0f26&acdnat=1401101539_8905c05f1e1ed53663506bdbbcdfa6eb].
 [[File:Expression of OsPR1 influenced.JPG]]
@@ Line 19: / Line 20: @@
 --[[User:Canghai91|Canghai91]] 19:20, 26 May 2014 (CST)fig1:The expression of OsPR1a and OsPR1b genes influenced by SA, ABA and H2O2
 [[File:Expression of OsPR1 influenced by SA.JPG]]
@@ Line 27: / Line 29: @@
 ===Evolution===
 Alignment of the deduced rice PR1 protein sequence (OsPR1a) with homologous sequences(fig3). The most homologous monocot sequences were identified by database searches with the Blast algorithm, whereas the Arabidopsis thaliana and tobacco sequences are shown as examples of dicot PR1 genes.An arrowhead indicates the putative processing site and boxes indicate the consensus regions I and II. Asterisks represent identical amino acid residues and dashes indicate gaps introduced to optimize alignment.
 [[File:Homologous sequences.JPG]]
 fig3:Rice PR1 protein sequence (OsPR1a) with homologous sequences

← Older revision		Revision as of 07:27, 29 May 2014
Line 13:		Line 13:

	OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)		OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)
−	(fig2)[http://ac.els-cdn.com/S098194280101333X/1-s2.0-S098194280101333X-main.pdf?_tid=63c95770-e4c3-11e3-8966-00000aab0f26&acdnat=1401101539_8905c05f1e1ed53663506bdbbcdfa6eb].	+	(fig2)[http://ac.els-cdn.com/S098194280101333X/1-s2.0-S098194280101333X-main.pdf?_tid=63c95770-e4c3-11e3-8966-00000aab0f26&acdnat=1401101539_8905c05f1e1ed53663506bdbbcdfa6eb].[[File:Expression of OsPR1 influenced.JPG]]

−	~~[[File:Expression of OsPR1 influenced.JPG]]~~

← Older revision		Revision as of 11:32, 26 May 2014
Line 47:		Line 47:

	[3]Core Research for Evolutional Science and Technology (CREST), Honcho 4-1-8, Kawaguchi, Saitama 332, Japan		[3]Core Research for Evolutional Science and Technology (CREST), Honcho 4-1-8, Kawaguchi, Saitama 332, Japan
		+
		+
		+
		+
		+	[4]National Institute of Agrobiological Sciences (NIAS), Kannon-dai 2-1-2, Tsukuba, Ibaraki, 305-8602, Japan

	==References==		==References==