Os07g0497100 - Revision history

Chenxi Sang: /* Annotated Information */

2016-10-22T13:21:23Z

‎Annotated Information

Chenxi Sang: /* Annotated Information */

2016-10-22T13:21:12Z

‎Annotated Information

Chenxi Sang at 13:20, 22 October 2016

2016-10-22T13:20:40Z

192.168.72.52 at 14:13, 14 May 2015

2015-05-14T14:13:57Z

124.16.129.48 at 20:36, 22 July 2012

2012-07-22T20:36:31Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os07g0497100| Description = Similar to Chromodomain helicase-DNA-binding protein 5 (CHD-5)| Version = NM_001066241.1 GI:115472214 GeneID:4343300|..."

2012-06-24T08:36:59Z

Created page with "{{JaponicaGene| GeneName = Os07g0497100| Description = Similar to Chromodomain helicase-DNA-binding protein 5 (CHD-5)| Version = NM_001066241.1 GI:115472214 GeneID:4343300|..."

New page

{{JaponicaGene|
GeneName = Os07g0497100|
Description = Similar to Chromodomain helicase-DNA-binding protein 5 (CHD-5)|
Version = NM_001066241.1 GI:115472214 GeneID:4343300|
Length = 3149 bp|
Definition = Oryza sativa Japonica Group Os07g0497100, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
AP = Chromosome 7:19296343..19299491|
CDS = 19296343..19296936,19297038..19297139,19297820..19298041|
GCID = <gbrowseImage1>
name=NC_008400:19296343..19299491
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008400:19296343..19299491
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgatgaaggagcggagctctttatgtgaaagtgcggcagatggaagttgggttttgaaatacaaaaggaaacggagcaagctaacagttagtccatcaagtgagcatgatgcttcctcaccaatactggattctcaaatgaacaatggctccatcaaaaagaagatcaaacatgacactaacatttctccatcaaccaagaagataagaggacatgacgggtacttctacgagtgtgtagaatgtgatctcggtggcaatttgctgtgctgtgatagctgtccacgaacataccacttggaatgtcttaatcctcctctcaagcgtgcaccacctggaaattggcaatgcccaagatgtcgtacaaaaaaagttagcttgaagctcttagacaatgctgatgctgacacctctaaacgtgaaagaacaaggagaatgcgcacaagcaccacatcagatagcccatccccatctccacaaaacaaagcctcttttaacacatcacgtggtgctgcatttagggatgatgaaccaggtgcaaaagacaatgaagttgagaaaaggaaaccattgatattacatttgaagaagcgttcaaccaaggaactatctacagataccacatcatcaaagtcagggttacttggaaagtcttcagaagagaaacaggagaaacacggaagtgctttgaaagtgaagaaacatctgcatcccatggaattatctccaaagaaatataagaacaagaagcaacacaatcacagagacagtaagagatccgaagcaaaaaaggtccaatatttggcatcagatgtggacagtgattcttcaatggaaccatctacttctcttgagcacagcgaatcgccgcccccaaaaagaaaatcgttggatggaagaacacctgcatcaagtacc</cdnaseq>|
AA = <aaseq>MMKERSSLCESAADGSWVLKYKRKRSKLTVSPSSEHDASSPILD SQMNNGSIKKKIKHDTNISPSTKKIRGHDGYFYECVECDLGGNLLCCDSCPRTYHLEC LNPPLKRAPPGNWQCPRCRTKKVSLKLLDNADADTSKRERTRRMRTSTTSDSPSPSPQ NKASFNTSRGAAFRDDEPGAKDNEVEKRKPLILHLKKRSTKELSTDTTSSKSGLLGKS SEEKQEKHGSALKVKKHLHPMELSPKKYKNKKQHNHRDSKRSEAKKVQYLASDVDSDS SMEPSTSLEHSESPPPKRKSLDGRTPASST</aaseq>|
DNA = <dnaseqindica>2556..3149#2353..2454#1451..1672#gcggattcgcctcctccccccctccccccccccccccgcatctcctcccccccacgccgccgccgccgccgccgcttcggctccagctctccgccccgtccggtacccgccgaggaggagggtggggggtttgctccgcgcctcgcgcgcgatccgcggcggaagtcccggcgatccggcactgatttcggggtgccgccgcggcgacctggggaggtgagccgcgattcggggcctgctggggcgggtttgcgggggttttggtaggaatttggccgggggtggagtggggtggggtgggctacgcgagcgtgtgcttagggcggagattcggatttcgggggaggtggctgcggctgtttggagcggaggggtttaatagctacaggtgagcttgtgcgagagaaacggatggttgtgtctacgtgatccgacgacgagctaggtatagcttgtctgtatgcatgctgtagttcaagatgattagctaggttaaatacagtggtttgatatagagagtaaaccgagaagaaatttcagagacccgccgcggcaataggtgtacgagctgaagcttggggggtgtttggactaacagcagcatgtcatagtggaatcatgtgcgcggtgtgctagtttttggactttgaagcaatgaaacatttgaatgatgttagggttggaagtaaagtagcaaggatgtatctagtgcaggctaattgtgttggtggttacaaagggagggtttgttttacttttcataatgtggttgggttgtccatttgcatgcttccttcatatgacaaagtttaatttgagtatgagtgacaaaatgacaacaggatattgtctgttatgttctgtttaccccagttttttgttgtttagcttgtttactggggtttcatgataatagaaatgcttttctgtttgttttgtaccgctctctgaatttcggcctgtaaagttgtatgcgtgcatgttctgttctatgatatatggtgcaagggagtattaaatgcaacattgaaacgggtagcagtcaataatcgaagtgtaacgtgttgcaccacgcatgtctgttttatctgttagagagtgcttatcaccagattgtatgctcatggaaacagatggtaaccttcagttaaagtagaactgttcatcaactaatgcatcattttggtgtaagtacataatacgaataattccgagtatattcatatacctgaagtgcttaattttattgacacatatcacagtacaatctaatccttgattgaactctgtctgatttcttgttagaaacttagaatcgaactctgtatcatatgactataatgatatgaagattaatctattcaattaagggttgcctattttccgattttgaactaccaactaaggaaattctcttctgttgctagcagcatgtgacgttgatactctaatgatgaaggagcggagctctttatgtgaaagtgcggcagatggaagttgggttttgaaatacaaaaggaaacggagcaagctaacagttagtccatcaagtgagcatgatgcttcctcaccaatactggattctcaaatgaacaatggctccatcaaaaagaagatcaaacatgacactaacatttctccatcaaccaagaagataagaggacatgacggggtggatatctgctctgatactttccatttgtagtttagctgtatatctcatctaataatctccatatctggctttgctgttaatctgtcttgtggatattgtttgtgatttactccttgtggtcatgagaacaggtcatttgatacattaaaacagtttcaaatacaattttgaccataattgtaaaacatctgtagaacctaataaaactatcatatcacaaaagttcttgctgaggcaaatctacacatatgattttcatgtatttaatttaactgtttaaagacatcttggtactcaagttttgaaagtttgactggagaagcatttcttatggcactcatgtaaaatccctcatatctacaacaatggatcaatccactacctttggcaatttgacacatgatggggatgtgaccaaactcttgcagtgtttctgcattcaagatgcatgcctacaacaaatattggagtcccatgtagttatcatacatttgtgtgcgaataattataggaaattgcaaaagcaggttttggaaaaaaatgaattgaatttgagctgaacagtgatacatgtagtcataattcttacaagtttaaggcctgatacattattatttgttttctttgcattatgcggtctaaatatttttacatatacatttcttgtctttcttcagtacttctacgagtgtgtagaatgtgatctcggtggcaatttgctgtgctgtgatagctgtccacgaacataccacttggaatgtcttaatcctcctctcaaggtttgaatcttatccgttgtttcttgttttctttgactgttttttttggggattgtactgattgcttcttatctctttgcatgcttccatctacaatgtagcgtgcaccacctggaaattggcaatgcccaagatgtcgtacaaaaaaagttagcttgaagctcttagacaatgctgatgctgacacctctaaacgtgaaagaacaaggagaatgcgcacaagcaccacatcagatagcccatccccatctccacaaaacaaagcctcttttaacacatcacgtggtgctgcatttagggatgatgaaccaggtgcaaaagacaatgaagttgagaaaaggaaaccattgatattacatttgaagaagcgttcaaccaaggaactatctacagataccacatcatcaaagtcagggttacttggaaagtcttcagaagagaaacaggagaaacacggaagtgctttgaaagtgaagaaacatctgcatcccatggaattatctccaaagaaatataagaacaagaagcaacacaatcacagagacagtaagagatccgaagcaaaaaaggtccaatatttggcatcagatgtggacagtgattcttcaatggaaccatctacttctcttgagcacagcgaatcgccgcccccaaaaagaaaatcgttggatggaagaacacctgcatcaagtacc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001066241.1 RefSeq:Os07g0497100]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 7]]
[[Category:Chromosome 7]]

@@ Line 2: / Line 2: @@
 ==Annotated Information==
-[[File:175-Os07g0497100.png|right|thumb|327px|'''Figure 1.''' ''The effects of the chr729 mutation on rice plant morphology.<ref name="ref1" />.'']]
+[[File:175-Os07g0497100.png|right|thumb|227px|'''Figure 1.''' ''The effects of the chr729 mutation on rice plant morphology.<ref name="ref1" />.'']]
 ===Gene Symbol===
 *'''''Os07g0497100''''' '''''<=>''''' '''''OsCHR729,chr729'''''

@@ Line 2: / Line 2: @@
 ==Annotated Information==
-[[File:175-Os07g0497100.png|right|thumb|427px|'''Figure 1.''' ''The effects of the chr729 mutation on rice plant morphology.<ref name="ref1" />.'']]
+[[File:175-Os07g0497100.png|right|thumb|327px|'''Figure 1.''' ''The effects of the chr729 mutation on rice plant morphology.<ref name="ref1" />.'']]
 ===Gene Symbol===
 *'''''Os07g0497100''''' '''''<=>''''' '''''OsCHR729,chr729'''''

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice '''''Os07g0497100''''' was reported as '''''chr729''''' in 2012 <ref name="ref1" /> by researchers from France.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+*  The rice CHD3 protein '''''CHR729''''' was required for many aspects of plant development.
+*  '''''CHR729''''' can interact with dimethylated histone H3 lysine 4 (H3K4me2, a mark associated with moderately expressed or repressed genes) and with trimethylated histone H3 lysine 27 (H3K27me3, a mark associated with repressed genes), respectively, through the chromodomains and the plant homeodomain (PHD) finger of the protein.
-===Expression===
+* The rice CHD3 protein is a bifunctional chromatin regulator able to recognize and modulate H3K4 and H3K27 methylation over repressed or tissue specific genes, which may be associated with regulation of a gene transcription program of plant development.
-Please input expression information here.
+* Loss of '''''CHR729''''' Affected Many Aspects of Plant Development.
+===Phenotypic analysis===
-===Evolution===
+* The chr729 T-DNA mutation caused a set of morphological and growth defects, including short and narrow leaves, reduced stem elongation, reduced chlorophyll contents, and no secondary panicle branches (Fig. 1 ).
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
-Please input related labs here.
+* National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, 430070 Wuhan, China; and b Institut de Biologie des Plantes, Unité Mixte de Recherche 8618, Université Paris sud, 91405 Orsay, France
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==
 		 [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]]

← Older revision		Revision as of 14:13, 14 May 2015
Line 20:		Line 20:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]]
−	~~GeneName = Os07g0497100\|~~
−	~~Description = Similar to Chromodomain helicase-DNA-binding protein 5 (CHD-5)\|~~
−	~~Version = NM_001066241.1 GI:115472214 GeneID:4343300\|~~
−	~~Length = 3149 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os07g0497100, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 7\|Chromosome 7]]\|~~
−	~~AP = Chromosome 7:19296343..19299491\|~~
−	~~CDS = 19296343..19296936,19297038..19297139,19297820..19298041\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008400:19296343..19299491~~
−	~~source=RiceChromosome07~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008400:19296343..19299491~~
−	~~source=RiceChromosome07~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atgatgaaggagcggagctctttatgtgaaagtgcggcagatggaagttgggttttgaaatacaaaaggaaacggagcaagctaacagttagtccatcaagtgagcatgatgcttcctcaccaatactggattctcaaatgaacaatggctccatcaaaaagaagatcaaacatgacactaacatttctccatcaaccaagaagataagaggacatgacgggtacttctacgagtgtgtagaatgtgatctcggtggcaatttgctgtgctgtgatagctgtccacgaacataccacttggaatgtcttaatcctcctctcaagcgtgcaccacctggaaattggcaatgcccaagatgtcgtacaaaaaaagttagcttgaagctcttagacaatgctgatgctgacacctctaaacgtgaaagaacaaggagaatgcgcacaagcaccacatcagatagcccatccccatctccacaaaacaaagcctcttttaacacatcacgtggtgctgcatttagggatgatgaaccaggtgcaaaagacaatgaagttgagaaaaggaaaccattgatattacatttgaagaagcgttcaaccaaggaactatctacagataccacatcatcaaagtcagggttacttggaaagtcttcagaagagaaacaggagaaacacggaagtgctttgaaagtgaagaaacatctgcatcccatggaattatctccaaagaaatataagaacaagaagcaacacaatcacagagacagtaagagatccgaagcaaaaaaggtccaatatttggcatcagatgtggacagtgattcttcaatggaaccatctacttctcttgagcacagcgaatcgccgcccccaaaaagaaaatcgttggatggaagaacacctgcatcaagtacc</cdnaseq>\|
−	AA = <aaseq>MMKERSSLCESAADGSWVLKYKRKRSKLTVSPSSEHDASSPILD SQMNNGSIKKKIKHDTNISPSTKKIRGHDGYFYECVECDLGGNLLCCDSCPRTYHLEC LNPPLKRAPPGNWQCPRCRTKKVSLKLLDNADADTSKRERTRRMRTSTTSDSPSPSPQ NKASFNTSRGAAFRDDEPGAKDNEVEKRKPLILHLKKRSTKELSTDTTSSKSGLLGKS SEEKQEKHGSALKVKKHLHPMELSPKKYKNKKQHNHRDSKRSEAKKVQYLASDVDSDS SMEPSTSLEHSESPPPKRKSLDGRTPASST</aaseq>\|
−	DNA = <dnaseqindica>2556..3149#2353..2454#1451..1672#gcggattcgcctcctccccccctccccccccccccccgcatctcctcccccccacgccgccgccgccgccgccgcttcggctccagctctccgccccgtccggtacccgccgaggaggagggtggggggtttgctccgcgcctcgcgcgcgatccgcggcggaagtcccggcgatccggcactgatttcggggtgccgccgcggcgacctggggaggtgagccgcgattcggggcctgctggggcgggtttgcgggggttttggtaggaatttggccgggggtggagtggggtggggtgggctacgcgagcgtgtgcttagggcggagattcggatttcgggggaggtggctgcggctgtttggagcggaggggtttaatagctacaggtgagcttgtgcgagagaaacggatggttgtgtctacgtgatccgacgacgagctaggtatagcttgtctgtatgcatgctgtagttcaagatgattagctaggttaaatacagtggtttgatatagagagtaaaccgagaagaaatttcagagacccgccgcggcaataggtgtacgagctgaagcttggggggtgtttggactaacagcagcatgtcatagtggaatcatgtgcgcggtgtgctagtttttggactttgaagcaatgaaacatttgaatgatgttagggttggaagtaaagtagcaaggatgtatctagtgcaggctaattgtgttggtggttacaaagggagggtttgttttacttttcataatgtggttgggttgtccatttgcatgcttccttcatatgacaaagtttaatttgagtatgagtgacaaaatgacaacaggatattgtctgttatgttctgtttaccccagttttttgttgtttagcttgtttactggggtttcatgataatagaaatgcttttctgtttgttttgtaccgctctctgaatttcggcctgtaaagttgtatgcgtgcatgttctgttctatgatatatggtgcaagggagtattaaatgcaacattgaaacgggtagcagtcaataatcgaagtgtaacgtgttgcaccacgcatgtctgttttatctgttagagagtgcttatcaccagattgtatgctcatggaaacagatggtaaccttcagttaaagtagaactgttcatcaactaatgcatcattttggtgtaagtacataatacgaataattccgagtatattcatatacctgaagtgcttaattttattgacacatatcacagtacaatctaatccttgattgaactctgtctgatttcttgttagaaacttagaatcgaactctgtatcatatgactataatgatatgaagattaatctattcaattaagggttgcctattttccgattttgaactaccaactaaggaaattctcttctgttgctagcagcatgtgacgttgatactctaatgatgaaggagcggagctctttatgtgaaagtgcggcagatggaagttgggttttgaaatacaaaaggaaacggagcaagctaacagttagtccatcaagtgagcatgatgcttcctcaccaatactggattctcaaatgaacaatggctccatcaaaaagaagatcaaacatgacactaacatttctccatcaaccaagaagataagaggacatgacggggtggatatctgctctgatactttccatttgtagtttagctgtatatctcatctaataatctccatatctggctttgctgttaatctgtcttgtggatattgtttgtgatttactccttgtggtcatgagaacaggtcatttgatacattaaaacagtttcaaatacaattttgaccataattgtaaaacatctgtagaacctaataaaactatcatatcacaaaagttcttgctgaggcaaatctacacatatgattttcatgtatttaatttaactgtttaaagacatcttggtactcaagttttgaaagtttgactggagaagcatttcttatggcactcatgtaaaatccctcatatctacaacaatggatcaatccactacctttggcaatttgacacatgatggggatgtgaccaaactcttgcagtgtttctgcattcaagatgcatgcctacaacaaatattggagtcccatgtagttatcatacatttgtgtgcgaataattataggaaattgcaaaagcaggttttggaaaaaaatgaattgaatttgagctgaacagtgatacatgtagtcataattcttacaagtttaaggcctgatacattattatttgttttctttgcattatgcggtctaaatatttttacatatacatttcttgtctttcttcagtacttctacgagtgtgtagaatgtgatctcggtggcaatttgctgtgctgtgatagctgtccacgaacataccacttggaatgtcttaatcctcctctcaaggtttgaatcttatccgttgtttcttgttttctttgactgttttttttggggattgtactgattgcttcttatctctttgcatgcttccatctacaatgtagcgtgcaccacctggaaattggcaatgcccaagatgtcgtacaaaaaaagttagcttgaagctcttagacaatgctgatgctgacacctctaaacgtgaaagaacaaggagaatgcgcacaagcaccacatcagatagcccatccccatctccacaaaacaaagcctcttttaacacatcacgtggtgctgcatttagggatgatgaaccaggtgcaaaagacaatgaagttgagaaaaggaaaccattgatattacatttgaagaagcgttcaaccaaggaactatctacagataccacatcatcaaagtcagggttacttggaaagtcttcagaagagaaacaggagaaacacggaagtgctttgaaagtgaagaaacatctgcatcccatggaattatctccaaagaaatataagaacaagaagcaacacaatcacagagacagtaagagatccgaagcaaaaaaggtccaatatttggcatcagatgtggacagtgattcttcaatggaaccatctacttctcttgagcacagcgaatcgccgcccccaaaaagaaaatcgttggatggaagaacacctgcatcaagtacc</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001066241.1 RefSeq:Os07g0497100]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 7]]~~
−	~~[[Category:~~Chromosome 7]]

← Older revision		Revision as of 20:36, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os07g0497100\|		GeneName = Os07g0497100\|