Os07g0628500 - Revision history

Xysj2012: /* Structured Information */

2015-06-12T08:48:36Z

‎Structured Information

Zhangye at 13:17, 23 March 2015

2015-03-23T13:17:11Z

124.16.129.48 at 20:40, 22 July 2012

2012-07-22T20:40:30Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os07g0628500| Description = Basic helix-loop-helix dimerisation region bHLH domain containing protein| Version = NM_001066885.1 GI:115473502 Gene..."

2012-06-24T08:48:01Z

Created page with "{{JaponicaGene| GeneName = Os07g0628500| Description = Basic helix-loop-helix dimerisation region bHLH domain containing protein| Version = NM_001066885.1 GI:115473502 Gene..."

New page

{{JaponicaGene|
GeneName = Os07g0628500|
Description = Basic helix-loop-helix dimerisation region bHLH domain containing protein|
Version = NM_001066885.1 GI:115473502 GeneID:4343984|
Length = 2517 bp|
Definition = Oryza sativa Japonica Group Os07g0628500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
AP = Chromosome 7:26699867..26702383|
CDS = 26700037..26700519,26700763..26700890,26701346..26701464,26701990..26702057|
GCID = <gbrowseImage1>
name=NC_008400:26699867..26702383
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008400:26699867..26702383
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggtgcccagggacagggtgaatgccgctgccgctggtggcggcggcgaggggaggctggtccagagcggtatagtgaacaagaagtgtgataagaaggctccaaagagaatccataaatcagagagggagaaacttaagcgggacaagcagaatgacctctttaatgagctgggaaacttgctagaacctgacaggcagaacaatgggaaggcatgtgtactgggtgaaactacacgaatactaaaagatttactttcacaagtggaatctctccggaaggagaatagttcactgaagaatgaatctcattatgttgcattggagagaaatgaactgcacgacgataacagcatgcttcgtactgaaatcttggagcttcaaaacgagcttaggacgcggatggaaggcaatcctgtttggagtcatgtaaacaccagaccagctctcagggtaccttatccgacaaccggagtgttcccagtacagcacctgccacatttaccagtcaccacgacggcagcatttcctcagcagctaccggttatcatcgagcagcactatgccgccacgccaagagaacttcagctcttccctgagtctgcgaccagcgaagacagcgaaccgtcacaagaacacgggatttctgaccatgtaacacggcctcagccaaggtacccaacaccaacggccactttgccagtaaacctgtttccagtgtttccaggaagacaagatcaacaatgtagcagtggtacttctggcactaacgaggaagaccgtataggtagatcttag</cdnaseq>|
AA = <aaseq>MVPRDRVNAAAAGGGGEGRLVQSGIVNKKCDKKAPKRIHKSERE KLKRDKQNDLFNELGNLLEPDRQNNGKACVLGETTRILKDLLSQVESLRKENSSLKNE SHYVALERNELHDDNSMLRTEILELQNELRTRMEGNPVWSHVNTRPALRVPYPTTGVF PVQHLPHLPVTTTAAFPQQLPVIIEQHYAATPRELQLFPESATSEDSEPSQEHGISDH VTRPQPRYPTPTATLPVNLFPVFPGRQDQQCSSGTSGTNEEDRIGRS</aaseq>|
DNA = <dnaseqindica>1865..2347#1494..1621#920..1038#327..394#ggtggcgtccacgcgcccaccccacgcgcgtcaccgtcgctcgcccaaactgcgggcgcgtcgcacgccgccctcccatcgttttctcccattctttccccctcctcctcgtgcaaccacccaaccactgcagccagccacgagccgaggaagccgaggccgaggaggaagacgacgaagacaagtagcgcaaggaaccctcgaaccgggaggccgccgcggctccgatctgggaggtaaccggagctgcaccgcgcggtggggggaaattgaccagagtttgtttgattgatcgattgattgggaagtttcagggggaggtcgagatggtgcccagggacagggtgaatgccgctgccgctggtggcggcggcgaggggaggctggtccagaggtgagtcgttgttgctttcctaggggggcgtgtatggcttcgtcgctttgtgaggatgaggggggaaaaagtatgaactggatggattgggttgggttgctcttagctctcttggttttgggacgaagtggaaatttagtagtgtttttttttgacatattatgagttggttttatgagagacgtaaaccatgagatggaaataatgcttttaggccctgttgatgtgtatcatgtgcgtccaattttggagttggaggagcctaatttgagtttctgccatacagattaaagaattctcatattttaatttacgaacttaaaagccagatggataatgttgttgttgtgtttggaccatttatatttttgtagcactgcaaatttaattgctgcaatggggttaactaccagaactactacaaatcgaaaagcaattccttacttcatcttgaggtgttccatgaaggaatatttttgtccaaactgctttacaatcacactgatgtttgaactttctatgcagcggtatagtgaacaagaagtgtgataagaaggctccaaagagaatccataaatcagagagggagaaacttaagcgggacaagcagaatgacctctttaatgagctgggaaacttgctaggtatgtgtttgtttcgtaattgcgaatccataaacatgattcagattgcacaattgcattgcaacatttggatttttctttctgaaatatgcttatttatgtcattccatctagtgtacatactttcaatactgctagagacatccatttataatcttgtaggagtagtttgttcttatctattactaaattttaagatggatattacaaactctctggacgagttactactagaaatatagcagctgaaattgatttagcagtatttacattttcatctgccacaacctaacttttccctttacgtaaaatacaaaaaggaaaaaaaaagcagcagttatagtgagtgcaagtatcatttgtctaattaatttttagttgtctcagtttcaaaactgcatcgtttttgcatgcggaattatattttcctaagcaacgtgcaaactcctttccagaacctgacaggcagaacaatgggaaggcatgtgtactgggtgaaactacacgaatactaaaagatttactttcacaagtggaatctctccggaaggagaatagttcactgaagaatgaatctcattatgtaagctcttccgaattgaatgtcctatttgtcttcttgcaaaatattagctcaattgttctccttcaattaatttgatggccatggtctggttagtaataataccatggatatggaaaaatgtagagtagtacatatgatcatgataagagtttcttagaatagggctccaattatcattacttagaaaacaaagccaccttactactgattcataatcctactttccatgctgcaaaacaggttgcattggagagaaatgaactgcacgacgataacagcatgcttcgtactgaaatcttggagcttcaaaacgagcttaggacgcggatggaaggcaatcctgtttggagtcatgtaaacaccagaccagctctcagggtaccttatccgacaaccggagtgttcccagtacagcacctgccacatttaccagtcaccacgacggcagcatttcctcagcagctaccggttatcatcgagcagcactatgccgccacgccaagagaacttcagctcttccctgagtctgcgaccagcgaagacagcgaaccgtcacaagaacacgggatttctgaccatgtaacacggcctcagccaaggtacccaacaccaacggccactttgccagtaaacctgtttccagtgtttccaggaagacaagatcaacaatgtagcagtggtacttctggcactaacgaggaagaccgtataggtagatcttaggtacactacataacgagaggtccacacaatgatttgagaattcctttagtttcaacgtttaactttgcaagtttagcaaatgtgaaacagagatctgcgactgtgctcatgggtagcacctaatctgtatatctgaatctcagttttaagtggtcaaataggtgacattc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001066885.1 RefSeq:Os07g0628500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 7]]
[[Category:Chromosome 7]]

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+'''''OsbHLH1''''' is a '''unique-copy gene''' in rice<ref name="ref1"/>.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+OsbHLH1 had the '''ability to dimerize'''. OsbHLH1 may '''function as a transcription factor''' in a '''cold signal-transduction pathway'''. OsbHLH1 may not function in leaves but rather play roles in the cold responses of '''roots'''. OsbHLH1 protein had '''transcriptional activation activity'''<ref name="ref1"/>.
 ===Expression===
-Please input expression information here.
+*The transcription of the OsbHLH1 gene was '''specifically induced''' in '''roots''' of rice '''seedlings''' by cold but not '''by NaCl''', '''PEG''' and '''ABA treatments'''<ref name="ref1"/>.
 ===Evolution===
-Please input evolution information here.
+*The predicted OsbHLH1  has a '''putative DNA binding-domain bHLH-ZIP'''. The genomic sequence of the OsbHLH1 gene is '''unique''' in rice genome and has '''four introns'''. The OsbHLH1 was 1,137 bp in length with an open reading frame (ORF) of 798 bp flanked by a 120-bp 5'- untranslated region (UTR) and a 219-bp 3'-UTR. The open reading frame encoded a putative protein of 266 amino acids with a predicted molecular mass of 42 kDa<ref name="ref1"/>.
-You can also add sub-section(s) at will.
+*''Ledent et al.'' made an extensive search for bHLH sequences in the completely sequenced genomes ofCaenorhabditis elegans and of Drosophila melanogaster. We found 35 and 56 different genes, respectively, which may represent the complete set of bHLH of these organisms. A phylogenetic analysis of these genes, together with a large number (>350) of bHLH from other sources, led us to define 44 orthologous families among which 36 include bHLH from animals only, and two have representatives in both yeasts and animals<ref name="ref3"/>.
 ==Labs working on this gene==
-Please input related labs here.
+*Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, 100101 Beijing, PR China
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==

← Older revision		Revision as of 20:40, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os07g0628500\|		GeneName = Os07g0628500\|

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 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]