Os07g0678600 - Revision history

Xysj2012: /* Structured Information */

2015-06-12T08:49:37Z

‎Structured Information

Zhangye: /* Expression */

2015-01-29T06:20:16Z

‎Expression

Zhangye at 06:17, 29 January 2015

2015-01-29T06:17:27Z

Zhangye: /* Expression */

2015-01-29T02:20:55Z

‎Expression

Zhangye: /* Knowledge Extension */

2015-01-28T16:30:54Z

‎Knowledge Extension

Zhangye: /* Knowledge Extension */

2015-01-28T16:30:39Z

‎Knowledge Extension

Zhangye: /* References */

2015-01-28T16:29:03Z

‎References

Zhangye at 16:28, 28 January 2015

2015-01-28T16:28:42Z

124.16.129.48 at 20:42, 22 July 2012

2012-07-22T20:42:14Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os07g0678600| Description = Similar to Serine/threonine protein kinase| Version = NM_001067171.1 GI:115474074 GeneID:4344287| Length = 2711 bp| ..."

2012-06-24T08:52:50Z

Created page with "{{JaponicaGene| GeneName = Os07g0678600| Description = Similar to Serine/threonine protein kinase| Version = NM_001067171.1 GI:115474074 GeneID:4344287| Length = 2711 bp| ..."

New page

{{JaponicaGene|
GeneName = Os07g0678600|
Description = Similar to Serine/threonine protein kinase|
Version = NM_001067171.1 GI:115474074 GeneID:4344287|
Length = 2711 bp|
Definition = Oryza sativa Japonica Group Os07g0678600, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
AP = Chromosome 7:29386976..29389686|
CDS = 29387228..29388559|
GCID = <gbrowseImage1>
name=NC_008400:29386976..29389686
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008400:29386976..29389686
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcggagcagagaggaaatatgttgatgaaaaagtatgagatggggaaattactcgggcaaggaacctttgccaaggtttaccatgcccgtaacaccgagacttctgagagtgttgctatcaagatgattgataaagagaaggttttgaaaggcgggctcatggatcagatcaaacgtgagatttctgtgatgaagttggtgaggcatccaaacattgtgcagttatatgaggtcatggctaccaagactaagatatattttgtgctggagcacgtcaaaggtggagagttgttcaacaaagttcagagaggaagactaaaggaagatgcagcaaggaagtacttccaacaactgatttgcgctgttgacttttgccacagcaggggtgtttatcaccgtgatttgaagccagaaaatcttcttcttgatgagaacagcaatctgaaggtttcagattttggcctaagtgctcttgctgattgcaaaagacaggatgggctgctccacacaacctgtggcacacctgcttatgttgctccagaagtgatcaacagaagaggctatgacggtgctaaggctgacatatggtcttgtggagtgatactctttgtgctattggccggctatctacctttccatgataagaacttgatggatatgtataagaagattgggaaagcagaattcaaatgtccaagttggtttaataccgatgttcgaaggctcttgctcaggatacttgatcctaacccaagtacaaggatctcaatggacaaaatcatggaaaatccttggtttaggaagggtctcgatgcaaagctgctcagatataatctacaaccaaaggatgcaattcctgttgatatgagcacagattttgactccttcaatagcgctccaacattggagaagaagccgtccaacttgaatgcttttgatataatttctttgtcaactggacttgacctctctggtatgtttgaggagtctgataagaaagagtccaaattcacatccaccagtacagcttcaacaatcatatctaagattgaggatattgccaagggcttgcggttgaagctcacaaagaaagatggtggactgttgaagatggaaggctccaagcctggaaggaaaggtgttatgggcattgatgcagagatattcgaggttaccccaaactttcatcttgtggagctaaagaagacaaatggtgatacacttgaataccgtaaggtcttgaaccaagagatgagaccagctttgaaggacatagtctgggcttggcagggtgagcaaccgaagcagcagcagcagccaacgtgctaa</cdnaseq>|
AA = <aaseq>MAEQRGNMLMKKYEMGKLLGQGTFAKVYHARNTETSESVAIKMI DKEKVLKGGLMDQIKREISVMKLVRHPNIVQLYEVMATKTKIYFVLEHVKGGELFNKV QRGRLKEDAARKYFQQLICAVDFCHSRGVYHRDLKPENLLLDENSNLKVSDFGLSALA DCKRQDGLLHTTCGTPAYVAPEVINRRGYDGAKADIWSCGVILFVLLAGYLPFHDKNL MDMYKKIGKAEFKCPSWFNTDVRRLLLRILDPNPSTRISMDKIMENPWFRKGLDAKLL RYNLQPKDAIPVDMSTDFDSFNSAPTLEKKPSNLNAFDIISLSTGLDLSGMFEESDKK ESKFTSTSTASTIISKIEDIAKGLRLKLTKKDGGLLKMEGSKPGRKGVMGIDAEIFEV TPNFHLVELKKTNGDTLEYRKVLNQEMRPALKDIVWAWQGEQPKQQQQPTC</aaseq>|
DNA = <dnaseqindica>1128..2459#attgctgcgccgtgctcgaacagatctcgatctcgatctcgatctccgcacgcaccaaggcgaagccaattccactaccaccgctcttccttcttctcactccttctcgcgactgcggcgagggtgagtctcctgtcgtgagaatttcggtctaccggcggcggcggcggcgttgggtgttcttcgcgtcgtcagacgtcgggatctggtacggttctccttatctctggttgttgataatctatatggatctatggtttgttgattcgtctgtatgtgaaaaacatcatcttgggttagcgaggggtgggtttcagattctcaggtcgagtctccagtacactggttgagtgctcgtttctagatctgtatttgttctgcaacgcgaggtgttgtggttgatgcgattcatgcgaaaacttaatctgtcatacatacttggaagggtaaaaaaagaaaaaaataatctcctttctactggagatgcatagcgtgggaattataattagcctcttgttatctgctagcctggttgttgagcgaagctttcggatccaaccttttaattcagggtagctttatgtagtacagaaaactgtgtaactgtattgtgtttcctgttactttcttttaaaacaagttctggttgaaaagcgtagaaacagtcttaactggcatgtcttgttttcatgcatatgtgctgtgcagtagattaatccttttacctagaacttctcaattgagttttatgttagttgattccaactagtagttgtccatgactgaccttattgcatcttcttcttttggcagaattactagacttccaataagaaggaaacaccttagggaatgcagaaagatgtgcttgcatgctagagagctaccttgtgagggaattggcagggtagcaagccatatttctccttccacaactcttcatgacattggaacacaagagtatatacagcgcttgctccatgtgctctcgcactatggggttcgacgtggcaactcaaccatcttcttagatcaccatcttggtggagacggttgaagtcacctatcatttctaggctcctggttaccacactttgagctttgggattactgctttctttggcgtgatggcggagcagagaggaaatatgttgatgaaaaagtatgagatggggaaattactcgggcaaggaacctttgccaaggtttaccatgcccgtaacaccgagacttctgagagtgttgctatcaagatgattgataaagagaaggttttgaaaggcgggctcatggatcagatcaaacgtgagatttctgtgatgaagttggtgaggcatccaaacattgtgcagttatatgaggtcatggctaccaagactaagatatattttgtgctggagcacgtcaaaggtggagagttgttcaacaaagttcagagaggaagactaaaggaagatgcagcaaggaagtacttccaacaactgatttgcgctgttgacttttgccacagcaggggtgtttatcaccgtgatttgaagccagaaaatcttcttcttgatgagaacagcaatctgaaggtttcagattttggcctaagtgctcttgctgattgcaaaagacaggatgggctgctccacacaacctgtggcacacctgcttatgttgctccagaagtgatcaacagaagaggctatgacggtgctaaggctgacatatggtcttgtggagtgatactctttgtgctattggccggctatctacctttccatgataagaacttgatggatatgtataagaagattgggaaagcagaattcaaatgtccaagttggtttaataccgatgttcgaaggctcttgctcaggatacttgatcctaacccaagtacaaggatctcaatggacaaaatcatggaaaatccttggtttaggaagggtctcgatgcaaagctgctcagatataatctacaaccaaaggatgcaattcctgttgatatgagcacagattttgactccttcaatagcgctccaacattggagaagaagccgtccaacttgaatgcttttgatataatttctttgtcaactggacttgacctctctggtatgtttgaggagtctgataagaaagagtccaaattcacatccaccagtacagcttcaacaatcatatctaagattgaggatattgccaagggcttgcggttgaagctcacaaagaaagatggtggactgttgaagatggaaggctccaagcctggaaggaaaggtgttatgggcattgatgcagagatattcgaggttaccccaaactttcatcttgtggagctaaagaagacaaatggtgatacacttgaataccgtaaggtcttgaaccaagagatgagaccagctttgaaggacatagtctgggcttggcagggtgagcaaccgaagcagcagcagcagccaacgtgctaaaaaactttgacaagggcaagttttttgcaatttgagtcgacttccaatcgtttatgtatttctgcagcttttgttcctcttgttattcattttcattcctcatgtattgttaatattaatatcgatgctatcttcaaatgaggatttatttgaaaaaaatgttgagtttgtttctggatgttactgtttttgctcatggagaactgtaatactgacatttttcatttatcatgacgcaaaaagatgcatatt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001067171.1 RefSeq:Os07g0678600]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 7]]
[[Category:Chromosome 7]]

← Older revision		Revision as of 06:20, 29 January 2015
Line 12:		Line 12:
	[[File: OsCIPK2 Expression1.png\|right\|thumb\|250px\|'''Figure 1.''' Validation of diurnal expression patterns for OsCIPK2.(from reference <ref name="ref3"/>).'']]		[[File: OsCIPK2 Expression1.png\|right\|thumb\|250px\|'''Figure 1.''' Validation of diurnal expression patterns for OsCIPK2.(from reference <ref name="ref3"/>).'']]

−	*By the RT-PCR-based cDNA cloning approach, '''15''' CIPK genes were cloned from stress-treated seedlings of Nipponbare. Among them, '''10''' genes (''OsCIPK2'', [[Os01g0206700\|''OsCIPK5'']], [[Os03g0339900\|''OsCIPK10'']], ''OsCIPK11'', ''OsCIPK12'', [[Os12g0113500\|''OsCIPK14'']], [[Os11g0113700\|''OsCIPK15'']], [[Os05g0332300\|''OsCIPK18'']], [[Os06g0543400\|''OsCIPK25'']] and [[Os02g0161000\|''OsCIPK26'']]) were '''intron-less''', and other '''five''' genes ([[Os01g0292200\|''OsCIPK1'']], [[Os03g0319400\|''OsCIPK3'']], [[Os03g0634400\|''OsCIPK7'']], [[Os07g0150700\|''OsCIPK23'']] and [[Os06g0606000\|''OsCIPK24'']]) were '''intron-rich''', consistent with the previous data<ref name="ref1"/><ref name="ref2"/>.	+	*By the RT-PCR-based cDNA cloning approach, '''15''' CIPK genes were cloned from stress-treated seedlings of Nipponbare. Among them, '''10''' genes (''OsCIPK2'', [[Os01g0206700\|''OsCIPK5'']], [[Os03g0339900\|''OsCIPK10'']], ''OsCIPK11'', [[Os01g0759400\|''OsCIPK12'']], [[Os12g0113500\|''OsCIPK14'']], [[Os11g0113700\|''OsCIPK15'']], [[Os05g0332300\|''OsCIPK18'']], [[Os06g0543400\|''OsCIPK25'']] and [[Os02g0161000\|''OsCIPK26'']]) were '''intron-less''', and other '''five''' genes ([[Os01g0292200\|''OsCIPK1'']], [[Os03g0319400\|''OsCIPK3'']], [[Os03g0634400\|''OsCIPK7'']], [[Os07g0150700\|''OsCIPK23'']] and [[Os06g0606000\|''OsCIPK24'']]) were '''intron-rich''', consistent with the previous data<ref name="ref1"/><ref name="ref2"/>.

← Older revision		Revision as of 06:17, 29 January 2015
Line 12:		Line 12:
	[[File: OsCIPK2 Expression1.png\|right\|thumb\|250px\|'''Figure 1.''' Validation of diurnal expression patterns for OsCIPK2.(from reference <ref name="ref3"/>).'']]		[[File: OsCIPK2 Expression1.png\|right\|thumb\|250px\|'''Figure 1.''' Validation of diurnal expression patterns for OsCIPK2.(from reference <ref name="ref3"/>).'']]

−	*By the RT-PCR-based cDNA cloning approach, '''15''' CIPK genes were cloned from stress-treated seedlings of Nipponbare. Among them, '''10''' genes (~~[[Os07g0678600\|~~''OsCIPK2'']], [[Os01g0206700\|''OsCIPK5'']], [[Os03g0339900\|''OsCIPK10'']], ''OsCIPK11'', ''OsCIPK12'', [[Os12g0113500\|''OsCIPK14'']], [[Os11g0113700\|''OsCIPK15'']], [[Os05g0332300\|''OsCIPK18'']], [[Os06g0543400\|''OsCIPK25'']] and [[Os02g0161000\|''OsCIPK26'']]) were '''intron-less''', and other '''five''' genes ([[Os01g0292200\|''OsCIPK1'']], [[Os03g0319400\|''OsCIPK3'']], [[Os03g0634400\|''OsCIPK7'']], [[Os07g0150700\|''OsCIPK23'']] and [[Os06g0606000\|''OsCIPK24'']]) were '''intron-rich''', consistent with the previous data<ref name="ref1"/><ref name="ref2"/>.	+	*By the RT-PCR-based cDNA cloning approach, '''15''' CIPK genes were cloned from stress-treated seedlings of Nipponbare. Among them, '''10''' genes (''OsCIPK2'', [[Os01g0206700\|''OsCIPK5'']], [[Os03g0339900\|''OsCIPK10'']], ''OsCIPK11'', ''OsCIPK12'', [[Os12g0113500\|''OsCIPK14'']], [[Os11g0113700\|''OsCIPK15'']], [[Os05g0332300\|''OsCIPK18'']], [[Os06g0543400\|''OsCIPK25'']] and [[Os02g0161000\|''OsCIPK26'']]) were '''intron-less''', and other '''five''' genes ([[Os01g0292200\|''OsCIPK1'']], [[Os03g0319400\|''OsCIPK3'']], [[Os03g0634400\|''OsCIPK7'']], [[Os07g0150700\|''OsCIPK23'']] and [[Os06g0606000\|''OsCIPK24'']]) were '''intron-rich''', consistent with the previous data<ref name="ref1"/><ref name="ref2"/>.

@@ Line 12: / Line 12: @@
 [[File: OsCIPK2 Expression1.png|right|thumb|250px|'''Figure 1.''' Validation of diurnal expression patterns for OsCIPK2.(from reference <ref name="ref3"/>).'']]
-*By the RT-PCR-based cDNA cloning approach, '''15''' CIPK genes were cloned from stress-treated seedlings of Nipponbare. Among them, '''10''' genes ([[Os07g0678600|''OsCIPK2'']], [[Os01g0206700|''OsCIPK5'']], [[Os03g0339900|''OsCIPK10'']], ''OsCIPK11'', ''OsCIPK12'', [[Os12g0113500|''OsCIPK14'']], [[Os11g0113700|''OsCIPK15'']], [[OOs05g0332300|''OsCIPK18'']], [[Os06g0543400|''OsCIPK25'']] and [[Os02g0161000|''OsCIPK26'']]) were '''intron-less''', and other '''five''' genes ([[Os01g0292200|''OsCIPK1'']], [[Os03g0319400|''OsCIPK3'']], [[Os03g0634400|''OsCIPK7'']], [[Os07g0150700|''OsCIPK23'']] and [[Os06g0606000|''OsCIPK24'']]) were '''intron-rich''', consistent with the previous data<ref name="ref1"/><ref name="ref2"/>.
+*By the RT-PCR-based cDNA cloning approach, '''15''' CIPK genes were cloned from stress-treated seedlings of Nipponbare. Among them, '''10''' genes ([[Os07g0678600|''OsCIPK2'']], [[Os01g0206700|''OsCIPK5'']], [[Os03g0339900|''OsCIPK10'']], ''OsCIPK11'', ''OsCIPK12'', [[Os12g0113500|''OsCIPK14'']], [[Os11g0113700|''OsCIPK15'']], [[Os05g0332300|''OsCIPK18'']], [[Os06g0543400|''OsCIPK25'']] and [[Os02g0161000|''OsCIPK26'']]) were '''intron-less''', and other '''five''' genes ([[Os01g0292200|''OsCIPK1'']], [[Os03g0319400|''OsCIPK3'']], [[Os03g0634400|''OsCIPK7'']], [[Os07g0150700|''OsCIPK23'']] and [[Os06g0606000|''OsCIPK24'']]) were '''intron-rich''', consistent with the previous data<ref name="ref1"/><ref name="ref2"/>.
@@ Line 19: / Line 19: @@
 *''OsCIPK02'' showed ubiquitous expression in all tissues/organs<ref name="ref3"/>, ''OsCIPK02'' containing DRE in their promoter regions was actually '''induced by drought'''<ref name="ref2"/>.
 *Real-time RT-PCR analysis confirmed the diurnal expression patterns showing a peak at daytime and a downregulation in the ''osgi'' mutant for the three marker genes and nine of the ''OsCIPK'' genes, ''OsCIPK02'' is a member of these nine genes (Fig. 1), which indicating that ''OsCIPK02'' might function downstream of ''OsGI''<ref name="ref3"/>.
 ===Evolution===

@@ Line 25: / Line 25: @@
 ===Knowledge Extension===
-[[File: OsCIPK family Functional.png|right|thumb|300px|'''Figure 1.''' ''Functional gene network analysis of OsCIPK family members.(from reference <ref name="ref3"/>).'']]
+[[File: OsCIPK family Functional.png|right|thumb|300px|'''Figure 2.''' ''Functional gene network analysis of OsCIPK family members.(from reference <ref name="ref3"/>).'']]
 *From real-time RT-PCR analyses, ''Giong et al.'' identified 16 OsCIPK genes showing a significant up- or down-regulation in response to '''drought stress'''. Using the probable functional gene network tool, RiceNet, ''Giong et al.'' generated a hypothetical functional gene network based on 15 out of 16 OsCIPK proteins (Fig. 2)<ref name="ref3"/>.
 *More than 200 interactions mediated by these OsCIPK proteins. This network was further refined by integrating fold change data showing at least 1 log2-fold up-regulation (red colored nodes in Fig. 2) or less than -1 log2-fold down-regulation (green colored nodes in Fig. 2) under drought stress to all the elements in this network<ref name="ref3"/>.

@@ Line 28: / Line 28: @@
 *From real-time RT-PCR analyses, ''Giong et al.'' identified 16 OsCIPK genes showing a significant up- or down-regulation in response to '''drought stress'''. Using the probable functional gene network tool, RiceNet, ''Giong et al.'' generated a hypothetical functional gene network based on 15 out of 16 OsCIPK proteins (Fig. 2)<ref name="ref3"/>.
 *More than 200 interactions mediated by these OsCIPK proteins. This network was further refined by integrating fold change data showing at least 1 log2-fold up-regulation (red colored nodes in Fig. 2) or less than -1 log2-fold down-regulation (green colored nodes in Fig. 2) under drought stress to all the elements in this network<ref name="ref3"/>.
-*Integrated subcellular localization data further enhances the feasibility of functional
+*Integrated subcellular localization data further enhances the feasibility of functional modules consisting of co-expressed functional groups such as CIPK and PPC and other components in the network(Fig. 1)<ref name="ref3"/>.
 *The calcineurin B-like protein–CBL-interacting protein kinase ('''CBL–CIPK''') signaling pathway in plants is a Ca<sup>2+</sup>-related pathway that responds strongly to both abiotic and biotic environmental stimuli<ref name="ref4"/>. The CBL-CIPK system shows variety, specificity, and complexity in response to different stresses, and the CBL–CIPK signaling pathway is regulated by complex mechanisms in plant cells<ref name="ref4"/>.

@@ Line 56: / Line 56: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]

@@ Line 53: / Line 53: @@
 * <ref name="ref4">
 Yu Q, An L, Li W. The CBL–CIPK network mediates different signaling pathways in plants[J]. Plant cell reports, 2014, 33(2): 203-214.
 </ref>
 </references>

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+'''''OsCIPK2(OsCIPK02)''''' is a member of '''CIPK genes''' (CIPKs,calcineurin B-like protein interacting protein kinases)<ref name="ref1"/><ref name="ref2"/>.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+*Interestingly, five ''OsCIPK'' genes, [[Os01g0292200|''OsCIPK1'']], ''OsCIPK2'', [[Os03g0339900|''OsCIPK10'']], ''OsCIPK11'' and [[Os01g0759400|''OsCIPK12'']], were transcriptionally '''up-regulated''' after '''bacterial blight infection'''<ref name="ref1"/><ref name="ref2"/>.
 ===Expression===
-Please input expression information here.
+[[File: OsCIPK2 Expression1.png|right|thumb|250px|'''Figure 1.''' Validation of diurnal expression patterns for OsCIPK2.(from reference <ref name="ref3"/>).'']]
 ===Evolution===
-Please input evolution information here.
+''OsCIPK02'' belongs to '''subgroup III''', the others are: ''OsCIPK05'', ''OsCIPK10'', ''OsCIPK11'', ''OsCIPK14'', ''OsCIPK15'', ''OsCIPK18'', ''OsCIPK20'', ''OsCIPK26'', and ''OsCIPK28''<ref name="ref3"/>.
-You can also add sub-section(s) at will.
+*The calcineurin B-like protein–CBL-interacting protein kinase ('''CBL–CIPK''') signaling pathway in plants is a Ca<sup>2+</sup>-related pathway that responds strongly to both abiotic and biotic environmental stimuli<ref name="ref4"/>. The CBL-CIPK system shows variety, specificity, and complexity in response to different stresses, and the CBL–CIPK signaling pathway is regulated by complex mechanisms in plant cells<ref name="ref4"/>.
 ==Labs working on this gene==
-Please input related labs here.
+*National Center of Plant Gene Research (Wuhan), National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==

← Older revision		Revision as of 20:42, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os07g0678600\|		GeneName = Os07g0678600\|