Os07g0693800 - Revision history

Xysj2012: /* Structured Information */

2015-06-12T08:50:33Z

‎Structured Information

Zhangye at 02:00, 24 March 2015

2015-03-24T02:00:00Z

Zhangye at 01:58, 24 March 2015

2015-03-24T01:58:51Z

124.16.129.48 at 20:42, 22 July 2012

2012-07-22T20:42:52Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os07g0693800| Description = Similar to Fatty acid desaturase (Fragment)| Version = NM_001067268.1 GI:115474268 GeneID:4344389| Length = 2836 bp|..."

2012-06-24T08:54:22Z

Created page with "{{JaponicaGene| GeneName = Os07g0693800| Description = Similar to Fatty acid desaturase (Fragment)| Version = NM_001067268.1 GI:115474268 GeneID:4344389| Length = 2836 bp|..."

New page

{{JaponicaGene|
GeneName = Os07g0693800|
Description = Similar to Fatty acid desaturase (Fragment)|
Version = NM_001067268.1 GI:115474268 GeneID:4344389|
Length = 2836 bp|
Definition = Oryza sativa Japonica Group Os07g0693800, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
AP = Chromosome 7:30191443..30194278|
CDS = 30191485..30191906,30191994..30192150,30192255..30192347,30192490..30192675,30192844..30192924<br>,30193525..30193662,30193781..30193945|
GCID = <gbrowseImage1>
name=NC_008400:30191443..30194278
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008400:30191443..30194278
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcccggctgctactctccggcgtcgcgccgctccccctcctcccctgccgccgtcgcgccattgcatttgcgctcccacttgggaatgtccgcctccgcctccgtgtggccgcacccaccagccgcgtggccaccgtggaggaggacgacaatgaaaataatgctcctcctcctccttgtgaggacttcgacccgggcgcggcgcccccgtttggtctggccgacatccgcgccgctatccccaagcactgttgggtgaaggacccctggcgatccatggggtacgtgctgcgcgacgtggtggtggtgttcgccctcgctgccgccgccgcgcgcctccacagctgcctcgcctggccgctctactgggcggcgcagggaaccatgttctgggcgctcttcgtcctcggccacgactgcgggcacgggagcttctccaacaactcgaggctcaacagcgtgatgggccacatactccactcctccatcctcgtaccctaccatggctggaggattagccacaggacgcatcatcagaaccatggccatgtcgacaaggatgagtcctggcatcccctccccgagcggctgtacaggagccttaacagagccacccggatgctccgcttctccatacccttccccatgctcgcctacccattctacctgtggtctcggagcccaggaaagtctggttcgcatttccatcccagcagcgacctgttccagcccaacgaaaggaacgatgtgctgacatccacagcgtgctgggtggccatggctgccctcctcgcaggcctcaccttcctcatgggacccctcctcatgctcaacctctactttgtcccttactggatttttgttatgtggctggacttcgtcacctacttgcaccatcacggccacaacgacaagctgccctggtaccgtggcaaggaatggagctatttgcggggaggactgacgacagtggacagggactatgggtggatcaacaacatccaccacgacatcgggacacatgtcattcaccatcttttcccccaaatcccgcattaccatctaattgaggcgacggaagcagcaaagggtgtgatggggaaatactacagggagccggacaagtctgggccttttcccttacacctgtttggagcgctgtcccggagcttgaaacgcgaccactatgtcagcgacaccggagatgtggtctactaccagaccgaccctgctaactaa</cdnaseq>|
AA = <aaseq>MARLLLSGVAPLPLLPCRRRAIAFALPLGNVRLRLRVAAPTSRV ATVEEDDNENNAPPPPCEDFDPGAAPPFGLADIRAAIPKHCWVKDPWRSMGYVLRDVV VVFALAAAAARLHSCLAWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSRLNSVMGHIL HSSILVPYHGWRISHRTHHQNHGHVDKDESWHPLPERLYRSLNRATRMLRFSIPFPML AYPFYLWSRSPGKSGSHFHPSSDLFQPNERNDVLTSTACWVAMAALLAGLTFLMGPLL MLNLYFVPYWIFVMWLDFVTYLHHHGHNDKLPWYRGKEWSYLRGGLTTVDRDYGWINN IHHDIGTHVIHHLFPQIPHYHLIEATEAAKGVMGKYYREPDKSGPFPLHLFGALSRSL KRDHYVSDTGDVVYYQTDPAN</aaseq>|
DNA = <dnaseqindica>43..464#552..708#813..905#1048..1233#1402..1482#2083..2220#2339..2503#agcttaccaataccaattggagtagaaccaaccaaggaaagaatggcccggctgctactctccggcgtcgcgccgctccccctcctcccctgccgccgtcgcgccattgcatttgcgctcccacttgggaatgtccgcctccgcctccgtgtggccgcacccaccagccgcgtggccaccgtggaggaggacgacaatgaaaataatgctcctcctcctccttgtgaggacttcgacccgggcgcggcgcccccgtttggtctggccgacatccgcgccgctatccccaagcactgttgggtgaaggacccctggcgatccatggggtacgtgctgcgcgacgtggtggtggtgttcgccctcgctgccgccgccgcgcgcctccacagctgcctcgcctggccgctctactgggcggcgcagggaaccatgttctgggcgctcttcgtcctcggccacgactggtacgacggtattcatttccattttgattcctactccactctactacactagtagtaattaattcgttcatggaattggaattgcagcgggcacgggagcttctccaacaactcgaggctcaacagcgtgatgggccacatactccactcctccatcctcgtaccctaccatggctggaggattagccacaggacgcatcatcagaaccatggccatgtcgacaaggatgagtcctggcatcccgtacgcattccttccttccttctcgatttcactacttaattgcaactactccagttgggtttccccattgcaaatgaatctgatcaatccaatccaaaatgcagctccccgagcggctgtacaggagccttaacagagccacccggatgctccgcttctccatacccttccccatgctcgcctacccattctacctggttaattaattgctactctagtactctactaatattactagcataacaatgtactctacgttcattattccattatatatatttatatgtgatgtgatgattaagacgatgatgaatggatggatatattgcatgcatgcagtggtctcggagcccaggaaagtctggttcgcatttccatcccagcagcgacctgttccagcccaacgaaaggaacgatgtgctgacatccacagcgtgctgggtggccatggctgccctcctcgcaggcctcaccttcctcatgggacccctcctcatgctcaacctctactttgtcccttactgggtacgtagttaccccctacatacatacgttggttcattgatgtgatctgtggattgggttcctctatcctctgcctgccctcgatctcctcttttgtggatgtggggaacaaaacctaccttgctttcttttctcatcagtttgtatttcaattctacttctctgcagatttttgttatgtggctggacttcgtcacctacttgcaccatcacggccacaacgacaagctgccctggtaccgtggcaaggtccgtttaactaattactaacattttttactatcaattactattagacgacatgcatatatacatcatttcttctctctaattaaactcgctcacactatatgcatgcttaatatattcagaaatcaagcaatatatatgtatgcatggctcacacactgaatgaataagctaggttgcaacttttatttatgccgttggatctagtaatcgattgattgcagtacgtagaaaaaaaaagattaggcataactaccttgtcaaaaatagtcaatttaggaagggactttgacctgagcctgtgattaaacgagtcatagaaactagatgataatgcaaagatgcgatcttctgtccacaaaaaatcacaatacgttgtggtccatgatgcaaatgcaagttggatcacaacttttgtatacatgcatctttttcctagagagctgcatcgttttcagaattcatactgtgaggcagtgaatttttttcttttttttttctttagaaaatgttcgtaggcagagaattactcaaggaaatccaaataataataatctcacttttgcacttttgtactgaatagattgatgatatgtacaggaatggagctatttgcggggaggactgacgacagtggacagggactatgggtggatcaacaacatccaccacgacatcgggacacatgtcattcaccatcttttcccccaaatcccgcattaccatctaattgaggcggtaagctctagtctctgcagtgcatgcggagtactagtaattaaattatgctatgtgatgtttatcagtacgtagtgctgagtaattactaagaagcatgggtgatgaaaatgtgcagacggaagcagcaaagggtgtgatggggaaatactacagggagccggacaagtctgggccttttcccttacacctgtttggagcgctgtcccggagcttgaaacgcgaccactatgtcagcgacaccggagatgtggtctactaccagaccgaccctgctaactaaattaattttacatttccttcaattcttttaagcccggaggcttaaattagcttaattagatagctgcgactgacctggacatgtattcaacattcgatccacagacagatagaaagagacctatatatatcgccgatcaatcgatatatatgtgcgtgtccgtgtggagatatggaggtcacaattctttccatggatatataggagtatacatacatgtattgaaggatatgtagctagatttgatgtgcgtgcgtgctgtactttgtaagacgcagcataaagctagtgacaatttggacaaggccatattgatatatccattatatacac</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001067268.1 RefSeq:Os07g0693800]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 7]]
[[Category:Chromosome 7]]

@@ Line 1: / Line 1: @@
-'''''Osfad8''''' is a '''putative rice chloroplast x-3 desaturase gene''' in rice<ref name="ref1"/>.
+'''''OsFAD8''''' is a '''putative rice chloroplast x-3 desaturase gene''' in rice<ref name="ref1"/>.
 ==Annotated Information==
 ===Function===
-Osfad8, '''encoding a chloroplast x-3 fatty acid desaturase''' responsible for '''trienoic fatty acid formation'''<ref name="ref1"/>. Characterization of OsFAD8 suggests that it has a functional role in '''maintaining levels of trienoic fatty acids''' and '''stress tolerance at low temperatures'''<ref name="ref2"/>.
+OsFAD8, '''encoding a chloroplast x-3 fatty acid desaturase''' responsible for '''trienoic fatty acid formation'''<ref name="ref1"/>. Characterization of OsFAD8 suggests that it has a functional role in '''maintaining levels of trienoic fatty acids''' and '''stress tolerance at low temperatures'''<ref name="ref2"/>.

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+'''''Osfad8''''' is a '''putative rice chloroplast x-3 desaturase gene''' in rice<ref name="ref1"/>.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+Osfad8, '''encoding a chloroplast x-3 fatty acid desaturase''' responsible for '''trienoic fatty acid formation'''<ref name="ref1"/>. Characterization of OsFAD8 suggests that it has a functional role in '''maintaining levels of trienoic fatty acids''' and '''stress tolerance at low temperatures'''<ref name="ref2"/>.
 ===Expression===
-Please input expression information here.
+*'''Southern blot hybridization''' indicated that '''a small gene family''' composed of '''two copies or closely linked genes exists'''. RNA in situ hybridization showed that the '''accumulation of Osfad8 mRNA''' was '''abundant''' in '''leaves''' but hardly detectable in roots. The Osfad8 transcript level in leaves was '''much higher''' at 15°C than at normal temperature (25°C). In situ hybridization also showed particularly prominent expression of Osfad8 in the palisade layer and spongy parenchyma cells of leaves when exposed to 15°C conditions for 5 days and 10 days<ref name="ref1"/>.
 ===Evolution===
-Please input evolution information here.
+[[File: OsFAD8 phylogenic1.jpg|right|thumb|250px|'''Figure 1.''' ''A molecular phylogenetic tree of deduced amino acid sequences of Osfad8 from rice and the x-3 fatty acid desaturase from several other plant species.(from reference <ref name="ref1"/>).'']]
-You can also add sub-section(s) at will.
+*OsFAD8 is '''most closely related to TaFAD7''' from wheat and '''shares approximately 81% identity'''. BLAST analysis showed that the deduced amino acid sequence of OsFAD8 has '''more than 80% similarity''' with those of FAD7 and FAD8. Rice x-3 desaturase gene is of high likelihood the homologous rice fad8 gene<ref name="ref1"/>. ''OsFAD7'' having '''78% similarity''' with ''OsFAD8'', in the rice genome<ref name="ref2"/>.
 ==Labs working on this gene==
-Please input related labs here.
+*Department of Biological Sciences, Pusan National University, Pusan, Republic of Korea
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==

← Older revision		Revision as of 20:42, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os07g0693800\|		GeneName = Os07g0693800\|

@@ Line 49: / Line 49: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]