Os08g0139000 - Revision history

Xysj2012: /* Structured Information */

2015-06-12T09:25:49Z

‎Structured Information

Zhangye at 02:38, 24 March 2015

2015-03-24T02:38:49Z

124.16.129.48 at 20:44, 22 July 2012

2012-07-22T20:44:17Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os08g0139000| Description = Similar to RNA-binding glycine rich protein (RGP-2)| Version = NM_001067499.1 GI:115474734 GeneID:4344631| Length = ..."

2012-06-21T12:46:33Z

Created page with "{{JaponicaGene| GeneName = Os08g0139000| Description = Similar to RNA-binding glycine rich protein (RGP-2)| Version = NM_001067499.1 GI:115474734 GeneID:4344631| Length = ..."

New page

{{JaponicaGene|
GeneName = Os08g0139000|
Description = Similar to RNA-binding glycine rich protein (RGP-2)|
Version = NM_001067499.1 GI:115474734 GeneID:4344631|
Length = 3319 bp|
Definition = Oryza sativa Japonica Group Os08g0139000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
AP = Chromosome 8:2172732..2176050|
CDS = 2172986..2173111,2174690..2174796,2174883..2174951,2175889..2176012|
GCID = <gbrowseImage1>
name=NC_008401:2172732..2176050
source=RiceChromosome08
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008401:2172732..2176050
source=RiceChromosome08
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcggcggcggctacggcgaggtccggattccggcgcatgttctccatctcggccttctccccgcccaagccgcccaccccgcccccgaaggccgacccctcccccaacctcttcatctcaggcttaagcaagcgtacaacaacagatgggcttaaagaagcttttgcaaagtttggggaagtcatacatgctcgagttgtcacagatcgtgtcactggattctctaaggggtttggcttcgtaaggtatgctacagttgaggatgcagctaaaggaatagaaggaatggatggaaagtttctcgatggatgggttatttttgctgaatatgctagacccagaacaccaccgcagcaaccagaaatgaactcacagccacaacaatcatggggccctccatccagttcctggggtgcacagtag</cdnaseq>|
AA = <aaseq>MAAAATARSGFRRMFSISAFSPPKPPTPPPKADPSPNLFISGLS KRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGMDGKFL DGWVIFAEYARPRTPPQQPEMNSQPQQSWGPPSSSWGAQ</aaseq>|
DNA = <dnaseqindica>2940..3065#1255..1361#1100..1168#39..162#ctagcttctcacctcaccttcgaaatccggcggcggcgatggcggcggcggctacggcgaggtccggattccggcgcatgttctccatctcggccttctccccgcccaagccgcccaccccgcccccgaaggccgacccctcccccaacctcttcatctcaggtacgcctcactttctctctctctctccctcttcttgggcggcggccgtagaagtgctcccgttgcgttgccgtacccgattcggtcgtgtggatgatctaggatggcttaatttagaggatctcatggtggttgcacttttgggcggtcaaaagcaacattagagtatactagtatgtatatatatgttgttagtactaattcaatgtctgatggatttgggctgcttgattcgtatgagcaaaatcaggggagataagatcatatggtagtaagacatatagtggatactgatatgttgtgaagttagtataatcttttgatgtttctagatgtaactttatactgactgctcctctatatattagtttgttacttagtggaggatataggatataggacggatctaggacgccggtggaatgactgatgaaccagctgtacatcagcctaggttgaaagagacctattgctggatttgctggttcagattatgatagcaaacgtcgtacccctccaccttctgttcatggaacttgattcaattagttttacgaacaattgagtccatgcccaataagctcaggtcttcggcgttttccacacttgctgcttgcttgattctacatgctcgacacaaggaaattcactgcgggaactgaggaaatggacaatcacttaataaacattatttaaattttgtctacttatggtgctctgacctaaattccttatctgtagtgacaaaatgtgtgcaagctttctgagcttgtactccatattattatcggacctacttaaagctagcaccagttccctgttttaccgtcttacaatttaaagttcaataatgttgttccattttggatgcttccttgcatgttgagccttgttgcacacaatctctggactcccatcttagcatccttgtttgcaggcttaagcaagcgtacaacaacagatgggcttaaagaagcttttgcaaagtttggggaagtcatacatggtatgtttgcttaaaatgcagccattcctttcatcctttgtatttcaagacactgagttctatttcaatctgatttcaaattgcagctcgagttgtcacagatcgtgtcactggattctctaaggggtttggcttcgtaaggtatgctacagttgaggatgcagctaaaggaatagaaggaatggatggaaaggtatgtttcatactttcatatcatttttgttgttaggatttgttgttttttcctcaattctcttgtgttgaactctcactgtttatataatgatcagttcccatgatgcaataagcagaatatatgaccttacctctctacttgttatgcctcattttaaaaattttaatacaagaactgcctaatttcactggctgccactggaaaggcggaaacagtaagaaagctagttttgtattggagcataggcagttaatatatacacagaattgatttgattatgtggaattcagagaaagcaggacaagttggagaggtaggtagagcccagggagcctgcttaggcaccctttgtcaacagactatttcaaactaaatatgttgtagaattattcaggtatctcattttgacagtaccgaagtatagatatttgcatcctagttgaccagaaactgtgagcgtatgttcgttgtgcaatactatagtagtactatttaataacttggacatgctatggggtggacatcataggcatcacatttttctggacattttatcctgagattgaaattgagagcatcgtggtcactcaggtttactctttgtgttttgcacaagcagacagggcatgtgttaccacttttcaagttcatgtgtaagttttttttattatgatattggtagcacaatttgctaactacctaaggtctcaccacaattcaactctgatatattttgcacacattctttcttgttgtgctcatctctgaagaacaaaaatgcaaaaaaaaatgttcattattttaaaaataattatgtgtgaataatccagaattactatgtgcaagattcttaagaacacagatatcagcctcatgcactcatttcatatagcttgtattgtgctagatgctggatatcttgataaatttctgtggtaatttttaaggtatacgctaaccttttaatgctcaagtataatagttacattgttttcttacatgttatcgctgtgacttgtgacttgtgttgcttcgttgcaactggcaaatcatgaaccgtactcagacatgcttggactgatttcttcaacaaaaatcgtgaactggtggttctgcactgtctttagaatcttaatacaaatttgcattctggtatcttgtttttatttttgctttatatttagatactaaaatattttactctgtatgtttcctcattagcaatgatactccatatttttcttaattcattcttgaattcttgtggcaccaaagcaatacttcacacataatgtaagaaaattacgtatgtgatacactaactattgcccacatgaccctcatgctataatttatgctttcttgaatggctgagctctcaattatttatttattttttcagtctactaatttctaccatagtgaaaataaaatgaagcgtttatttggtgtggttagatactctgaaagcaactggtgaaaatatcattgaccattttgggcttctttttagagccttgctgcagtatatcataatgcacaggttttttctgatatatctctgcttctatgcagtttctcgatggatgggttatttttgctgaatatgctagacccagaacaccaccgcagcaaccagaaatgaactcacagccacaacaatcatggggccctccatccagttcctggggtgcacagtagatgaagatacaatcttggggccctctatctggccgtggggctcacagcggatcgacaagttattgattctatatttagtttatcgctataccatattgttccaggtgtgaacagagtttccgatccaatattcttatcgtgttggagtggtcgtttgcttgcatcccatggtttccgcatggagaagcacttgtcaaactgaatatggaccaaacaatattactatcaacgcgcaacaggacacgaacagcttc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001067499.1 RefSeq:Os08g0139000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 8]]
[[Category:Chromosome 8]]

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+'''''OsDEG10''''' is a '''small RBP''' involved in the '''response to various abiotic stresses'''<ref name="ref1"/>.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+A rice small RBP, OsDEG10, might play important roles in the response to various abiotic stresses such as '''high light''', '''anoxia''', '''high salt''', '''cold''' and '''ROS stresses'''<ref name="ref1"/>.
 ===Expression===
-Please input expression information here.
+Interestingly, the expression of OsDEG10, a small RBP group gene, '''increased under various abiotic stress conditions''' such as '''photooxidation''', '''anoxia''', '''osmotic''', '''ROS''' and '''cold stresses''', and OsDEG10 RNAi transgenic plants were sensitive to high light and cold stresses, which suggest that OsDEG10 is involved in the response to various abiotic stresses in rice<ref name="ref1"/>.
 ===Evolution===
-Please input evolution information here.
+'''Protein motif''' and '''BlastP analysis''' results of OsDEG10 indicate that OsDEG10 '''belongs to small RBP group''', which is reported to include '''15 small RBPs''' in ''Arabidopsis''<ref name="ref1"/><ref name="ref2"/>. Rice OsDEG10 '''homologs''': Os07g36490 and Os03g17060, showing '''high similarity''' with OsDEG10 from database<ref name="ref1"/>.
-You can also add sub-section(s) at will.
+*The ''Arabidopsis'' genome encodes 196 RRM-containing proteins, a more complex set than found in Caenorhabditis elegans and Drosophila melanogaster. In addition, the Arabidopsis genome contains 26 KH domain proteins. Most of the ''Arabidopsis'' RRM-containing proteins can be classified into structural and/or functional groups, based on similarity with either known metazoan or ''Arabidopsis'' proteins<ref name="ref2"/>.
 ==Labs working on this gene==
-Please input related labs here.
+*Department of Biological Sciences, Pusan National University, San 30, Jangjeon-dong, Geumjeong-gu, Busan 609-735, Republic of Korea
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==

← Older revision		Revision as of 20:44, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os08g0139000\|		GeneName = Os08g0139000\|

@@ Line 44: / Line 44: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]