Os08g0540400 - Revision history

Rice2012: /* Structured Information */

2015-06-12T09:34:31Z

‎Structured Information

Zhangye at 15:38, 28 January 2015

2015-01-28T15:38:55Z

Zhangye: /* Evolution */

2015-01-05T05:10:16Z

‎Evolution

Zhangye: /* Function */

2015-01-05T05:05:48Z

‎Function

Zhangye: /* Function */

2015-01-05T04:47:43Z

‎Function

Zhangye at 04:46, 5 January 2015

2015-01-05T04:46:22Z

124.16.129.48 at 20:53, 22 July 2012

2012-07-22T20:53:46Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os08g0540400| Description = Similar to Calcium-dependent protein kinase| Version = NM_001068918.1 GI:115477574 GeneID:4346187| Length = 4244 bp|..."

2012-06-21T13:10:37Z

Created page with "{{JaponicaGene| GeneName = Os08g0540400| Description = Similar to Calcium-dependent protein kinase| Version = NM_001068918.1 GI:115477574 GeneID:4346187| Length = 4244 bp|..."

New page

{{JaponicaGene|
GeneName = Os08g0540400|
Description = Similar to Calcium-dependent protein kinase|
Version = NM_001068918.1 GI:115477574 GeneID:4346187|
Length = 4244 bp|
Definition = Oryza sativa Japonica Group Os08g0540400, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
AP = Chromosome 8:27143096..27147339|
CDS = 27143302..27143655,27144921..27145088,27145174..27145289,27145400..27145552,27146097..27146238<br>,27146333..27146458,27146579..27147217|
GCID = <gbrowseImage1>
name=NC_008401:27143096..27147339
source=RiceChromosome08
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008401:27143096..27147339
source=RiceChromosome08
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggggggctgctactccgcctacgcctcctcgcgcaagctgcgcggccgcatcagcaagatctccctcgtcatccccgacccggtccccgacgccgaggccgcctcgccgcgcaaggacggcgtcgatggcgacggcgacgacgtgaggggtggtggtggtggctgtgacgatggcggtgacgtcgtcgccatcgcgacgacgacggcggacgagttcgcgcggcggtacgtgctggggaaggagctggggcgcggggagttcggggtgacgcggcggtgcagcgacgcggcgaccggggaggcgctggcgtgcaagacgatccggaagcacaggcgcctggcgccgccgcgggtgaccgcggcgaaggcggcggccgcgcacggggaggacgtgaagagggaggtggccatcatgcggcgcatgtcgtcggcgtcgtcgtcgcgcgggggcggcgccgcgtcgtccgccgccgtggtgcggctccgcgaggcatgcgaggacgccgccgacggctccgtccacctcgtcatggagctctgcgagggcggcgagctgttcgaccgcatcgtggcgcgcggacactactccgagcgcgccgccgccaacatcttccgcaccatcgtcgacgtcgtccagctgtgccactcgaacggggtgatacaccgcgatctgaagccggagaacttcctgttcgcgaacaaatcggaggactcgccgctcaaggtcatcgacttcggcctctcggtgttcttcaagccaggcgaccggttcacggaggtggtggggagcgcgtactacatggcgccggaggtattgcggcggagctacgggccggaggtggacgtgtggagcgccggcgtcatcctctacatcctcctctgcggcgtccctccattctggggagacaacgacgagaagatcgcgcaggcgatcctccgcggcgccatcgacttcaacagggagccattgccgagggtctccgccaacgccaaggacctcgtcaggaggatgcttgatcctaacccatccacccgcctgacggccaaacaagttcttgagcatccatggctgaagaacgcggacacggcgccgaacgtgtcgctgggcgacgccgtgcgggcgaggctgcagcagttctccgccatgaacaagttcaagaagaaggctctcggagtggtggcgcggaacctgccgggggaggaggtggacaagtacgtgcagatgttccaccacatggacaaggacaagaacgggcacctgtcgctcgacgaactcttggaaggcctccacatcaacggccagcccgtccccgagcccgagatcaggatgctactcgaagccgcggacacggacgggaacgggacgctggactgcgacgagttcgtgacggtgtcggtgcacctgaagaagatgagcaacgacgagtacctggcggcggcgttcaactacttcgacaaggacggcagcgggttcatcgagctggacgagctgcgggaggaggtgggcccaaacgagcaggccatcctggagatcctccgcgacgtcgacaccgacaaggacggccgcatcagctaccaggagttcgagctcatgatgaagtccggcgccgactggaggaacgcctccaggcacttctccagggccaacttcagcaccctcagcaggaggctctgcaaggatactcttactccctga</cdnaseq>|
AA = <aaseq>MGGCYSAYASSRKLRGRISKISLVIPDPVPDAEAASPRKDGVDG DGDDVRGGGGGCDDGGDVVAIATTTADEFARRYVLGKELGRGEFGVTRRCSDAATGEA LACKTIRKHRRLAPPRVTAAKAAAAHGEDVKREVAIMRRMSSASSSRGGGAASSAAVV RLREACEDAADGSVHLVMELCEGGELFDRIVARGHYSERAAANIFRTIVDVVQLCHSN GVIHRDLKPENFLFANKSEDSPLKVIDFGLSVFFKPGDRFTEVVGSAYYMAPEVLRRS YGPEVDVWSAGVILYILLCGVPPFWGDNDEKIAQAILRGAIDFNREPLPRVSANAKDL VRRMLDPNPSTRLTAKQVLEHPWLKNADTAPNVSLGDAVRARLQQFSAMNKFKKKALG VVARNLPGEEVDKYVQMFHHMDKDKNGHLSLDELLEGLHINGQPVPEPEIRMLLEAAD TDGNGTLDCDEFVTVSVHLKKMSNDEYLAAAFNYFDKDGSGFIELDELREEVGPNEQA ILEILRDVDTDKDGRISYQEFELMMKSGADWRNASRHFSRANFSTLSRRLCKDTLTP</aaseq>|
DNA = <dnaseqindica>3685..4038#2252..2419#2051..2166#1788..1940#1102..1243#882..1007#123..761#gcgagccgcgcgagcgcgacacacacagaggaggaggccgcgcgcgcgacgcgagctcgccctctgcgtgcgccgccgcgaggtcgccgccgccgccgccgccgtcgatcggcgcccgatcgatggggggctgctactccgcctacgcctcctcgcgcaagctgcgcggccgcatcagcaagatctccctcgtcatccccgacccggtccccgacgccgaggccgcctcgccgcgcaaggacggcgtcgatggcgacggcgacgacgtgaggggtggtggtggtggctgtgacgatggcggtgacgtcgtcgccatcgcgacgacgacggcggacgagttcgcgcggcggtacgtgctggggaaggagctggggcgcggggagttcggggtgacgcggcggtgcagcgacgcggcgaccggggaggcgctggcgtgcaagacgatccggaagcacaggcgcctggcgccgccgcgggtgaccgcggcgaaggcggcggccgcgcacggggaggacgtgaagagggaggtggccatcatgcggcgcatgtcgtcggcgtcgtcgtcgcgcgggggcggcgccgcgtcgtccgccgccgtggtgcggctccgcgaggcatgcgaggacgccgccgacggctccgtccacctcgtcatggagctctgcgagggcggcgagctgttcgaccgcatcgtggcgcgcggacactactccgagcgcgccgccgccaacatcttccgcaccatcgtcgacgtcgtccaggtaataatcaagaacgaacactacacatcatcttcttcttctcccattgatgcatcaaatcaaacgagtaatcactaattaatcaccaacaatctgtgatcgatcggtcgatggatgcagctgtgccactcgaacggggtgatacaccgcgatctgaagccggagaacttcctgttcgcgaacaaatcggaggactcgccgctcaaggtcatcgacttcggcctctcggtgttcttcaagccaggcacgtcgatcttcagcaaaatttccacctctcatcgtccatgatttctgtcaaatcctccatggtttctgaaaccaatcaaatgttgatgcaggcgaccggttcacggaggtggtggggagcgcgtactacatggcgccggaggtattgcggcggagctacgggccggaggtggacgtgtggagcgccggcgtcatcctctacatcctcctctgcggcgtccctccattctggggaggtatatactcaccttaattacctttttttttaatatacaatgtcattgatttttaaagatatgtttgataatttttttgaaaaaaagattatgtgattaccgcttattttattgtgagtttattgttaattattctataagtatgacttaaacttttttttatagtttgcaaaagttttgaataatacgaatagtcaaatatttataaaaaaaataacgggatcatatcttaacttccttttttactatatatatgatactatttaactttttagtcatgttcaatcattttaccttataaaaatattaaatatttttcgtttgatttatcactaagaaactttaaacattatttatgttttaaagatttacatattttttttaataaaacgaattgtcaaatattaaaaaaaaagttaacggtatcatttattaaaaaaatacattaccaattcaccatgatgatgcaaatcatctcccctgtcaattcttgtcatgaaaaaaaactataactgtaatcttgtctgaacttgcaaatgtgcagacaacgacgagaagatcgcgcaggcgatcctccgcggcgccatcgacttcaacagggagccattgccgagggtctccgccaacgccaaggacctcgtcaggaggatgcttgatcctaacccatccacccgcctgacggccaaacaagttcttggtaagtaaacaacttaatcaaaccttctcaatgattcagatatacacatgattactggaaatcaaacatcattttgtttgtttcgtcgattggttttgaaacaaaaacagagcatccatggctgaagaacgcggacacggcgccgaacgtgtcgctgggcgacgccgtgcgggcgaggctgcagcagttctccgccatgaacaagttcaagaagaaggctctcggagtaagtcgtcgagttgtctcattgcttctgtgttgcgatgatcttgatgggtcgccggagctaacaacggcggtgtccggtgaaggtggtggcgcggaacctgccgggggaggaggtggacaagtacgtgcagatgttccaccacatggacaaggacaagaacgggcacctgtcgctcgacgaactcttggaaggcctccacatcaacggccagcccgtccccgagcccgagatcaggatgctactcgaagccgtaagctttctgctcatctcctcgatctcgatctcagaatcattttctttattaagataatggaagatttttatcgagctcattcaattacatggagaagatctcaaaaatcatttttcttgagtcttgatctcagaatcattttcttttaagataatggaagatttttatcgagctcattcaattacaccgaggagatctcaaaatcattatttttctgaagattttgttgagatcatccaattatatcgagaagatattactgtaaaccgttgaattgtgatggatgatcatactctcattttctcgatctcaaaatcgttttttaaaaaagataataaaatattttatcgagctcatccaattacatcgtgaagatataactgtaccgttgaattggggtggtcagaccctcgtattctcactctcaaaatcgcttttcaaagataatgcaagatttttatcgattgaacttattagctaatttattgattacttgtcgttttagacaagtaaacggtcttaaataaacaattatagccaccattttctattacaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagtaaatttgtttggtgctccatggtgcccgggcaccattgttgaaattgagtatatacctaattcaaatgagtatgaaactttttcaattacttagatattaacattagctactttactaactagttcaaagcaagtttgaactgaatttgaacttgtttttgttagattttgattctaggtatatagcatccatacatataattagttaggtatgtaatcatggattgtgaaataaagttaaatttgagttgttttgttgataggtataggtatgaatcgagttattataactaggtatatactcacaatttgaaaattttgaaaaatttgagtgattttgtgtatttgatatcatggtgccccatatgagtgtcctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattagaaaaaatattttattgtagtatttttaagactaatttctacatatggtctctacatttctacgatttaagaaagtttgaccaaattattatccaaaacaataaatatcatcaactcggaggtattacatcgaggatatagtaagaagatgagatgatgaatttgcaggcggacacggacgggaacgggacgctggactgcgacgagttcgtgacggtgtcggtgcacctgaagaagatgagcaacgacgagtacctggcggcggcgttcaactacttcgacaaggacggcagcgggttcatcgagctggacgagctgcgggaggaggtgggcccaaacgagcaggccatcctggagatcctccgcgacgtcgacaccgacaaggacggccgcatcagctaccaggagttcgagctcatgatgaagtccggcgccgactggaggaacgcctccaggcacttctccagggccaacttcagcaccctcagcaggaggctctgcaaggatactcttactccctgatgatcgatgatgcccaacaatctcatcaactttgtttcatcaaggcttataaactgcacatctttcaccttcaccagacagggataactagagagagatacaagaccaacttagagaaatgtattggagtggcaacacgatgcgatgctgcgcttggattgtgaaatgagaaatggaactgaaatggggatcgtaccggttttgct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001068918.1 RefSeq:Os08g0540400]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 8]]
[[Category:Chromosome 8]]

← Older revision		Revision as of 15:38, 28 January 2015
Line 1:		Line 1:
−	''OsCPK21'', is a ~~mumber~~ of CDPKs (calcium-dependent protein kinases), which play important roles in regulating downstream components in calcium signaling pathways<ref name="ref1"/>.	+	''OsCPK21'', is a member of CDPKs (calcium-dependent protein kinases), which play important roles in regulating downstream components in calcium signaling pathways<ref name="ref1"/>.

	==Annotated Information==		==Annotated Information==

@@ Line 34: / Line 34: @@
 *The amplitude of difierential expression for these genes was not as significant as reported earlier, possibly due to use of difierent rice variety and/or experimental conditions. Most of the previously identiWed stress responsive CDPK genes cluster together in
 subclades Ia and Ib<ref name="ref4"/>(Fig. 3).
-*Each calcium-dependent protein kinase (CDPK) consists of a variable N-terminal domain, a protein kinase domain, an autoinhibitory region and a calmodulin-like domain with EFhand Ca<sup>2+</sup>-binding sites. CDPKs are directly activated by the binding of Ca<sup>2+</sup> to the calmodulin-like domain, and the activated CDPKs regulate downstream targets. CDPKs have been identified throughout the plant kingdom， and in some protozoans, but not in animals. CDPKs constitute a large multigene family in various plant species; CDPK genes have been identified in ''Arabidopsis thaliana'', and CDPK genes have been found in ''Oryza sativa'' (rice)18 (Fig. 4). The expression and activities of CDPKs are upregulated by a variety of stimuli, such as hormones, abiotic stresses and biotic stresses. Red letters indicate CDPKs involved in abiotic stress signaling<ref name="ref5"/>.
+*Each calcium-dependent protein kinase (CDPK) consists of a variable N-terminal domain, a protein kinase domain, an autoinhibitory region and a calmodulin-like domain with EFhand Ca<sup>2+</sup>-binding sites. CDPKs are directly activated by the binding of Ca<sup>2+</sup> to the calmodulin-like domain, and the activated CDPKs regulate downstream targets. CDPKs have been identified throughout the plant kingdom， and in some protozoans, but not in animals. CDPKs constitute a large multigene family in various plant species; CDPK genes have been identified in ''Arabidopsis thaliana'', and CDPK genes have been found in ''Oryza sativa'' (rice) (Fig. 4). The expression and activities of CDPKs are upregulated by a variety of stimuli, such as hormones, abiotic stresses and biotic stresses. Red letters indicate CDPKs involved in abiotic stress signaling<ref name="ref5"/>.
 *Phylogenetic relationships among rice CCaMK, and rice and ''Arabidopsis'' CDPKs, CRKs and PEPRKs. A phylogenetic tree was created using the ClustalW program, based on the predicted amino acid sequences of the rice and ''Arabidopsis'' kinases, which are indicated by red and blue type, respectively.As shown in Fig. 5, the phylogenetic tree of these kinase sequences forms seven subgroups: CDPKs I–IV, CRKs, CCaMK and PEPRKs. Furthermore, the 29 rice CDPKs were divided into four distinct classes<ref name="ref3"/>.

@@ Line 6: / Line 6: @@
 Calcium plays an important role as a messenger in various signal transduction pathways. Calcium-dependent protein kinases (CDPKs) are Ca<sup>2+</sup>-binding sensory kinases that regulate the downstream components of calcium signaling. CDPKs have been identified throughout the plant kingdom and in some protozoans but not in animals<ref name="ref1"/>.<br>
 Overexpression of ''OsCPK21'' in rice confers increased sensitivity to exogenous ABA, enhanced tolerance to salinity stress and elevated expression of ABA- and stress-inducible genes, suggesting a role for ''OsCPK21'' as a positive factor in the ABA and salt stress
-signaling pathways. These findings could contribute to the elucidation of the CDPK-mediated ABA and salt stress signaling and to generate crops with improved tolerance to salt stress<ref name="ref1"/>.
+signaling pathways,which could contribute to the elucidation of the CDPK-mediated ABA and salt stress signaling and to generate crops with improved tolerance to salt stress<ref name="ref1"/>.
 '''GO assignment(s):''' [http://amigo.geneontology.org/amigo/term/GO:0004672 GO:0004672], [http://amigo.geneontology.org/amigo/term/GO:0004674 GO:0004674], [http://amigo.geneontology.org/amigo/term/GO:0006468 GO:0006468], [http://amigo.geneontology.org/amigo/term/GO:0005524 GO:0005524], [http://amigo.geneontology.org/amigo/term/GO:0005509 GO:0005509]

@@ Line 3: / Line 3: @@
 ==Annotated Information==
 ===Function===
-*''OsCPK21'' is involved in the positive regulation of the signaling pathways that are involved in the response to ABA and salt stress.
+''OsCPK21'' is involved in the positive regulation of the signaling pathways that are involved in the response to ABA and salt stress.
-Calcium plays an important role as a messenger in various signal transduction pathways. Calcium-dependent protein kinases (CDPKs) are Ca<sup>2+</sup>-binding sensory kinases that regulate the downstream components of calcium signaling. CDPKs have been identified throughout the plant kingdom and in some protozoans but not in animals<ref name="ref1"/>.
+Calcium plays an important role as a messenger in various signal transduction pathways. Calcium-dependent protein kinases (CDPKs) are Ca<sup>2+</sup>-binding sensory kinases that regulate the downstream components of calcium signaling. CDPKs have been identified throughout the plant kingdom and in some protozoans but not in animals<ref name="ref1"/>.<br>
-*Overexpression of ''OsCPK21'' in rice confers increased sensitivity to exogenous ABA, enhanced tolerance to salinity stress and elevated expression of ABA- and stress-inducible genes, suggesting a role for ''OsCPK21'' as a positive factor in the ABA and salt stress
+Overexpression of ''OsCPK21'' in rice confers increased sensitivity to exogenous ABA, enhanced tolerance to salinity stress and elevated expression of ABA- and stress-inducible genes, suggesting a role for ''OsCPK21'' as a positive factor in the ABA and salt stress
 signaling pathways. These findings could contribute to the elucidation of the CDPK-mediated ABA and salt stress signaling and to generate crops with improved tolerance to salt stress<ref name="ref1"/>.

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+''OsCPK21'', is a mumber of CDPKs (calcium-dependent protein kinases), which play important roles in regulating downstream components in calcium signaling pathways<ref name="ref1"/>.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+*''OsCPK21'' is involved in the positive regulation of the signaling pathways that are involved in the response to ABA and salt stress.
 ===Expression===
-Please input expression information here.
+[[File: OsCPK21-FOX and OsCPK13-1-FOX.jpg|left|thumb|250px|'''Figure 1.'''''Tolerance of OsCPK21-FOX and OsCPK13-1-FOX plants to salt stress.(from reference <ref name="ref1"/>).'']]
 ===Evolution===
-Please input evolution information here.
+[[File: OsCPK21 Phylogenetic2.jpg|right|thumb|300px|'''Figure 3.Phylogenetic relatedness among the rice, Arabidopsis and functionally characterized CDPKs from other plant species.(from reference <ref name="ref4"/>).'']]
-You can also add sub-section(s) at will.
+The subcellular localization of each CDPK and the phenotypes of overexpression (OX) or knockout or knockdown (KO) lines are described. Red letters, ''Arabidopsis'' CDPKs; green letters, rice CDPKs; P, phosphorylation; ABF, ABA-responsive element binding factor; HSP1, a heat shock protein; OST1, open stomata 1 protein kinase<ref name="ref5"/>(Fig. 6).
 ==Labs working on this gene==
-Please input related labs here.
+*Department of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==

@@ Line 78: / Line 78: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]

← Older revision		Revision as of 20:53, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os08g0540400\|		GeneName = Os08g0540400\|