Os09g0457400 - Revision history

Chenxi Sang at 09:31, 9 November 2016

2016-11-09T09:31:58Z

Chenxi Sang at 09:30, 9 November 2016

2016-11-09T09:30:46Z

Chenxi Sang at 09:28, 9 November 2016

2016-11-09T09:28:41Z

Chenxi Sang at 09:27, 9 November 2016

2016-11-09T09:27:59Z

Chenxi Sang at 09:07, 9 November 2016

2016-11-09T09:07:02Z

192.168.72.52 at 13:26, 14 May 2015

2015-05-14T13:26:06Z

124.16.129.48 at 21:00, 22 July 2012

2012-07-22T21:00:29Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os09g0457400| Description = Alpha-amylase isozyme 3A precursor (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase)| Version = NM_001069902.1 GI:11..."

2012-06-21T07:28:05Z

Created page with "{{JaponicaGene| GeneName = Os09g0457400| Description = Alpha-amylase isozyme 3A precursor (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase)| Version = NM_001069902.1 GI:11..."

New page

{{JaponicaGene|
GeneName = Os09g0457400|
Description = Alpha-amylase isozyme 3A precursor (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase)|
Version = NM_001069902.1 GI:115479546 GeneID:4347262|
Length = 2260 bp|
Definition = Oryza sativa Japonica Group Os09g0457400, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
AP = Chromosome 9:17942704..17944963|
CDS = 17942847..17942945,17943072..17943202,17943612..17944419,17944510..17944794|
GCID = <gbrowseImage1>
name=NC_008402:17942704..17944963
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008402:17942704..17944963
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggggaagcaaatggccgccctgtgtggctttctcctcgtggcgttgctctggctcacgcccgacgtcgcgcacgcgcagacgcagatcctcttccagggttttaactgggactcgtggaagaagcagggtggttggtacaacatgctcaaggaccaggtgggcgacatcgccagcgccggcgtcacgcacgtctggctcccacctcccacgcactccgtctcgcctcaaggctacatgccgggacggctctacgacctgaacgcgtccaagtacggcaccaaggcggagctcaagtcgctcatcgccgccttccacgccaagggcatcaagtgcgtcgcggacatcgtcgtcaaccaccgctgcgccgacgacaaggacggccgcggcgtctactgcatcttcaagggcggcggcccgcgcggctgcctggactggggcccctccatgatctgctgcgacgacacgcagtactccgacggcacgggccaccgcgacaccggcgccgacttcgccgcggcgcccgatatcgaccacctcaacccgctcgtccagcgggagctctccgactggctcaggtggctcaggagggatgtcggcttcgacggctggcgcctcgacttcgccaagggctactcggcggccgtcgccaggacgtatgtccagaacgccaggccgagcttcgtcgtggcggagatatggaactccctgagctacgacggcgacgggaagccggcggccaaccaggacggccagcggcaggagctcgtgaactgggtgaagcaggttggcggcccggcgacggcgttcgacttcacgaccaagggcatcctgcagtcggcggtgcagggcgagctgtggcggatgcgggacaaggacggcaaggcgccgggcatgataggctggtatcccgagaaggccgtcaccttcgtcgacaaccacgacaccggctcgacgcagcggatgtggccattcccgtctgacaaggtcattctgggctacgcctacatcctcacccacccaggagtaccatgcatcttctacgaccacgtgttcgactggaacctcaagcaagagatcaacgcgctggcggcgacgaggaagcgcaacgggataaacgccgggagcaagctgcgcgtcctggcggcggagagcgacatgtacgtggcgatggtcgacgagagggtcatcaccaagatcgggccgagaatagacgtgggcaacataatcccgtcggacttccacatcgtggctcatggcaatgactactgcgtctgggagaagagcggccttagagtcccagaaccagaaggtcggcgctag</cdnaseq>|
AA = <aaseq>MGKQMAALCGFLLVALLWLTPDVAHAQTQILFQGFNWDSWKKQG GWYNMLKDQVGDIASAGVTHVWLPPPTHSVSPQGYMPGRLYDLNASKYGTKAELKSLI AAFHAKGIKCVADIVVNHRCADDKDGRGVYCIFKGGGPRGCLDWGPSMICCDDTQYSD GTGHRDTGADFAAAPDIDHLNPLVQRELSDWLRWLRRDVGFDGWRLDFAKGYSAAVAR TYVQNARPSFVVAEIWNSLSYDGDGKPAANQDGQRQELVNWVKQVGGPATAFDFTTKG ILQSAVQGELWRMRDKDGKAPGMIGWYPEKAVTFVDNHDTGSTQRMWPFPSDKVILGY AYILTHPGVPCIFYDHVFDWNLKQEINALAATRKRNGINAGSKLRVLAAESDMYVAMV DERVITKIGPRIDVGNIIPSDFHIVAHGNDYCVWEKSGLRVPEPEGRR</aaseq>|
DNA = <dnaseqindica>144..242#369..499#909..1716#1807..2091#acgcagcaagagccgatcgatcattgtccaagtctccaagcgatcagctagctgacttgacgacgctgcgagcagcggcagcaagagagcagcagcacaaagggttcccctttcacaagtgtccggccggctgcacgtaggccatggggaagcaaatggccgccctgtgtggctttctcctcgtggcgttgctctggctcacgcccgacgtcgcgcacgcgcagacgcagatcctcttccaggtgctttattcatttcacccataaacgggcaagggggttcacctgtgtaaaattatcgacagcaagtcagaacggctaatataattcacgtacaaccgaatacgtgtctgtaacatttttgtgcagggttttaactgggactcgtggaagaagcagggtggttggtacaacatgctcaaggaccaggtgggcgacatcgccagcgccggcgtcacgcacgtctggctcccacctcccacgcactccgtctcgcctcaaggccagcaagccatgcatctccttcatctcgttacgcttctctttgtagcatgtccgtttctaaatatttgacaccattgactttttagcatatgtttaaccgtttactttatttaaatttttttgtgaaatatgtaacactatatgtatacatataagtatatttaacaataaattaaatgataggaaaagaattaataattatttaaattttttaaataagatgaacggtcgaacatatttaaaaatataacggtatgaaatatttagaaagggagggagtatattacgtgacgtaaagtgtgttacggccagtgtcttactgcaattatcagctgatctagctcatcaggcaattgacatgtatgcatgcatgtgtttaaatcgatttttcccgtgcatgcacgcaggctacatgccgggacggctctacgacctgaacgcgtccaagtacggcaccaaggcggagctcaagtcgctcatcgccgccttccacgccaagggcatcaagtgcgtcgcggacatcgtcgtcaaccaccgctgcgccgacgacaaggacggccgcggcgtctactgcatcttcaagggcggcggcccgcgcggctgcctggactggggcccctccatgatctgctgcgacgacacgcagtactccgacggcacgggccaccgcgacaccggcgccgacttcgccgcggcgcccgatatcgaccacctcaacccgctcgtccagcgggagctctccgactggctcaggtggctcaggagggatgtcggcttcgacggctggcgcctcgacttcgccaagggctactcggcggccgtcgccaggacgtatgtccagaacgccaggccgagcttcgtcgtggcggagatatggaactccctgagctacgacggcgacgggaagccggcggccaaccaggacggccagcggcaggagctcgtgaactgggtgaagcaggttggcggcccggcgacggcgttcgacttcacgaccaagggcatcctgcagtcggcggtgcagggcgagctgtggcggatgcgggacaaggacggcaaggcgccgggcatgataggctggtatcccgagaaggccgtcaccttcgtcgacaaccacgacaccggctcgacgcagcggatgtggccattcccgtctgacaaggtcattctgggctacgcctacatcctcacccacccaggagtaccatgcatcgtacgcaattaacttctcaaagcttgttataacatccatggatcgatgcttcatcattcataggtgacaattttgttttgtgttgtttagttctacgaccacgtgttcgactggaacctcaagcaagagatcaacgcgctggcggcgacgaggaagcgcaacgggataaacgccgggagcaagctgcgcgtcctggcggcggagagcgacatgtacgtggcgatggtcgacgagagggtcatcaccaagatcgggccgagaatagacgtgggcaacataatcccgtcggacttccacatcgtggctcatggcaatgactactgcgtctgggagaagagcggccttagagtcccagaaccagaaggtcggcgctagaaacggctcgcaagctagctacacagttcttaataacttggtcgcaaaaaaaaagttcttaataatttgtacgagaaatgttcgtttctgtttgcatatatagcttatgaaatcttaccaatatatactgctctgttttctatagttcatcccggaaatttgaacttgc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069902.1 RefSeq:Os09g0457400]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

@@ Line 2: / Line 2: @@
 ==Annotated Information==
-[[File:Os02g0765600.png|right|thumb|527px|'''Figure 1.''' ''a-Amylase activity and expression levels of eight a-amylase genes during grain filling.<ref name="ref1" />.'']]
+[[File:Os02g0765600.png|right|thumb|427px|'''Figure 1.''' ''a-Amylase activity and expression levels of eight a-amylase genes during grain filling.<ref name="ref1" />.'']]
 ===Gene Symbol===
 *'''''Os09g0457400''''' '''''<=>''''' '''''OsAmy3A''''','''''Amy3A'''''

@@ Line 2: / Line 2: @@
 ==Annotated Information==
 ===Gene Symbol===
 *'''''Os09g0457400''''' '''''<=>''''' '''''OsAmy3A''''','''''Amy3A'''''
@@ Line 13: / Line 14: @@
 * '''''Amy1A''''' and '''''Amy1C''''' showed a similar pattern of expression in the high temperature plot, gradually increasing from 8 DAF and peaking at 15–20 DAF. '''''Amy3A''''' and '''''Amy3D''''' expression peaked around 15 DAF, while '''''Amy3E''''' showed high levels at 8–30 DAF in the high temperature plot. In contrast, the expression of '''''Amy2A''''', '''''Amy3B''''' and '''''Amy3C''''' was not induced by high temperature (Figure 1b).
 * The intensity of the expression of all a-amylase genes in the course of grain filling clearly indicates that the newly characterized '''''Amy3A''''' gene was expressed at a considerable level under high temperature from 15 DA.
 You can also add sub-section(s) at will.

← Older revision		Revision as of 09:28, 9 November 2016
Line 15:		Line 15:


−	[[File:Os02g0765600.png\|center\|thumb\|~~727px~~\|'''Figure 1.''' ''a-Amylase activity and expression levels of eight a-amylase genes during grain filling.<ref name="ref1" />.'']]	+	[[File:Os02g0765600.png\|center\|thumb\|527px\|'''Figure 1.''' ''a-Amylase activity and expression levels of eight a-amylase genes during grain filling.<ref name="ref1" />.'']]

	You can also add sub-section(s) at will.		You can also add sub-section(s) at will.

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice '''''Os02g0765600''''' was reported as '''''Amy3A''''' in 2012 <ref name="ref1" /> by researchers from Japan.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+* '''''Amy3A''''' is a member of α-Amylase (EC3.2.1.1) gene family, which encodes a starch-hydrolyzing enzyme.
 ===Expression===
-Please input expression information here.
+* A series of quantitative real-time RT-PCR analyses using gene-specific primer sets for respective a-amylase genes revealed that the expression of '''''Amy1C''''' and '''''Amy3A''''' as well as '''''Amy1A''''', '''''Amy3D''''' and '''''Amy3E''''' was up-regulated under high temperature (33 °C/28 °C) in the middle of the ripening stage at around 15 days after flowering (DAF; Figure 1b).
-===Evolution===
-Please input evolution information here.
+[[File:Os02g0765600.png|center|thumb|727px|'''Figure 1.''' ''a-Amylase activity and expression levels of eight a-amylase genes during grain filling.<ref name="ref1" />.'']]
 You can also add sub-section(s) at will.

@@ Line 14: / Line 14: @@
 ==Labs working on this gene==
-Please input related labs here.
+* National Agricultural Research Center, Joetsu, Japan
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==
 		 [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 9]]

← Older revision		Revision as of 13:26, 14 May 2015
Line 20:		Line 20:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 9]]
−	~~GeneName = Os09g0457400\|~~
−	~~Description = Alpha-amylase isozyme 3A precursor (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase)\|~~
−	~~Version = NM_001069902.1 GI:115479546 GeneID:4347262\|~~
−	~~Length = 2260 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os09g0457400, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 9\|Chromosome 9]]\|~~
−	~~AP = Chromosome 9:17942704..17944963\|~~
−	~~CDS = 17942847..17942945,17943072..17943202,17943612..17944419,17944510..17944794\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008402:17942704..17944963~~
−	~~source=RiceChromosome09~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008402:17942704..17944963~~
−	~~source=RiceChromosome09~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atggggaagcaaatggccgccctgtgtggctttctcctcgtggcgttgctctggctcacgcccgacgtcgcgcacgcgcagacgcagatcctcttccagggttttaactgggactcgtggaagaagcagggtggttggtacaacatgctcaaggaccaggtgggcgacatcgccagcgccggcgtcacgcacgtctggctcccacctcccacgcactccgtctcgcctcaaggctacatgccgggacggctctacgacctgaacgcgtccaagtacggcaccaaggcggagctcaagtcgctcatcgccgccttccacgccaagggcatcaagtgcgtcgcggacatcgtcgtcaaccaccgctgcgccgacgacaaggacggccgcggcgtctactgcatcttcaagggcggcggcccgcgcggctgcctggactggggcccctccatgatctgctgcgacgacacgcagtactccgacggcacgggccaccgcgacaccggcgccgacttcgccgcggcgcccgatatcgaccacctcaacccgctcgtccagcgggagctctccgactggctcaggtggctcaggagggatgtcggcttcgacggctggcgcctcgacttcgccaagggctactcggcggccgtcgccaggacgtatgtccagaacgccaggccgagcttcgtcgtggcggagatatggaactccctgagctacgacggcgacgggaagccggcggccaaccaggacggccagcggcaggagctcgtgaactgggtgaagcaggttggcggcccggcgacggcgttcgacttcacgaccaagggcatcctgcagtcggcggtgcagggcgagctgtggcggatgcgggacaaggacggcaaggcgccgggcatgataggctggtatcccgagaaggccgtcaccttcgtcgacaaccacgacaccggctcgacgcagcggatgtggccattcccgtctgacaaggtcattctgggctacgcctacatcctcacccacccaggagtaccatgcatcttctacgaccacgtgttcgactggaacctcaagcaagagatcaacgcgctggcggcgacgaggaagcgcaacgggataaacgccgggagcaagctgcgcgtcctggcggcggagagcgacatgtacgtggcgatggtcgacgagagggtcatcaccaagatcgggccgagaatagacgtgggcaacataatcccgtcggacttccacatcgtggctcatggcaatgactactgcgtctgggagaagagcggccttagagtcccagaaccagaaggtcggcgctag</cdnaseq>\|
−	AA = <aaseq>MGKQMAALCGFLLVALLWLTPDVAHAQTQILFQGFNWDSWKKQG GWYNMLKDQVGDIASAGVTHVWLPPPTHSVSPQGYMPGRLYDLNASKYGTKAELKSLI AAFHAKGIKCVADIVVNHRCADDKDGRGVYCIFKGGGPRGCLDWGPSMICCDDTQYSD GTGHRDTGADFAAAPDIDHLNPLVQRELSDWLRWLRRDVGFDGWRLDFAKGYSAAVAR TYVQNARPSFVVAEIWNSLSYDGDGKPAANQDGQRQELVNWVKQVGGPATAFDFTTKG ILQSAVQGELWRMRDKDGKAPGMIGWYPEKAVTFVDNHDTGSTQRMWPFPSDKVILGY AYILTHPGVPCIFYDHVFDWNLKQEINALAATRKRNGINAGSKLRVLAAESDMYVAMV DERVITKIGPRIDVGNIIPSDFHIVAHGNDYCVWEKSGLRVPEPEGRR</aaseq>\|
−	DNA = <dnaseqindica>144..242#369..499#909..1716#1807..2091#acgcagcaagagccgatcgatcattgtccaagtctccaagcgatcagctagctgacttgacgacgctgcgagcagcggcagcaagagagcagcagcacaaagggttcccctttcacaagtgtccggccggctgcacgtaggccatggggaagcaaatggccgccctgtgtggctttctcctcgtggcgttgctctggctcacgcccgacgtcgcgcacgcgcagacgcagatcctcttccaggtgctttattcatttcacccataaacgggcaagggggttcacctgtgtaaaattatcgacagcaagtcagaacggctaatataattcacgtacaaccgaatacgtgtctgtaacatttttgtgcagggttttaactgggactcgtggaagaagcagggtggttggtacaacatgctcaaggaccaggtgggcgacatcgccagcgccggcgtcacgcacgtctggctcccacctcccacgcactccgtctcgcctcaaggccagcaagccatgcatctccttcatctcgttacgcttctctttgtagcatgtccgtttctaaatatttgacaccattgactttttagcatatgtttaaccgtttactttatttaaatttttttgtgaaatatgtaacactatatgtatacatataagtatatttaacaataaattaaatgataggaaaagaattaataattatttaaattttttaaataagatgaacggtcgaacatatttaaaaatataacggtatgaaatatttagaaagggagggagtatattacgtgacgtaaagtgtgttacggccagtgtcttactgcaattatcagctgatctagctcatcaggcaattgacatgtatgcatgcatgtgtttaaatcgatttttcccgtgcatgcacgcaggctacatgccgggacggctctacgacctgaacgcgtccaagtacggcaccaaggcggagctcaagtcgctcatcgccgccttccacgccaagggcatcaagtgcgtcgcggacatcgtcgtcaaccaccgctgcgccgacgacaaggacggccgcggcgtctactgcatcttcaagggcggcggcccgcgcggctgcctggactggggcccctccatgatctgctgcgacgacacgcagtactccgacggcacgggccaccgcgacaccggcgccgacttcgccgcggcgcccgatatcgaccacctcaacccgctcgtccagcgggagctctccgactggctcaggtggctcaggagggatgtcggcttcgacggctggcgcctcgacttcgccaagggctactcggcggccgtcgccaggacgtatgtccagaacgccaggccgagcttcgtcgtggcggagatatggaactccctgagctacgacggcgacgggaagccggcggccaaccaggacggccagcggcaggagctcgtgaactgggtgaagcaggttggcggcccggcgacggcgttcgacttcacgaccaagggcatcctgcagtcggcggtgcagggcgagctgtggcggatgcgggacaaggacggcaaggcgccgggcatgataggctggtatcccgagaaggccgtcaccttcgtcgacaaccacgacaccggctcgacgcagcggatgtggccattcccgtctgacaaggtcattctgggctacgcctacatcctcacccacccaggagtaccatgcatcgtacgcaattaacttctcaaagcttgttataacatccatggatcgatgcttcatcattcataggtgacaattttgttttgtgttgtttagttctacgaccacgtgttcgactggaacctcaagcaagagatcaacgcgctggcggcgacgaggaagcgcaacgggataaacgccgggagcaagctgcgcgtcctggcggcggagagcgacatgtacgtggcgatggtcgacgagagggtcatcaccaagatcgggccgagaatagacgtgggcaacataatcccgtcggacttccacatcgtggctcatggcaatgactactgcgtctgggagaagagcggccttagagtcccagaaccagaaggtcggcgctagaaacggctcgcaagctagctacacagttcttaataacttggtcgcaaaaaaaaagttcttaataatttgtacgagaaatgttcgtttctgtttgcatatatagcttatgaaatcttaccaatatatactgctctgttttctatagttcatcccggaaatttgaacttgc</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069902.1 RefSeq:Os09g0457400]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 9]]~~
−	~~[[Category:~~Chromosome 9]]

← Older revision		Revision as of 21:00, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os09g0457400\|		GeneName = Os09g0457400\|