Os09g0532000 - Revision history

Liman at 07:54, 23 November 2016

2016-11-23T07:54:07Z

Liman at 07:44, 23 November 2016

2016-11-23T07:44:55Z

Liman at 13:50, 15 October 2016

2016-10-15T13:50:01Z

192.168.72.52 at 13:30, 14 May 2015

2015-05-14T13:30:45Z

124.16.129.48 at 21:02, 22 July 2012

2012-07-22T21:02:56Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os09g0532000| Description = Conserved hypothetical protein| Version = NM_001070293.2 GI:297609845 GeneID:4347672| Length = 2356 bp| Definition ..."

2012-06-21T07:33:22Z

Created page with "{{JaponicaGene| GeneName = Os09g0532000| Description = Conserved hypothetical protein| Version = NM_001070293.2 GI:297609845 GeneID:4347672| Length = 2356 bp| Definition ..."

New page

{{JaponicaGene|
GeneName = Os09g0532000|
Description = Conserved hypothetical protein|
Version = NM_001070293.2 GI:297609845 GeneID:4347672|
Length = 2356 bp|
Definition = Oryza sativa Japonica Group Os09g0532000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
AP = Chromosome 9:21700364..21702719|
CDS = 21700789..21701124,21701876..21702223,21702329..21702469|
GCID = <gbrowseImage1>
name=NC_008402:21700364..21702719
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008402:21700364..21702719
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggctgctgctacttcgaccatgtccctgcttcctcccatcacccagcagcagcggtggcacgccgccgactccctcgtcgtcctcgcctcccgctgccacaactctcgccgccgccgccgctgccgctacgtcgtgccgagggcgaggctgttcgggccggcgatcttcgaggcgtcgaagctgaaggtgctgttcctgggggtggacgaggagaagcaccagcacccggggaagctgccgcggacgtacacgctgacgcacagcgacgtgacggcgaggctgacgctggcggtgtcgcacaccatcaaccgggcgcagctgcaggggtggtacaacaagctgcagcgggacgaggtggtggcggagtggaagaaggtgcagggccacatgtcgctgcacgtccactgccacatctccggcggccacgtcctcctcgacctcatcgccggcctccgctactacatcttccgcaaggagctccccgtggttctgaaggcgttcgtccacggcgacggcaacctgttcagccggcacccggagctggaggaggccacggtgtgggtctacttccactccaacctcccacgcttcaaccgcgtcgagtgctggggcccgctccgcgacgccggagcgccgcccgaggaagacgacgccgtcgccgccgcggcggccgaggaggcggcggcggagcagatgcccgcggccggcgagtggccgcggcggtgcccggggcagtgcgactgctgcttcccgccatacagcctcatcccctggccgcaccagcacgacgtcgccgccgccgacggccagccgcagcagtga</cdnaseq>|
AA = <aaseq>MAAATSTMSLLPPITQQQRWHAADSLVVLASRCHNSRRRRRCRY VVPRARLFGPAIFEASKLKVLFLGVDEEKHQHPGKLPRTYTLTHSDVTARLTLAVSHT INRAQLQGWYNKLQRDEVVAEWKKVQGHMSLHVHCHISGGHVLLDLIAGLRYYIFRKE LPVVLKAFVHGDGNLFSRHPELEEATVWVYFHSNLPRFNRVECWGPLRDAGAPPEEDD AVAAAAAEEAAAEQMPAAGEWPRRCPGQCDCCFPPYSLIPWPHQHDVAAADGQPQQ</aaseq>|
DNA = <dnaseqindica>1596..1931#497..844#251..391#gagaagccaatccgcgaagctaccaaaccgagccaaaattttgatcgatcgatcggccggccggtgtctttgttgaggcgtgcaaggctcgtgctttcgccgagagggattaattagccgcgcctccagcatctccggcctccatagagatcccagcttataattaaagctgtcaagagtcgttttggttgttaggcttaaagttaactactgctggctagctaggactaagagatccgagggagcagacatggctgctgctacttcgaccatgtccctgcttcctcccatcacccagcagcagcggtggcacgccgccgactccctcgtcgtcctcgcctcccgctgccacaactctcgccgccgccgccgctgccgctacgtcgtgccggtacgtacatgcaccatcctctttcttctccggtgaatcaatggttggagaagaagaatccgaatgaaatgtaaattaaatatgtatgtggatgtggtggtgcagagggcgaggctgttcgggccggcgatcttcgaggcgtcgaagctgaaggtgctgttcctgggggtggacgaggagaagcaccagcacccggggaagctgccgcggacgtacacgctgacgcacagcgacgtgacggcgaggctgacgctggcggtgtcgcacaccatcaaccgggcgcagctgcaggggtggtacaacaagctgcagcgggacgaggtggtggcggagtggaagaaggtgcagggccacatgtcgctgcacgtccactgccacatctccggcggccacgtcctcctcgacctcatcgccggcctccgctactacatcttccgcaaggagctccccgtggtacgtacgtggcccctttcctcgtcgctcgctttactgatgctctcttcttctttcagacttggagaccacaagcttttttccttttttttttcccctttgctcttttcatttttgcaatcaagacgtactctgtgtcaatgtccctgagataattgatgggatccaataattcttgtctgctaaagcaggcaaatcccttgactttctagatctgattttagacactgttattagtggcaccaaaaactgatctccaacaagtaggggaaacaattttaatctctcagattggcatccatccatctgttacatatcaattaaatcgttataaaaaaaattaaaatatttgataatatagattcacatataatatgtaagtttaaattcgacttttataagttgtaataaatataaccaatcaaactctaattagtttactatgttcactgttaaatttgttacttttattataacttgtataagtcaaatgtcaaatttaaacttatatgtttgtggtgcaatatattatatgttaatctattttatcaactttttaagaatattatatactagtgaaattaatcaactgtgttcaaagttgcatgcccacttgacacgtgccaaacacgacttggaagttcagatgtgagaataaaaatcgaaatttttgaacagcttcctgaaattgattaattcgagcctaatcgcttgctttggttgaccgttgactcggcgcgtgttcggccaggttctgaaggcgttcgtccacggcgacggcaacctgttcagccggcacccggagctggaggaggccacggtgtgggtctacttccactccaacctcccacgcttcaaccgcgtcgagtgctggggcccgctccgcgacgccggagcgccgcccgaggaagacgacgccgtcgccgccgcggcggccgaggaggcggcggcggagcagatgcccgcggccggcgagtggccgcggcggtgcccggggcagtgcgactgctgcttcccgccatacagcctcatcccctggccgcaccagcacgacgtcgccgccgccgacggccagccgcagcagtgacggcggcgccgccgcgattcgtagattagcgaattcgtttggttgccatggtacacctacacgcatgcaatgtcgccaaatgacgctgcgtgctttgcgttaaattctttaattattcgtagtggcatttagctcagctcagctcagctctgcaattagcacatatttgattagctttagggaatgagtgtggtgagcttgtaaatagaagaacactagtagatggcaagcaaatggaaacgatcgatgatgcagtagatgttactgcaaaaatggcaattattagatgaagtcgacacacaaagacagatctcgtttcatttgtacattctacagtctacgtcgatgaggacatgactggatttgtatagcaaattagtactagcagctaataagtgtggattaattatgaaacacgattgttt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001070293.2 RefSeq:Os09g0532000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

@@ Line 6: / Line 6: @@
 ===Function===
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+* '''''Sgr''''' is a senescence-associated gene encoding a novel chloroplast protein.
+* In senescing leaves, '''''Sgr''''' regulates Chl degradation by inducing LHCPII disassembly through direct interaction, leading to the degradation of Chls and Chl-free LHCPII by catabolic enzymes and proteases, respectively.
 ===Mutation===
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+* Transgenic rice overexpressing Sgr produces yellowish-brown leaves, and Arabidopsis thaliana pheophorbide a oxygenase–impaired mutants exhibiting a stay-green phenotype during dark-induced senescence have reduced expression of Sgr homologs, indicating that Sgr regulates Chl degradation at the transcriptional level. The researchers show that the leaf staygreenness of the sgr mutant is associated with a failure in the destabilization of the light-harvesting chlorophyll binding protein (LHCP) complexes of the thylakoid membranes, which is a prerequisite event for the degradation of Chls and LHCPs during senescence. Transient overexpression of Sgr in Nicotiana benthamiana and an in vivo pull-down assay show that Sgr interacts with LHCPII, indicating that the Sgr-LHCPII complexes are formed in the thylakoid membranes.
+[[File:Os09g0532000-1.png|center|thumb|400px|'''Figure 1. Phenotypic Characterization of sgr during Natural and Dark-Induced Senescence.''' '' <ref name="ref1" />.'']]
-===Expression ===
+===Sublocalization===
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+* The researchers introduced Pro35S:Sgr- GFP into protoplasts of Arabidopsis and showed that the green fluorescence by GFP colocalized with the red autofluorescence of Chls, indicating that Sgr is a chloroplast protein
 ===Evolution===

@@ Line 1: / Line 1: @@
-The rice gene  was reported as '''''''''' in 20<ref name="ref1" /> by researchers from China and Japan.
+The rice gene Os09g0532000 was reported as '''''sgr''''' in 2007<ref name="ref1" /> by researchers from Korea.
 ==Annotated Information==
 ===Gene Symbol===
-*''''' <=>
+*'''''Os09g0532000 <=> sgr(t), sgr, OsSGR
 ===Function===
@@ Line 19: / Line 19: @@
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
+* Department of Plant Science and Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul
 ==References==
 <references>
 * <ref name="ref1">
 </ref>

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice gene  was reported as '''''''''' in 20<ref name="ref1" /> by researchers from China and Japan.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
 ===Evolution===
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==
 		 [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 9]]

← Older revision		Revision as of 13:30, 14 May 2015
Line 20:		Line 20:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 9]]
−	~~GeneName = Os09g0532000\|~~
−	~~Description = Conserved hypothetical protein\|~~
−	~~Version = NM_001070293.2 GI:297609845 GeneID:4347672\|~~
−	~~Length = 2356 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os09g0532000, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 9\|Chromosome 9]]\|~~
−	~~AP = Chromosome 9:21700364..21702719\|~~
−	~~CDS = 21700789..21701124,21701876..21702223,21702329..21702469\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008402:21700364..21702719~~
−	~~source=RiceChromosome09~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008402:21700364..21702719~~
−	~~source=RiceChromosome09~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atggctgctgctacttcgaccatgtccctgcttcctcccatcacccagcagcagcggtggcacgccgccgactccctcgtcgtcctcgcctcccgctgccacaactctcgccgccgccgccgctgccgctacgtcgtgccgagggcgaggctgttcgggccggcgatcttcgaggcgtcgaagctgaaggtgctgttcctgggggtggacgaggagaagcaccagcacccggggaagctgccgcggacgtacacgctgacgcacagcgacgtgacggcgaggctgacgctggcggtgtcgcacaccatcaaccgggcgcagctgcaggggtggtacaacaagctgcagcgggacgaggtggtggcggagtggaagaaggtgcagggccacatgtcgctgcacgtccactgccacatctccggcggccacgtcctcctcgacctcatcgccggcctccgctactacatcttccgcaaggagctccccgtggttctgaaggcgttcgtccacggcgacggcaacctgttcagccggcacccggagctggaggaggccacggtgtgggtctacttccactccaacctcccacgcttcaaccgcgtcgagtgctggggcccgctccgcgacgccggagcgccgcccgaggaagacgacgccgtcgccgccgcggcggccgaggaggcggcggcggagcagatgcccgcggccggcgagtggccgcggcggtgcccggggcagtgcgactgctgcttcccgccatacagcctcatcccctggccgcaccagcacgacgtcgccgccgccgacggccagccgcagcagtga</cdnaseq>\|
−	AA = <aaseq>MAAATSTMSLLPPITQQQRWHAADSLVVLASRCHNSRRRRRCRY VVPRARLFGPAIFEASKLKVLFLGVDEEKHQHPGKLPRTYTLTHSDVTARLTLAVSHT INRAQLQGWYNKLQRDEVVAEWKKVQGHMSLHVHCHISGGHVLLDLIAGLRYYIFRKE LPVVLKAFVHGDGNLFSRHPELEEATVWVYFHSNLPRFNRVECWGPLRDAGAPPEEDD AVAAAAAEEAAAEQMPAAGEWPRRCPGQCDCCFPPYSLIPWPHQHDVAAADGQPQQ</aaseq>\|
−	DNA = <dnaseqindica>1596..1931#497..844#251..391#gagaagccaatccgcgaagctaccaaaccgagccaaaattttgatcgatcgatcggccggccggtgtctttgttgaggcgtgcaaggctcgtgctttcgccgagagggattaattagccgcgcctccagcatctccggcctccatagagatcccagcttataattaaagctgtcaagagtcgttttggttgttaggcttaaagttaactactgctggctagctaggactaagagatccgagggagcagacatggctgctgctacttcgaccatgtccctgcttcctcccatcacccagcagcagcggtggcacgccgccgactccctcgtcgtcctcgcctcccgctgccacaactctcgccgccgccgccgctgccgctacgtcgtgccggtacgtacatgcaccatcctctttcttctccggtgaatcaatggttggagaagaagaatccgaatgaaatgtaaattaaatatgtatgtggatgtggtggtgcagagggcgaggctgttcgggccggcgatcttcgaggcgtcgaagctgaaggtgctgttcctgggggtggacgaggagaagcaccagcacccggggaagctgccgcggacgtacacgctgacgcacagcgacgtgacggcgaggctgacgctggcggtgtcgcacaccatcaaccgggcgcagctgcaggggtggtacaacaagctgcagcgggacgaggtggtggcggagtggaagaaggtgcagggccacatgtcgctgcacgtccactgccacatctccggcggccacgtcctcctcgacctcatcgccggcctccgctactacatcttccgcaaggagctccccgtggtacgtacgtggcccctttcctcgtcgctcgctttactgatgctctcttcttctttcagacttggagaccacaagcttttttccttttttttttcccctttgctcttttcatttttgcaatcaagacgtactctgtgtcaatgtccctgagataattgatgggatccaataattcttgtctgctaaagcaggcaaatcccttgactttctagatctgattttagacactgttattagtggcaccaaaaactgatctccaacaagtaggggaaacaattttaatctctcagattggcatccatccatctgttacatatcaattaaatcgttataaaaaaaattaaaatatttgataatatagattcacatataatatgtaagtttaaattcgacttttataagttgtaataaatataaccaatcaaactctaattagtttactatgttcactgttaaatttgttacttttattataacttgtataagtcaaatgtcaaatttaaacttatatgtttgtggtgcaatatattatatgttaatctattttatcaactttttaagaatattatatactagtgaaattaatcaactgtgttcaaagttgcatgcccacttgacacgtgccaaacacgacttggaagttcagatgtgagaataaaaatcgaaatttttgaacagcttcctgaaattgattaattcgagcctaatcgcttgctttggttgaccgttgactcggcgcgtgttcggccaggttctgaaggcgttcgtccacggcgacggcaacctgttcagccggcacccggagctggaggaggccacggtgtgggtctacttccactccaacctcccacgcttcaaccgcgtcgagtgctggggcccgctccgcgacgccggagcgccgcccgaggaagacgacgccgtcgccgccgcggcggccgaggaggcggcggcggagcagatgcccgcggccggcgagtggccgcggcggtgcccggggcagtgcgactgctgcttcccgccatacagcctcatcccctggccgcaccagcacgacgtcgccgccgccgacggccagccgcagcagtgacggcggcgccgccgcgattcgtagattagcgaattcgtttggttgccatggtacacctacacgcatgcaatgtcgccaaatgacgctgcgtgctttgcgttaaattctttaattattcgtagtggcatttagctcagctcagctcagctctgcaattagcacatatttgattagctttagggaatgagtgtggtgagcttgtaaatagaagaacactagtagatggcaagcaaatggaaacgatcgatgatgcagtagatgttactgcaaaaatggcaattattagatgaagtcgacacacaaagacagatctcgtttcatttgtacattctacagtctacgtcgatgaggacatgactggatttgtatagcaaattagtactagcagctaataagtgtggattaattatgaaacacgattgttt</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001070293.2 RefSeq:Os09g0532000]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 9]]~~
−	~~[[Category:~~Chromosome 9]]

← Older revision		Revision as of 21:02, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os09g0532000\|		GeneName = Os09g0532000\|