Os10g0419200 - Revision history

Rice2012 at 08:44, 13 June 2015

2015-06-13T08:44:17Z

Lmw2015: /* Structured Information */

2015-06-12T04:00:02Z

‎Structured Information

Xukun: /* Annotated Information */

2014-05-16T06:33:02Z

‎Annotated Information

Xukun: /* Annotated Information */

2014-05-16T06:18:16Z

‎Annotated Information

Xukun: /* Annotated Information */

2014-05-16T06:14:20Z

‎Annotated Information

Xukun: /* Labs working on this gene */

2014-05-16T06:07:28Z

‎Labs working on this gene

Xukun: /* References */

2014-05-16T06:06:35Z

‎References

Xukun: /* References */

2014-05-16T05:53:28Z

‎References

Xukun: /* Function */

2014-05-16T05:50:46Z

‎Function

Xukun: /* Function */

2014-05-16T05:31:36Z

‎Function

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 </references>
+== Structured Information ==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]

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 </references>
 [[Category:Genes]]
 [[Category:Japonica mRNA]]

@@ Line 3: / Line 3: @@
 ==Annotated Information==
 ===Function===
-*Rice Indeterminate 1 ('''''RID1''''') gene , which encodes a Cys-2/His-2-type zinc ﬁnger transcription factor, acts as the master switch for the transition from the vegetative to reproductive phase. Firstly, '''''RID1''''' is controlling the phase transition and initiation of ﬂoral induction. In addition, the ''Hd3a/RFL1/FTL'' complex acts as the immediate inducer of ﬂowering. Once the phase transition is induced with the activation of '''''RID1''''', ﬂowering signal is transduced and regulated through the various pathways and eventually integrated with FT-like proteins to induce ﬂowering <ref name="ref1" />.
+[[File:rid1mut.jpg|right|thumb|200px|'''Figure 1.''' ''RID1 Mutant VS. WT(from reference<ref name="ref1" />).'']]
 ===Mutation===
 *A '''''RID1''''' knockout (''rid1''), mutated by T-DNA insertion, never headed after growing for >500 days under a range of growth conditions and is thus referred to as a never-ﬂowering phenotype. Figure 1 shows the phenotypes of ''rid1'' mutant (Left)and WT (Right) plants at maturity stage<ref name="ref1" />.
-*This mutation-suppressed expression of the genes is known to be involved in ﬂowering regulation, especially in the ''Ehd1/Hd3a'' pathway and a series of ''RFT'' homologs<ref name="ref1" />.
+*This mutation-suppressed expression of the genes is known to be involved in ﬂowering regulation, especially in the ''Ehd1/Hd3a'' pathway and a series of ''RFT'' homologs<ref name="ref1" />. <br><br>
 ===Expression===
-*The RT-PCR analysis revealed a low but detectable level of '''''RID1''''' transcript in immature leaves, but none in the root, mature leaves, SAM, or other tissues examined. When expressing the '''''RID1''''' fused in frame with a GFP, signal was clearly detected in the outer epidermal cell of immature leaves and in the region immediately beneath the meristem where internodes are visible but not in other tissues<ref name="ref1" />.
+*The RT-PCR analysis revealed a low but detectable level of '''''RID1''''' transcript in immature leaves, but none in the root, mature leaves, SAM, or other tissues examined. When expressing the '''''RID1''''' fused in frame with a GFP, signal was clearly detected in the outer epidermal cell of immature leaves and in the region immediately beneath the meristem where internodes are visible but not in other tissues<ref name="ref1" />. <br><br>
 ===Subcellular localization===
-*The subcellular localization analysis by ''Changyin Wu et al''. suggests that '''''RID1''''' is a nuclear protein, which is expressed in nucleus<ref name="ref1" />.
+[[File:rid1model.jpg|right|thumb|200px|'''Figure 1.''' ''A proposed model for the initiation and integration of the ﬂowering pathways in rice(from reference<ref name="ref1" />).'']]
 ===Extention===

@@ Line 3: / Line 3: @@
 ==Annotated Information==
 ===Function===
-  Rice Indeterminate 1 ('''''RID1''''') gene , which encodes a Cys-2/His-2-type zinc ﬁnger transcription factor, acts as the master switch for the transition from the vegetative to reproductive phase. Firstly, '''''RID1''''' is controlling the phase transition and initiation of ﬂoral induction. In addition, the ''Hd3a/RFL1/FTL'' complex acts as the immediate inducer of ﬂowering. Once the phase transition is induced with the activation of '''''RID1''''', ﬂowering signal is transduced and regulated through the various pathways and eventually integrated with FT-like proteins to induce ﬂowering <ref name="ref1" />.
+*Rice Indeterminate 1 ('''''RID1''''') gene , which encodes a Cys-2/His-2-type zinc ﬁnger transcription factor, acts as the master switch for the transition from the vegetative to reproductive phase. Firstly, '''''RID1''''' is controlling the phase transition and initiation of ﬂoral induction. In addition, the ''Hd3a/RFL1/FTL'' complex acts as the immediate inducer of ﬂowering. Once the phase transition is induced with the activation of '''''RID1''''', ﬂowering signal is transduced and regulated through the various pathways and eventually integrated with FT-like proteins to induce ﬂowering <ref name="ref1" />.
 ===Mutation===
-  A '''''RID1''''' knockout (''rid1''), mutated by T-DNA insertion, never headed after growing for >500 days under a range of growth conditions and is thus referred to as a never-ﬂowering phenotype. Figure 1 shows the phenotypes of ''rid1'' mutant (Left) and WT (Right) plants at maturity stage<ref name="ref1" />.
+*A '''''RID1''''' knockout (''rid1''), mutated by T-DNA insertion, never headed after growing for >500 days under a range of growth conditions and is thus referred to as a never-ﬂowering phenotype. Figure 1 shows the phenotypes of ''rid1'' mutant (Left)and WT (Right) plants at maturity stage<ref name="ref1" />.
-  This mutation-suppressed expression of the genes is known to be involved in ﬂowering regulation, especially in the ''Ehd1/Hd3a'' pathway and a series of ''RFT'' homologs<ref name="ref1" />.
+*This mutation-suppressed expression of the genes is known to be involved in ﬂowering regulation, especially in the ''Ehd1/Hd3a'' pathway and a series of ''RFT'' homologs<ref name="ref1" />.
 ===Expression===
-  The RT-PCR analysis revealed a low but detectable level of '''''RID1''''' transcript in immature leaves, but none in the root, mature leaves, SAM, or other tissues examined. When expressing the '''''RID1''''' fused in frame with a GFP, signal was clearly detected in the outer epidermal cell of immature leaves and in the region immediately beneath the meristem where internodes are visible but not in other tissues<ref name="ref1" />.
+*The RT-PCR analysis revealed a low but detectable level of '''''RID1''''' transcript in immature leaves, but none in the root, mature leaves, SAM, or other tissues examined. When expressing the '''''RID1''''' fused in frame with a GFP, signal was clearly detected in the outer epidermal cell of immature leaves and in the region immediately beneath the meristem where internodes are visible but not in other tissues<ref name="ref1" />.
 ===Subcellular localization===
-  The subcellular localization analysis by ''Changyin Wu et al''. suggests that '''''RID1''''' is a nuclear protein, which is expressed in nucleus<ref name="ref1" />.
+*The subcellular localization analysis by ''Changyin Wu et al''. suggests that '''''RID1''''' is a nuclear protein, which is expressed in nucleus<ref name="ref1" />.
 ===Extention===
-  ''Changyin Wu et al.'' proposed a model to place '''''RID1''''' in the molecular pathways of flowering regulation in rice (Fig.2). There are two indispensable elements in the system. The first is the '''''RID1''''' gene controlling the phase transition and initiation of floral induction. The other is the ''Hd3a/RFL1/FTL'' complex acting as the immediate inducer of flowering. Completely abolishing the function of either element would cause never-flowering. Once the phase transition is induced with the activation of '''''RID1''''', flowering signaling is transduced and regulated through the various pathways, including ones yet to be identified. Signals from these pathways are eventually integrated with proteins of FTL genes such as Hd3a and RFT1 and thus induce flowering<ref name="ref1" />.
+*''Changyin Wu et al.'' proposed a model to place '''''RID1''''' in the molecular pathways of flowering regulation in rice (Fig.2). There are two indispensable elements in the system. The first is the '''''RID1''''' gene controlling the phase transition and initiation of floral induction. The other is the ''Hd3a/RFL1/FTL'' complex acting as the immediate inducer of flowering. Completely abolishing the function of either element would cause never-flowering. Once the phase transition is induced with the activation of '''''RID1''''', flowering signaling is transduced and regulated through the various pathways, including ones yet to be identified. Signals from these pathways are eventually integrated with proteins of FTL genes such as Hd3a and RFT1 and thus induce flowering<ref name="ref1" />.
 ==Labs working on this gene==

@@ Line 3: / Line 3: @@
 ==Annotated Information==
 ===Function===
-Rice Indeterminate 1 ('''''RID1''''') gene , which encodes a Cys-2/His-2-type zinc ﬁnger transcription factor, acts as the master switch for the transition from the vegetative to reproductive phase. Firstly, '''''RID1''''' is controlling the phase transition and initiation of ﬂoral induction. In addition, the ''Hd3a/RFL1/FTL'' complex acts as the immediate inducer of ﬂowering. Once the phase transition is induced with the activation of '''''RID1''''', ﬂowering signal is transduced and regulated through the various pathways and eventually integrated with FT-like proteins to induce ﬂowering<ref name="ref1" />.
+  Rice Indeterminate 1 ('''''RID1''''') gene , which encodes a Cys-2/His-2-type zinc ﬁnger transcription factor, acts as the master switch for the transition from the vegetative to reproductive phase. Firstly, '''''RID1''''' is controlling the phase transition and initiation of ﬂoral induction. In addition, the ''Hd3a/RFL1/FTL'' complex acts as the immediate inducer of ﬂowering. Once the phase transition is induced with the activation of '''''RID1''''', ﬂowering signal is transduced and regulated through the various pathways and eventually integrated with FT-like proteins to induce ﬂowering <ref name="ref1" />.
 ===Expression===
-Please input expression information here.
+  The RT-PCR analysis revealed a low but detectable level of '''''RID1''''' transcript in immature leaves, but none in the root, mature leaves, SAM, or other tissues examined. When expressing the '''''RID1''''' fused in frame with a GFP, signal was clearly detected in the outer epidermal cell of immature leaves and in the region immediately beneath the meristem where internodes are visible but not in other tissues<ref name="ref1" />.
-===Evolution===
+===Subcellular localization===
-Please input evolution information here.
+  The subcellular localization analysis by ''Changyin Wu et al''. suggests that '''''RID1''''' is a nuclear protein, which is expressed in nucleus<ref name="ref1" />.
-You can also add sub-section(s) at will.
+===Extention===
 ==Labs working on this gene==

@@ Line 14: / Line 14: @@
 ==Labs working on this gene==
-National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research, Huazhong Agricultural University, Wuhan 430070, China
+*National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research, Huazhong Agricultural University, Wuhan 430070, China
-Department of Crop Genetics, John Innes Centre, Norwich NR4 7UH, United Kingdom
+*Department of Crop Genetics, John Innes Centre, Norwich NR4 7UH, United Kingdom
 ==References==

@@ Line 19: / Line 19: @@
 ==References==
 * <ref name="ref1">
 Changyin Wu, Changjun You, Caishun Li, Tuan Long, Guoxing Chen, Mary E. Byrne, and Qifa Zhang (2008). RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice. Proc. Natl. Acad. Sci. USA 105,12915 -12920.
 </ref>
-* <ref name="ref2">
+</references>
 ==Structured Information==