Os10g0516100 - Revision history

Liming Pan: /* Phenotypic analysis */

2016-10-19T16:28:55Z

‎Phenotypic analysis

Liming Pan: /* Annotated Information */

2016-10-19T16:28:00Z

‎Annotated Information

Liming Pan: /* Annotated Information */

2016-10-19T16:27:28Z

‎Annotated Information

Liming Pan at 16:27, 19 October 2016

2016-10-19T16:27:17Z

192.168.72.52 at 12:49, 14 May 2015

2015-05-14T12:49:02Z

124.16.129.48 at 21:11, 22 July 2012

2012-07-22T21:11:34Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os10g0516100| Description = Similar to Glycine cleavage system H protein, mitochondrial precursor| Version = NM_001071595.1 GI:115482933 GeneID:4..."

2012-06-21T08:45:09Z

Created page with "{{JaponicaGene| GeneName = Os10g0516100| Description = Similar to Glycine cleavage system H protein, mitochondrial precursor| Version = NM_001071595.1 GI:115482933 GeneID:4..."

New page

{{JaponicaGene|
GeneName = Os10g0516100|
Description = Similar to Glycine cleavage system H protein, mitochondrial precursor|
Version = NM_001071595.1 GI:115482933 GeneID:4349114|
Length = 2042 bp|
Definition = Oryza sativa Japonica Group Os10g0516100, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|
AP = Chromosome 10:20350039..20352080|
CDS = 20350199..20350307,20350668..20350756,20351285..20351455,20351786..20351911|
GCID = <gbrowseImage1>
name=NC_008403:20350039..20352080
source=RiceChromosome10
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008403:20350039..20352080
source=RiceChromosome10
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggctctgaggctgtgggctagctcagctgccaatgccctcaagatctcatgcagtggagccaccagggctgcacctgcctactcaatctccagatacttctccactgttcttgatgggttgaagtacagctcctctcatgagtgggtcaagaatgatggctctgtggccacaattggaattacagaccatgctcagggccatctgggagaggtggtgttcgtggagctgccggaggcgggggcgaaggtgagccagggaggtgcattcggcaacgtggagagtgtgaaggccaccagcgacatcaactcccccatctccggtgaggtcgtcgaggttaacgacaagctctctgagacacccggcctgattaactcaagcccgtacgaggacgggtggatgatcaaggtgaagccgagcagcccgtcggagctggacgccctgctggacccggccaagtacaccaagcactgcgaggaggaagacgctcactag</cdnaseq>|
AA = <aaseq>MALRLWASSAANALKISCSGATRAAPAYSISRYFSTVLDGLKYS SSHEWVKNDGSVATIGITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDI NSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEE EDAH</aaseq>|
DNA = <dnaseqindica>161..269#630..718#1247..1417#1748..1873#ctctcctcctgagccaaacaattccctatcccctcatctcactgcagctttccactatactaccaccaccactgagctgccactactcatccagctaactaggagaaggaaaaaagaagaacacagatactttggtaacaagcaagaaattggcacagaaatggctctgaggctgtgggctagctcagctgccaatgccctcaagatctcatgcagtggagccaccagggctgcacctgcctactcaatctccagatacttctccactggtatagctagcttgagtagtagaattcatatcaaataaattttctgttgccttttgcaacaaagcatgtggttgttacaatgttctggttcctgtacagtcttgcattgtgccatgctatccttgcacccagttataaattgctgtggcttccttttttcttttctttcttttttacattctatattgttacattgactggtccatgctgtagttatacaccggagacatactaaatgattgaaaagggaagggaataaaatttagaaattccagttgttgaaaagagttgagtatacttgttgtaactatggtccctgttgatttaagccatggtgatgatttcatgctggtattgcagttcttgatgggttgaagtacagctcctctcatgagtgggtcaagaatgatggctctgtggccacaattggaattacagaccatgctcaggtgagccaaccaaaggagaaaatattccatgcctttcatgtgcaacaagattagttaaagcttaatgcatttctaaacagggcctaagtgtcaatttgctgttgtattctaaactacgtggcatgctacaaaatcaaatattctgccctctgctgcaacaactaacaacccttttcctgatatgtcacagaacattttcctttactacttttaagaaatatgatgaagtacctttgctgtaactttttttttcaaactaaatagaacatgtcttttgttactttaataagaaacaagataaaggaactaacttccactgcagaatgctagccagttactttttagtgctacacagtaatgatggcaattatttgaaaacaaaagtaacagtaagatggggggtaaaaaataatttgattggacctgactagatatatatttttttagataatgaatttttattaatccggtctctgtattcatgagggatatacatagccatgactagatatgtatgtatactcgcagggccatctgggagaggtggtgttcgtggagctgccggaggcgggggcgaaggtgagccagggaggtgcattcggcaacgtggagagtgtgaaggccaccagcgacatcaactcccccatctccggtgaggtcgtcgaggttaacgacaagctctctgagacacccggcctggtatgtactcccaccgtctcaaagagagtataacctccgttaaaaaaaatcaacttttgaaaataaatctaaacatacatttgtgcatattcattctcagaagttactttttttaacatagggcatattaacaataacgctgtaaaattacatgtgtctcttttttttttcaagactggtagcatgtccctgtttaaaggtgttagtttaattaaccggaatgtctctttgttaatttaattcattagtactctccacaaactagaattacaaattcttttttgcgagacaattttcaaaccctaatgctactgccaatggtggtgacagattaactcaagcccgtacgaggacgggtggatgatcaaggtgaagccgagcagcccgtcggagctggacgccctgctggacccggccaagtacaccaagcactgcgaggaggaagacgctcactaggctcttcctctctgttttttttcttcccattttgtcactccgacctaatttctccctgttgcaacaactgctctgtatccgtatacgattaataactgaatcttcaggctttgccatgtgttcagttggttctctgaacttctggtgggtctatctatttatctatgct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071595.1 RefSeq:Os10g0516100]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 10]]
[[Category:Chromosome 10]]

@@ Line 10: / Line 10: @@
 * Knockdown of the '''''OsGDCH''''' causes senescence of rice plants under ambient CO2
 ===Phenotypic analysis===
-* Under high CO 2 (0.8%) conditions, in which photorespiration is inhibited, no substantial difference in phenotype was seen between the OsGDCH-RNAi plants and WT plants.
+* Under high CO2 (0.8%) conditions, in which photorespiration is inhibited, no substantial difference in phenotype was seen between the '''''OsGDCH'''''-RNAi plants and WT plants.
-* However, after growth under ambient CO 2 (0.04%; photorespiratory conditions), obvious changes were observed in the SSPs. Yellowish spots resembling necrotic lesions appeared on the leaves after several hours of exposure to ambient CO2.
+* However, after growth under ambient CO2 (0.04%; photorespiratory conditions), obvious changes were observed in the SSPs. Yellowish spots resembling necrotic lesions appeared on the leaves after several hours of exposure to ambient CO2.
 * As time progressed, the plants underwent a progressive change in leaf colour from green to yellow, usually starting from the tips or the margins and spreading towards the leaf base (Fig. 2).
 * This phenotype mimicked a senescence syndrome (Quirino et al. 2000). The syndrome became more severe as time progressed, leading to a complete cessation of growth and finally to the death of SSPs, whereas these phenotypes were not seen in either the MSPs or WT (Fig. 2a–f).

@@ Line 3: / Line 3: @@
 ==Annotated Information==
 [[File:135-Os10g0516100.png|right|thumb|327px|'''Figure 2.''' ''Phenotypes of OsGDCH-RNAi plants.<ref name="ref1" />.'']]
 ===Function===
 * Glycine decarboxylase complex (GDC) is a multi-protein complex, comprising P-, H-, T- and L-protein subunits, which plays a major role in photorespiration in plants.

@@ Line 2: / Line 2: @@
 ==Annotated Information==
-[[File:135-Os10g0516100.png|right|thumb|427px|'''Figure 2.''' ''Phenotypes of OsGDCH-RNAi plants.<ref name="ref1" />.'']]
+[[File:135-Os10g0516100.png|right|thumb|327px|'''Figure 2.''' ''Phenotypes of OsGDCH-RNAi plants.<ref name="ref1" />.'']]
 ===Function===
 * Glycine decarboxylase complex (GDC) is a multi-protein complex, comprising P-, H-, T- and L-protein subunits, which plays a major role in photorespiration in plants.

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice '''''Os10g0516100''''' was reported as '''''OsGDCH''''' in 2013 <ref name="ref1" /> by researchers from China.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+* Glycine decarboxylase complex (GDC) is a multi-protein complex, comprising P-, H-, T- and L-protein subunits, which plays a major role in photorespiration in plants.
+* The '''''OsGDCH''''' is a typical photorespiratory gene
-===Expression===
+* Knockdown of the '''''OsGDCH''''' causes senescence of rice plants under ambient CO2
-Please input expression information here.
+===Phenotypic analysis===
+* Under high CO 2 (0.8%) conditions, in which photorespiration is inhibited, no substantial difference in phenotype was seen between the OsGDCH-RNAi plants and WT plants.
-===Evolution===
+* However, after growth under ambient CO 2 (0.04%; photorespiratory conditions), obvious changes were observed in the SSPs. Yellowish spots resembling necrotic lesions appeared on the leaves after several hours of exposure to ambient CO2.
-Please input evolution information here.
+* As time progressed, the plants underwent a progressive change in leaf colour from green to yellow, usually starting from the tips or the margins and spreading towards the leaf base (Fig. 2).
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
-Please input related labs here.
+* State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, China
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==
 		 [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 10]]

← Older revision		Revision as of 12:49, 14 May 2015
Line 20:		Line 20:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 10]]
−	~~GeneName = Os10g0516100\|~~
−	~~Description = Similar to Glycine cleavage system H protein, mitochondrial precursor\|~~
−	~~Version = NM_001071595.1 GI:115482933 GeneID:4349114\|~~
−	~~Length = 2042 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os10g0516100, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 10\|Chromosome 10]]\|~~
−	~~AP = Chromosome 10:20350039..20352080\|~~
−	~~CDS = 20350199..20350307,20350668..20350756,20351285..20351455,20351786..20351911\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008403:20350039..20352080~~
−	~~source=RiceChromosome10~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008403:20350039..20352080~~
−	~~source=RiceChromosome10~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atggctctgaggctgtgggctagctcagctgccaatgccctcaagatctcatgcagtggagccaccagggctgcacctgcctactcaatctccagatacttctccactgttcttgatgggttgaagtacagctcctctcatgagtgggtcaagaatgatggctctgtggccacaattggaattacagaccatgctcagggccatctgggagaggtggtgttcgtggagctgccggaggcgggggcgaaggtgagccagggaggtgcattcggcaacgtggagagtgtgaaggccaccagcgacatcaactcccccatctccggtgaggtcgtcgaggttaacgacaagctctctgagacacccggcctgattaactcaagcccgtacgaggacgggtggatgatcaaggtgaagccgagcagcccgtcggagctggacgccctgctggacccggccaagtacaccaagcactgcgaggaggaagacgctcactag</cdnaseq>\|
−	AA = <aaseq>MALRLWASSAANALKISCSGATRAAPAYSISRYFSTVLDGLKYS SSHEWVKNDGSVATIGITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDI NSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEE EDAH</aaseq>\|
−	DNA = <dnaseqindica>161..269#630..718#1247..1417#1748..1873#ctctcctcctgagccaaacaattccctatcccctcatctcactgcagctttccactatactaccaccaccactgagctgccactactcatccagctaactaggagaaggaaaaaagaagaacacagatactttggtaacaagcaagaaattggcacagaaatggctctgaggctgtgggctagctcagctgccaatgccctcaagatctcatgcagtggagccaccagggctgcacctgcctactcaatctccagatacttctccactggtatagctagcttgagtagtagaattcatatcaaataaattttctgttgccttttgcaacaaagcatgtggttgttacaatgttctggttcctgtacagtcttgcattgtgccatgctatccttgcacccagttataaattgctgtggcttccttttttcttttctttcttttttacattctatattgttacattgactggtccatgctgtagttatacaccggagacatactaaatgattgaaaagggaagggaataaaatttagaaattccagttgttgaaaagagttgagtatacttgttgtaactatggtccctgttgatttaagccatggtgatgatttcatgctggtattgcagttcttgatgggttgaagtacagctcctctcatgagtgggtcaagaatgatggctctgtggccacaattggaattacagaccatgctcaggtgagccaaccaaaggagaaaatattccatgcctttcatgtgcaacaagattagttaaagcttaatgcatttctaaacagggcctaagtgtcaatttgctgttgtattctaaactacgtggcatgctacaaaatcaaatattctgccctctgctgcaacaactaacaacccttttcctgatatgtcacagaacattttcctttactacttttaagaaatatgatgaagtacctttgctgtaactttttttttcaaactaaatagaacatgtcttttgttactttaataagaaacaagataaaggaactaacttccactgcagaatgctagccagttactttttagtgctacacagtaatgatggcaattatttgaaaacaaaagtaacagtaagatggggggtaaaaaataatttgattggacctgactagatatatatttttttagataatgaatttttattaatccggtctctgtattcatgagggatatacatagccatgactagatatgtatgtatactcgcagggccatctgggagaggtggtgttcgtggagctgccggaggcgggggcgaaggtgagccagggaggtgcattcggcaacgtggagagtgtgaaggccaccagcgacatcaactcccccatctccggtgaggtcgtcgaggttaacgacaagctctctgagacacccggcctggtatgtactcccaccgtctcaaagagagtataacctccgttaaaaaaaatcaacttttgaaaataaatctaaacatacatttgtgcatattcattctcagaagttactttttttaacatagggcatattaacaataacgctgtaaaattacatgtgtctcttttttttttcaagactggtagcatgtccctgtttaaaggtgttagtttaattaaccggaatgtctctttgttaatttaattcattagtactctccacaaactagaattacaaattcttttttgcgagacaattttcaaaccctaatgctactgccaatggtggtgacagattaactcaagcccgtacgaggacgggtggatgatcaaggtgaagccgagcagcccgtcggagctggacgccctgctggacccggccaagtacaccaagcactgcgaggaggaagacgctcactaggctcttcctctctgttttttttcttcccattttgtcactccgacctaatttctccctgttgcaacaactgctctgtatccgtatacgattaataactgaatcttcaggctttgccatgtgttcagttggttctctgaacttctggtgggtctatctatttatctatgct</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071595.1 RefSeq:Os10g0516100]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 10]]~~
−	~~[[Category:~~Chromosome 10]]

← Older revision		Revision as of 21:11, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os10g0516100\|		GeneName = Os10g0516100\|