Os11g0126900 - Revision history

Xysj2028: /* Evolution */

2017-05-09T13:38:51Z

‎Evolution

Xysj2028 at 13:38, 9 May 2017

2017-05-09T13:38:26Z

Xysj2028 at 13:38, 9 May 2017

2017-05-09T13:38:02Z

Xysj2028 at 13:16, 8 May 2017

2017-05-08T13:16:14Z

Xysj2028 at 13:15, 8 May 2017

2017-05-08T13:15:42Z

Xysj2028 at 13:13, 8 May 2017

2017-05-08T13:13:20Z

Yingyingbei: /* Function */

2014-05-24T04:41:19Z

‎Function

Yingyingbei: /* Annotated Information */

2014-05-24T04:32:48Z

‎Annotated Information

Yingyingbei: /* Function */

2014-05-24T03:19:43Z

‎Function

Yingyingbei: /* References */

2014-05-24T02:45:58Z

‎References

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 ===Evolution===
-According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, '''OsNAC10''' is in the subgroup Ⅰ(finger 3)<ref name="ref1" />.
+* According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, '''OsNAC10''' is in the subgroup Ⅰ<ref name="ref1" />.
 ===Knowledge Extension===
 *Name of NAC. It derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis  <ref name="ref3" />.

@@ Line 51: / Line 51: @@
 <ref name="ref8">
 Ooka H, Satoh K, Doi K,et al.(2003)."Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana."DNA Res., 10（6):239–247</ref>
-<references>
+</references>
 ==Structured Information==

@@ Line 1: / Line 1: @@
 The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
 ==Annotated Information==
@@ Line 18: / Line 16: @@
 According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, '''OsNAC10''' is in the subgroup Ⅰ(finger 3)<ref name="ref1" />.
 ===Knowledge Extension===
 *Name of NAC. It derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis  <ref name="ref3" />.

@@ Line 55: / Line 55: @@
 <ref name="ref8">
 Ooka H, Satoh K, Doi K,et al.(2003)."Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana."DNA Res., 10（6):239–247</ref>
 ==Structured Information==

@@ Line 56: / Line 56: @@
 Ooka H, Satoh K, Doi K,et al.(2003)."Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana."DNA Res., 10（6):239–247</ref>
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]

@@ Line 6: / Line 6: @@
 [[Image:finger.jpg|320px|thumb|right||'''Figure 1.'''''Difference in root growth of RCc3:OsNAC10 and GOS2:OsNAC10 plants. <ref name="ref1"/>).'']]
 '''''OsNAC10''''' plays important role in enhancing stress tolerance when overexpressed in rice.
-In Jeong, J. S's et al. research, they constructed two types of transgenic plants,'''''RCc3:OsNAC10''', '''GOS2:OsNAC10'''''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NT control plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the ''GOS2:OsNAC10'' plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition. Root volume, length, dry weight, and diameter of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'', and NT plants were measured after growth to the stage of reproduction. Root diameter of the RCc3:OsNAC10 plants was thicker than that of the GOS2:OsNAC10 and NT plants. The increase in root diameter of the ''RCc3:OsNAC10'' plants appears to be caused by an increase in cell number rather than cell size, as evidenced by the similar size of epidermal and exodermal cells between NT and ''RCc3:OsNAC10'' roots.(finger 2)<ref name="ref1" />
+In Jeong, J. S's et al. research, they constructed two types of transgenic plants,'''''RCc3:OsNAC10''', '''GOS2:OsNAC10'''''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NT control plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the ''GOS2:OsNAC10'' plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition. Root volume, length, dry weight, and diameter of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'', and NT plants were measured after growth to the stage of reproduction. Root diameter of the RCc3:OsNAC10 plants was thicker than that of the GOS2:OsNAC10 and NT plants. The increase in root diameter of the ''RCc3:OsNAC10'' plants appears to be caused by an increase in cell number rather than cell size, as evidenced by the similar size of epidermal and exodermal cells between NT and ''RCc3:OsNAC10'' roots.(finger 1)<ref name="ref1" />
 ===Expression===

@@ Line 4: / Line 4: @@
 ==Annotated Information==
 ===Function===
 '''''OsNAC10''''' plays important role in enhancing stress tolerance when overexpressed in rice.
-In Jeong, J. S's et al. research, they constructed two types of transgenic plants,'''''RCc3:OsNAC10''', '''GOS2:OsNAC10'''''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NT control plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the ''GOS2:OsNAC10'' plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition. Root volume, length, dry weight, and diameter of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'', and NT plants were measured after growth to the stage of reproduction. Root diameter of the RCc3:OsNAC10 plants was thicker than that of the GOS2:OsNAC10 and NT plants. The increase in root diameter of the ''RCc3:OsNAC10'' plants appears to be caused by an increase in cell number rather than cell size, as evidenced by the similar size of epidermal and exodermal cells between NT and ''RCc3:OsNAC10'' roots.<ref name="ref1" />
+In Jeong, J. S's et al. research, they constructed two types of transgenic plants,'''''RCc3:OsNAC10''', '''GOS2:OsNAC10'''''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NT control plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the ''GOS2:OsNAC10'' plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition. Root volume, length, dry weight, and diameter of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'', and NT plants were measured after growth to the stage of reproduction. Root diameter of the RCc3:OsNAC10 plants was thicker than that of the GOS2:OsNAC10 and NT plants. The increase in root diameter of the ''RCc3:OsNAC10'' plants appears to be caused by an increase in cell number rather than cell size, as evidenced by the similar size of epidermal and exodermal cells between NT and ''RCc3:OsNAC10'' roots.(finger 2)<ref name="ref1" />
 ===Expression===
-* '''''OsNAC10''''' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]
+* '''''OsNAC10''''' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 2 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 2.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]
-* The expression of '''''OsNAC10''''' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)
+* The expression of '''''OsNAC10''''' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 2 B)
 * 34 root-specific and 40 leaf-specific target genes were up-regulated when '''''OsNAC10''''' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.
 ===Evolution===
-According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, '''OsNAC10''' is in the subgroup Ⅰ(finger 2)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]
+According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, '''OsNAC10''' is in the subgroup Ⅰ(finger 3)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 3.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]
 ===Knowledge Extension===
-[[File:finger 3.jpg|right|thumb|320px|'''Figure 3.'''''NAC's structure and regulation pathway (from reference <ref name="ref4" />).'']]
+[[File:finger 3.jpg|right|thumb|320px|'''Figure 4.'''''NAC's structure and regulation pathway (from reference <ref name="ref4" />).'']]
 *Name of NAC. It derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis  <ref name="ref3" />.
-*Structure of NAC. NAC proteins share a well conserved N-terminal NAC domain (∼150 amino acids; aa) and a diversified C-terminal transcription regulatory (TR) region.(finger 3a)<ref name="ref4" />The DB ability of NAC TFs is confined to the NAC domain which can be divided into five subdomains.(A–E;Figure 3a (i))The highly conserved positively charged subdomains C and D bind to DNA, whereas subdomain A may be involved in the formation of a functional dimer, and the divergent subdomains B and E may be responsible for the functional diversity of NAC genes.<ref name="ref5" /><ref name="ref6" /><ref name="ref7" /><ref name="ref8" />The TRR, generally lying at the highly diverged C-terminal [Figure 3a (i)], can either activate or repress transcription.<ref name="ref4" />
+*Structure of NAC. NAC proteins share a well conserved N-terminal NAC domain (∼150 amino acids; aa) and a diversified C-terminal transcription regulatory (TR) region.(finger 4a)<ref name="ref4" />The DB ability of NAC TFs is confined to the NAC domain which can be divided into five subdomains.(A–E;Figure 3a (i))The highly conserved positively charged subdomains C and D bind to DNA, whereas subdomain A may be involved in the formation of a functional dimer, and the divergent subdomains B and E may be responsible for the functional diversity of NAC genes.<ref name="ref5" /><ref name="ref6" /><ref name="ref7" /><ref name="ref8" />The TRR, generally lying at the highly diverged C-terminal [Figure 3a (i)], can either activate or repress transcription.<ref name="ref4" />
-*Regulation of NAC TFs. Expression of stress-responsive NACs may be tightly regulated by several stress-responsive cis-acting elements contained in the promoter region ( Figure 3b).<ref name="ref4" />These include the ABREs (ABA-responsive elements), DREs, LTREs (Low-temperature responsive elements), MYB (Myeloblastosis) and MYC (Myelocytomatosis) binding sites, W-Box, jasmonic acid responsive element and salicylic acid responsive element
+*Regulation of NAC TFs. Expression of stress-responsive NACs may be tightly regulated by several stress-responsive cis-acting elements contained in the promoter region ( Figure 4b).<ref name="ref4" />These include the ABREs (ABA-responsive elements), DREs, LTREs (Low-temperature responsive elements), MYB (Myeloblastosis) and MYC (Myelocytomatosis) binding sites, W-Box, jasmonic acid responsive element and salicylic acid responsive element
 You can also add sub-section(s) at will.

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 Puranik, S.,Sahu, PP. Srivastava,PS.,et al. (2012). "NAC proteins: regulation and role in stress tolerance." Trends Plant Sci 17(6): 369-381.</ref>
 <ref name="ref5">
-Ernst HA1, Olsen AN, Larsen S,et al.(2004)."Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors."EMBO Rep.5(3):297–303</ref>
+Ernst HA, Olsen AN, Larsen S,et al.(2004)."Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors."EMBO Rep.5(3):297–303</ref>
 <ref name="ref6">
-Jensen MK1, Kjaersgaard T, Nielsen MM, et al.(2010)."The Arabidopsis thaliana NAC transcription factor family: structure-function relationships and determinants of ANAC019 stress signalling." Biochem J.426(2):183-96</ref>
+Jensen MK, Kjaersgaard T, Nielsen MM, et al.(2010)."The Arabidopsis thaliana NAC transcription factor family: structure-function relationships and determinants of ANAC019 stress signalling." Biochem J.426(2):183-96</ref>
 <ref name="ref7">
-Chen Q1, Wang Q, Xiong L, et al.(2011)"A structural view of the conserved domain of rice stress-responsive NAC1." Protein Cell,2(1):55–63</ref>
+Chen Q, Wang Q, Xiong L, et al.(2011)"A structural view of the conserved domain of rice stress-responsive NAC1." Protein Cell,2(1):55–63</ref>
 <ref name="ref8">
-Ooka H1, Satoh K, Doi K,et al.(2003)."Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana."DNA Res., 10（6):239–247</ref>
+Ooka H, Satoh K, Doi K,et al.(2003)."Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana."DNA Res., 10（6):239–247</ref>
 ==Structured Information==
 {{JaponicaGene|