Os12g0170400 - Revision history

Liman: /* References */

2016-11-20T07:21:57Z

‎References

Liman: /* Mutation */

2016-11-20T07:21:30Z

‎Mutation

Liman at 07:21, 20 November 2016

2016-11-20T07:21:14Z

Liman at 07:09, 20 November 2016

2016-11-20T07:09:12Z

Liman at 13:58, 15 October 2016

2016-10-15T13:58:55Z

192.168.72.52 at 03:37, 15 May 2015

2015-05-15T03:37:54Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os12g0170400| Description = Zinc finger, C2H2-type domain containing protein| Version = NM_001072803.1 GI:115487567 GeneID:4351624| Length = 242..."

2012-06-21T10:23:14Z

Created page with "{{JaponicaGene| GeneName = Os12g0170400| Description = Zinc finger, C2H2-type domain containing protein| Version = NM_001072803.1 GI:115487567 GeneID:4351624| Length = 242..."

New page

{{JaponicaGene|
GeneName = Os12g0170400|
Description = Zinc finger, C2H2-type domain containing protein|
Version = NM_001072803.1 GI:115487567 GeneID:4351624|
Length = 2428 bp|
Definition = Oryza sativa Japonica Group Os12g0170400, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
AP = Chromosome 12:3579463..3581890|
CDS = 3580322..3581719|
GCID = <gbrowseImage1>
name=NC_008405:3579463..3581890
source=RiceChromosome12
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008405:3579463..3581890
source=RiceChromosome12
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggatcgcgaccagatgacgaacacgatgcgcgatcaggctgcgaacctgacctccatgaatcctctcttctacccgttcatggcggatgacgctctcctcggcatggcgccgccgccgccgcagcagctgctgccgtcggttagcatccagcacatggactggagcccggacacgatgctggacaacctcaccttcatcgaggagaagatccggcaggtcaaggacgtcatccgatccatggccggccgccgcgcctcgtcgtcgtcggcggcgacgccggagcagcagcttgtcaacgccgacctgacatgcctcatcgtccagctcatctccaccgccggcagcctcctcccgtcgctcaagaactcctcgttcctcagccgcaccaccccgccgcccgccgccgcggccggagccgcacaagcggtcagcctcgccgccggcgagagctccagctcggctcgtaataacgagacgaacagggaagatgaggaggagcagatgggtagccccgactacgacgagctcttcaaggtatggactaacggcggcgccatggacgaatgcgtcggcgctgccggcgacgagcaggatgcgagggagaatccggcggcggcggcggaggaggagaagtacgaggtgctgcagctggaggaggacgagatcctggcgccgcacacgcacttctgcggcatctgcggcaaggggttcaagcgcgacgcgaacctgcggatgcacatgcgcgggcacggcgacgagtacaagagcgcggcggcgctggcgaagccgccgccgccgccggagggggaggagcagccgccgcagccggagaggaggtactcgtgcccgcacgccgggtgcaagcggaaccggatgcacgcgagcttccagccgctgaagacgatcctgtgcgtgaagaaccactacaagcggagccactgcgagaagcgccatgtctgcggccgctgcggcgccaagcgcttctccgtcatggccgacctcaagacccacgagaagcactgcggccgcgaccgctggctctgctcctgcggcaccagcttctcccgcaaggacaagctcttcgcccacgtcgccctcttccagggccacgcccccgctctcccccctcccccgccgccgccgacgtcgggtcgccgccgccacaagcaggaggagccggagttcacgtggggcggcggcggcggcaatgagtttcttgacgtcaaagggatcgccggcgtcgggtccggctccggtggtggggatgagttcttctccgcgggaagcttcggcgccatggatttcggattcgggcagttggatgcttcgctcgcgatgctgctgccatccgagcaattcgcgggtgatcatcaggaggagaatggtgacaagtga</cdnaseq>|
AA = <aaseq>MDRDQMTNTMRDQAANLTSMNPLFYPFMADDALLGMAPPPPQQL LPSVSIQHMDWSPDTMLDNLTFIEEKIRQVKDVIRSMAGRRASSSSAATPEQQLVNAD LTCLIVQLISTAGSLLPSLKNSSFLSRTTPPPAAAAGAAQAVSLAAGESSSSARNNET NREDEEEQMGSPDYDELFKVWTNGGAMDECVGAAGDEQDARENPAAAAEEEKYEVLQL EEDEILAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQPPQ PERRYSCPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMAD LKTHEKHCGRDRWLCSCGTSFSRKDKLFAHVALFQGHAPALPPPPPPPTSGRRRHKQE EPEFTWGGGGGNEFLDVKGIAGVGSGSGGGDEFFSAGSFGAMDFGFGQLDASLAMLLP SEQFAGDHQEENGDK</aaseq>|
DNA = <dnaseqindica>860..2257#ggcgtccatggcgacgagctgggagtgattccccctgcttgatttgattgggtatgtgatctctgatcagcaacttgtaagcttcttctgttttggcttgatgctggattggaaccatcttgctggtgattttgttttggcttcttcttgtacagttgacagtttcgttctaggttattatggtttggaactttggatggatataagtttcccctgttttctgcgatcttgggaggatagagagggtgttcttggatctaaggcttttccttattgttcttgtagaaatttcttcagggtttacggttaactagttaagtttaggtgaattgttaggttattctgaactaagaaggagacttttggttcttaagatatcttgttcctgcagcctgcagtagttgcaaaattttttctttgttcttaggaaaaaaaaaggatgttggtttctcctgtcttgtgttagtaataaattagtgattctgaaaatgatcaaagctggtagtatcttttaattcgtagcatattcgttcagagaagaaccttgatcaagtaatttatgggaaaaaaaatcgatttaaacttcattttagcattgctgactgtgtcagtgaaaaggatggagcagattgcaaatcttgcatcacttgataatctagtagattactactactaattagttcccagtttcttgacttttcaaccaactcaaaaataacatcaaatagtttcttgggggaaaaaaaacaagaacaatctttgaactggctaacgatcttgattcctcttcctctgcagatttcagaggcgccatctcttttcctaataaagatcacgcgagattattcagaagcttgcaatggatcgcgaccagatgacgaacacgatgcgcgatcaggctgcgaacctgacctccatgaatcctctcttctacccgttcatggcggatgacgctctcctcggcatggcgccgccgccgccgcagcagctgctgccgtcggttagcatccagcacatggactggagcccggacacgatgctggacaacctcaccttcatcgaggagaagatccggcaggtcaaggacgtcatccgatccatggccggccgccgcgcctcgtcgtcgtcggcggcgacgccggagcagcagcttgtcaacgccgacctgacatgcctcatcgtccagctcatctccaccgccggcagcctcctcccgtcgctcaagaactcctcgttcctcagccgcaccaccccgccgcccgccgccgcggccggagccgcacaagcggtcagcctcgccgccggcgagagctccagctcggctcgtaataacgagacgaacagggaagatgaggaggagcagatgggtagccccgactacgacgagctcttcaaggtatggactaacggcggcgccatggacgaatgcgtcggcgctgccggcgacgagcaggatgcgagggagaatccggcggcggcggcggaggaggagaagtacgaggtgctgcagctggaggaggacgagatcctggcgccgcacacgcacttctgcggcatctgcggcaaggggttcaagcgcgacgcgaacctgcggatgcacatgcgcgggcacggcgacgagtacaagagcgcggcggcgctggcgaagccgccgccgccgccggagggggaggagcagccgccgcagccggagaggaggtactcgtgcccgcacgccgggtgcaagcggaaccggatgcacgcgagcttccagccgctgaagacgatcctgtgcgtgaagaaccactacaagcggagccactgcgagaagcgccatgtctgcggccgctgcggcgccaagcgcttctccgtcatggccgacctcaagacccacgagaagcactgcggccgcgaccgctggctctgctcctgcggcaccagcttctcccgcaaggacaagctcttcgcccacgtcgccctcttccagggccacgcccccgctctcccccctcccccgccgccgccgacgtcgggtcgccgccgccacaagcaggaggagccggagttcacgtggggcggcggcggcggcaatgagtttcttgacgtcaaagggatcgccggcgtcgggtccggctccggtggtggggatgagttcttctccgcgggaagcttcggcgccatggatttcggattcgggcagttggatgcttcgctcgcgatgctgctgccatccgagcaattcgcgggtgatcatcaggaggagaatggtgacaagtgaaggtgcacatgatgcgtagcgagttgcatatgatcatatatatatatatatatatatatatatgacgtatgtatttcatggtgtaatagcattgtgttatctaaagtggaagaagttgttcttcccatcttgtaccatcttatatgcacttctttattaagatagttatgc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072803.1 RefSeq:Os12g0170400]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 12]]
[[Category:Chromosome 12]]

@@ Line 29: / Line 29: @@
 <references>
 * <ref name="ref1">
 </ref>
 </references>
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]]

@@ Line 9: / Line 9: @@
 * A yeast one-hybrid assay showed that ART1 has a transcriptional activation potential and interacts with the promoter region of STAR1, an important factor in rice Al tolerance.
 ===Mutation===
-[[File:Os12g0170400-1.png|right|thumb|400px|'''Figure 1. Phenotype of the art1 Mutant.''' '' <ref name="ref1" />.'']]
+[[File:Os12g0170400-1.png|right|thumb|300px|'''Figure 1. Phenotype of the art1 Mutant.''' '' <ref name="ref1" />.'']]
 * There is no difference in the root and shoot morphology between the art1 and its wild type. In the absence of Al, the mutant showed root growth similar to that of the wild type (Figure 1A). However, in the presence of Al, the root elongation of art1 was inhibited significantly more than in the wild type. At 10, 30, and 50 mMAl, root elongation was inhibited by 64, 83, and 88%, respectively, in art1 and was inhibited by 27, 49, and 68%, respectively, in the wild type (Figure 1A). In neutral soil, both lines grew similarly (Figure 1B), while in acid soil, the root growth of art1 was completely inhibited. The wild type and art1 were equally sensitive to a low pH and to other metals, including Cd, La, Zn, and Cu (Figures 1C and 1D).
 ===Expression ===
 * '''''ART1''''' is constitutively expressed in the root, and the expression level is not affected by Al treatment

@@ Line 6: / Line 6: @@
 ===Function===
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+* ART1 encodes a C2H2-type zinc finger transcription factor(for Al resistance transcription factor 1), which specifically regulates the expression of genes related to Al tolerance in rice (Oryza sativa).
+* A yeast one-hybrid assay showed that ART1 has a transcriptional activation potential and interacts with the promoter region of STAR1, an important factor in rice Al tolerance.
 ===Mutation===
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+[[File:Os12g0170400-1.png|right|thumb|400px|'''Figure 1. Phenotype of the art1 Mutant.''' '' <ref name="ref1" />.'']]
+* There is no difference in the root and shoot morphology between the art1 and its wild type. In the absence of Al, the mutant showed root growth similar to that of the wild type (Figure 1A). However, in the presence of Al, the root elongation of art1 was inhibited significantly more than in the wild type. At 10, 30, and 50 mMAl, root elongation was inhibited by 64, 83, and 88%, respectively, in art1 and was inhibited by 27, 49, and 68%, respectively, in the wild type (Figure 1A). In neutral soil, both lines grew similarly (Figure 1B), while in acid soil, the root growth of art1 was completely inhibited. The wild type and art1 were equally sensitive to a low pH and to other metals, including Cd, La, Zn, and Cu (Figures 1C and 1D).
 ===Expression ===
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+* '''''ART1''''' is constitutively expressed in the root, and the expression level is not affected by Al treatment
 ===Evolution===
+* BLAST searches revealed that ART1 has five close homologs in rice.
 You can also add sub-section(s) at will.
 ==Labs working on this gene==

@@ Line 1: / Line 1: @@
-The rice gene  was reported as '''''''''' in 20<ref name="ref1" /> by researchers from China and Japan.
+The rice gene Os12g0170400 was reported as '''''art1''''' in 20<ref name="ref1" /> by researchers from Japan.
 ==Annotated Information==
 ===Gene Symbol===
-*''''' <=>
+*'''''Os12g0170400 <=> art1,Osart1
 ===Function===
@@ Line 19: / Line 19: @@
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
+* Research Institute for Bioresources, Okayama University, Kurashiki 710-0046, Japan
 ==References==
 <references>

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice gene  was reported as '''''''''' in 20<ref name="ref1" /> by researchers from China and Japan.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
 ===Evolution===
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]]

@@ Line 1: / Line 1: @@
-{{JaponicaGene|
+Please input one-sentence summary here.
-  ORGANISM  Oryza sativa Japonica Group
+==Annotated Information==
-            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
+===Function===
-            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
+Please input function information here.
-            clade; Ehrhartoideae; Oryzeae; Oryza.
+===Expression===
-Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
+Please input expression information here.
-AP = Chromosome 12:3579463..3581890|
-CDS = 3580322..3581719|
+===Evolution===
-GCID = <gbrowseImage1>
+Please input evolution information here.
-name=NC_008405:3579463..3581890
-source=RiceChromosome12
+You can also add sub-section(s) at will.
-preset=GeneLocation
-</gbrowseImage1>|
+==Labs working on this gene==
-GSID = <gbrowseImage2>
+Please input related labs here.
-name=NC_008405:3579463..3581890
-source=RiceChromosome12
+==References==
-preset=GeneLocation
+Please input cited references here.
-</gbrowseImage2>|
-CDNA = <cdnaseq>atggatcgcgaccagatgacgaacacgatgcgcgatcaggctgcgaacctgacctccatgaatcctctcttctacccgttcatggcggatgacgctctcctcggcatggcgccgccgccgccgcagcagctgctgccgtcggttagcatccagcacatggactggagcccggacacgatgctggacaacctcaccttcatcgaggagaagatccggcaggtcaaggacgtcatccgatccatggccggccgccgcgcctcgtcgtcgtcggcggcgacgccggagcagcagcttgtcaacgccgacctgacatgcctcatcgtccagctcatctccaccgccggcagcctcctcccgtcgctcaagaactcctcgttcctcagccgcaccaccccgccgcccgccgccgcggccggagccgcacaagcggtcagcctcgccgccggcgagagctccagctcggctcgtaataacgagacgaacagggaagatgaggaggagcagatgggtagccccgactacgacgagctcttcaaggtatggactaacggcggcgccatggacgaatgcgtcggcgctgccggcgacgagcaggatgcgagggagaatccggcggcggcggcggaggaggagaagtacgaggtgctgcagctggaggaggacgagatcctggcgccgcacacgcacttctgcggcatctgcggcaaggggttcaagcgcgacgcgaacctgcggatgcacatgcgcgggcacggcgacgagtacaagagcgcggcggcgctggcgaagccgccgccgccgccggagggggaggagcagccgccgcagccggagaggaggtactcgtgcccgcacgccgggtgcaagcggaaccggatgcacgcgagcttccagccgctgaagacgatcctgtgcgtgaagaaccactacaagcggagccactgcgagaagcgccatgtctgcggccgctgcggcgccaagcgcttctccgtcatggccgacctcaagacccacgagaagcactgcggccgcgaccgctggctctgctcctgcggcaccagcttctcccgcaaggacaagctcttcgcccacgtcgccctcttccagggccacgcccccgctctcccccctcccccgccgccgccgacgtcgggtcgccgccgccacaagcaggaggagccggagttcacgtggggcggcggcggcggcaatgagtttcttgacgtcaaagggatcgccggcgtcgggtccggctccggtggtggggatgagttcttctccgcgggaagcttcggcgccatggatttcggattcgggcagttggatgcttcgctcgcgatgctgctgccatccgagcaattcgcgggtgatcatcaggaggagaatggtgacaagtga</cdnaseq>|
+==Structured Information==
-AA = <aaseq>MDRDQMTNTMRDQAANLTSMNPLFYPFMADDALLGMAPPPPQQL                     LPSVSIQHMDWSPDTMLDNLTFIEEKIRQVKDVIRSMAGRRASSSSAATPEQQLVNAD                     LTCLIVQLISTAGSLLPSLKNSSFLSRTTPPPAAAAGAAQAVSLAAGESSSSARNNET                     NREDEEEQMGSPDYDELFKVWTNGGAMDECVGAAGDEQDARENPAAAAEEEKYEVLQL                     EEDEILAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQPPQ                     PERRYSCPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMAD                     LKTHEKHCGRDRWLCSCGTSFSRKDKLFAHVALFQGHAPALPPPPPPPTSGRRRHKQE                     EPEFTWGGGGGNEFLDVKGIAGVGSGSGGGDEFFSAGSFGAMDFGFGQLDASLAMLLP                     SEQFAGDHQEENGDK</aaseq>|
+     [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]]