Os12g0207000 - Revision history

Zhennan at 02:33, 27 March 2017

2017-03-27T02:33:38Z

Liman at 07:38, 20 December 2016

2016-12-20T07:38:53Z

Liman at 07:31, 20 December 2016

2016-12-20T07:31:34Z

Liman at 13:59, 15 October 2016

2016-10-15T13:59:11Z

192.168.72.52 at 03:39, 15 May 2015

2015-05-15T03:39:17Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os12g0207000| Description = Transcription factor| Version = NM_001072917.1 GI:115487795 GeneID:4351753| Length = 5543 bp| Definition = Oryza sa..."

2012-06-21T10:24:49Z

Created page with "{{JaponicaGene| GeneName = Os12g0207000| Description = Transcription factor| Version = NM_001072917.1 GI:115487795 GeneID:4351753| Length = 5543 bp| Definition = Oryza sa..."

New page

{{JaponicaGene|
GeneName = Os12g0207000|
Description = Transcription factor|
Version = NM_001072917.1 GI:115487795 GeneID:4351753|
Length = 5543 bp|
Definition = Oryza sativa Japonica Group Os12g0207000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
AP = Chromosome 12:5583799..5589341|
CDS = 5585225..5585409,5586995..5587079,5587719..5587783,5587940..5588039,5588262..5588303<br>,5588453..5588494,5588712..5589005|
GCID = <gbrowseImage1>
name=NC_008405:5583799..5589341
source=RiceChromosome12
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008405:5583799..5589341
source=RiceChromosome12
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggggaggggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgaccttctgcaagcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcgatgccgaggtggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaacaacaatgtgaaggctacaattgacaggtacaagaaggcgcatgcttgtggctcaacttctggtgcacctctcatagaggtcaatgctcagcaatactaccagcaggagtctgccaaactgcgccaccagattcagatgctgcaaaacaccaacaagcacctggttggcgataatgtgagcaacctgtcactgaaggagctgaagcaacttgaaagccgcctggagaaaggcatttcaaagatcagagccaggaagaatgaactgctggcttcagagatcaattacatggccaaaagggagattgagcttcagaacgacaacatggacctcagaaccaagattgctgaggaggagcagcagctgcagcaggtgacggtggcccggtcggccgccatggagctgcaggctgcggcggcggcgcagcagcagcagcagaatccgttcgcggtggcggcggcgcagctggacatgaagtgcttcttcccgttgaacctgttcgaggcggcggcgcaggtgcaggccgtggcggcgcagcgccagcagatcatccccaccgagctcaacctcggctaccaccaccaccttgccattcccggcgccgccgccgccgacgcgccgcctcctcacttctga</cdnaseq>|
AA = <aaseq>MGRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVA LIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRH QIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKRE IELQNDNMDLRTKIAEEEQQLQQVTVARSAAMELQAAAAAQQQQQNPFAVAAAQLDMK CFFPLNLFEAAAQVQAVAAQRQQIIPTELNLGYHHHLAIPGAAAADAPPPHF</aaseq>|
DNA = <dnaseqindica>1427..1611#3197..3281#3921..3985#4142..4241#4464..4505#4655..4696#4914..5207#agaaaacccaccaactggagctctcctttcctactccaagaaacgaaggtagagaaagaaagatcagatcagcttcaggaccaattttagctaggttatatatctctttgcgtgctaatgtgttttagttatctgggtgtgtgtagagttctttgttaaggcactgattcagctgcagtttagattcaagtttgtatgttctctctttgaggaaaagaaacccttttcctgtgcttcgagttcttgcaaagagaaactgtgatgcttggcttccagtttgatgcttctttgttcagattggaaattcttcctagcttctttctctatttatgtagcaaggattctttccggcccagtgatcctggtttcttttggaaggtttcagttttttcgttctttcttgaaatttctcttcttgccttaggcagatctttgatcttgtgaggagacaggagaaaaggaagaagctagtttcctgcggccgacctcttgcttctcactttgtgatgagttttctttggtcaattcttagctagatatgttaagatagttagttaagcaaatcgaaattgctagcttttccatgctttcttaaacatgattcttcagatttggttggttcttttttttcctttttgtggagacgtgctgttcttgcatcttatccttcttgattcatctacccatctggttctttgagctttctttttcgcttcttcccttcattatttcgagcaatctctgcacatctgaaagttttgtttcttgagactacttttgctagatcttgtttactcgatcactctatacttgcatctaggctcctttctaaataggcgatgattgagctttgcttatgtcaaatgatgggatagatattgtcccagtctccaaatttgatccatatccgccaagtctttcatcatctttttctttcttttttatgagcaaaaatcatctttttctttcaaagttcagcttttttctcttgttttacccctctttagctatagctggtttcttattccttttggatttacatgtataaaacatgcttgaatttgttagatcgatcactttatacacatactatgtgaatcacgatctcagatctctcagtatagttgaattcattaatttcttagatcgatcagcgtgtgatgtagtactgtaaatcactactagatctttcatcagtctcttttctgcatctatcaatttctcatgcaagttttagttgtttctttaatccggtctctctctcttttttaatcagctgagagtttgtgctgttctttaatcattaccagatctttcatcagtactctctcttctgcatctatcaaacttctcatgcaatgtttttgctgttctttgatctgatctctggtctccttttttgttgatcagttgagagcaagaagacatggggaggggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgaccttctgcaagcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcgatgccgaggtggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaacaacaagtatgtacttgctgtaaatatattggcttaattttgtactcagttcttgaaactaacttgctgattgctttgtttcccttcgtgtcatttcatgctcagcgtgcttgttgtgttgctttatttgtggctaatagtttgttattgagtaaaagtttagttgtggttaaaactgactcttggtaaatattttagaatgagtttaatattatacacattcttagatgatatgtgaattacttaactcaaggtgtgaaatgatttaggaaaaatgttagagtttatcataaaaactcatcaagatgtatatgtttgctcatcagctagctgtaagattaatgctgaaaatgttgtcctgtttagttacttgaaaaaggactattctgttctaattttcttagtcttatggtcagaaggctttactaaagtccatttatatatcctgcttgctaaattgattttgctggaaagaattaaccatgtatgcatggactttaatttcatctgtgcatgtaacaagacttgcttacttttttcagttatcatctactcagattacgaaataaaattgtaagatttatttcaaactatatgcatggtactatatatggtgatttgtcatgcatgcatgattatattgtttttgtatctaaataaagttactctcttaacctccatggaaaattccttagctattgctcatcattttcaaagtgagatgtgtgaattagatatgtacacacatattaaggggaggctatttgaaagatacattagaatccccttccaattcattcatgcatgcagtcaaataattatttaaagtttgcaaagtctcattgtttttatacatgtcaaattcatttgcaatctctctcgagtacatgtacatgagtatgcatgcatgcaaactttaaataatatatatcagtgctatcagtacttgagcagctagcaaagccactgccatcttttatcatattttattctccacagttcacacaacacacatcatatcatgcacagcaaggaagctcagtctcctgtcaatgttgtatgttcagtagatagttcaccctagaaactagctgtcaagagtttccttttccttgcttctccatacaccgatacacatatagacaccatggacatgcatgagaagaacttgcaccaagctagaaactgcagcaacgtcctcccatattcgctgtgtttgctcttctccggtgcaaagttgtgcatcagttaataagccaatggccatccatctgaccatctctctttctctctagctcgtgtatactcatttcattccgttcttgtgttcacttcaacacagttcttgcagctagagacagcatgcattccaatggctacctttcttctgcacaattttatgctgaagtaattaaacgcttgctcctcacatgcattatttctgcattcatgacatgtatagtcatgtgtgttgcatttcttctcttgttggcatatatgaacacactacattaccatgcatgcacaattatcagtatttatgttgtagtgttgagagagtaccactcgactgatgggatatatactgcagtgtgaaggctacaattgacaggtacaagaaggcgcatgcttgtggctcaacttctggtgcacctctcatagaggtcaatgctcaggtaacccatatatatgttgctgctttgttaattaccttcttctattcattttgccttagtttcagttaaattaatttggtgactattctaaaaccaaggcatattcatacatataaagtgagagcatatagatgccttgcattttaagtattttatatactttttgtggtaggtaattgactgctgcattatattaatttgttagtttcatcagggtatggcttgatctttgtgcttatatacattcatgtgttatagctatacagcatcaatctttacgacaagattgaattcataattaatgtagtatgtgaaccacttggagattgcctaatgcctagtctgcaattctgcactgaagttctccatatatttgtctttctctgagtttaagagtatacttttcttagaaactgtaagtgtacccttttgtggctagtggcttgcaatttaaagttagtgactgaagagaacaaacaaaattcacaaaataaacttcaatgtaaaagcatgaatgcagtcattctgttgcactacaattaaggttactgttactttttttttttgctgatcaattagagctacatgataaacgtaattaaatctgatcgatcgtcttgttaattgtcttgtctgaagcaatactaccagcaggagtctgccaaactgcgccaccagattcagatgctgcaaaacaccaacaagtaagtgcctaatactaatacacaatttttatatctgccattcaagaaacacatgtgtatatatcgatgataatattgaaaagagattactttacagaatcaatgtgatgacctggaaatacctattttcgtttggtttgttttcctatgtgaaaggcacctggttggcgataatgtgagcaacctgtcactgaaggagctgaagcaacttgaaagccgcctggagaaaggcatttcaaagatcagagccaggaaggtaaacaactatatataaaataccattttcacatgaacattcaattaccaacctcatggtgtcacctttagaacaaaatctcagtgctgttagatatatatgatcaccttgatttactttgtttgaacaattcttcagtttctgatgcaatgttaacttactaagtggccttaaaaatgtacaaattaactgttaatccttatttgtttaattttatctcagaatgaactgctggcttcagagatcaattacatggccaaaagggtatgtgtgttactagaattgcatcttacatacaattgtacatactgatcaatgattgcaaactcctttcttaatcctctattctttttacctgattgcataattcttgttagcattactcatttgcaatgttcttgtcatgatttcaggagattgagcttcagaacgacaacatggacctcagaaccaaggtaaatacatatcaggtgactgcaagaaatcagaaccaacttccaatttcttgtttgcaaatcagagattaattagctagctatttgtttaaattaatttgaacaaatagctagctaattaatctataaagcttgacgaaaagaacaatatatctctacatcaacgacacatctatctctactatacgttgatgagagatcatgtgcacacttgcagattgctgaggaggagcagcagctgcagcaggtgacggtggcccggtcggccgccatggagctgcaggctgcggcggcggcgcagcagcagcagcagaatccgttcgcggtggcggcggcgcagctggacatgaagtgcttcttcccgttgaacctgttcgaggcggcggcgcaggtgcaggccgtggcggcgcagcgccagcagatcatccccaccgagctcaacctcggctaccaccaccaccttgccattcccggcgccgccgccgccgacgcgccgcctcctcacttctgaacctcatgaacttcattctgcaccggcctgctgccatggatatgatgatcagctcatcttctatatcttatgctgttatgcagacagacactactgatgtggctatatatatagtatttgtgtgctgctgcattttgttaatcccttataaattgctacttaattatctcatggagaattggagagaccaaatgggcagagctagctagttagctgtgcccaattaagaagctaaatctatcagaagtgtgtactgatgagtgatgagtatttttcttcatttgggatcaaattaaactaagtaaaacatatatatttgacttatgttttacgtgc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072917.1 RefSeq:Os12g0207000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 12]]
[[Category:Chromosome 12]]

@@ Line 1: / Line 1: @@
-The rice gene Os12g0207000 was reported as '''''OsMADS13''''' in 2006<ref name="ref1" /> by researchers from Italy, The Netherlands and Korea.
+The rice '''''Os12g0207000''''' was reported as '''''OsMADS13''''' in 2007 <ref name="ref1" /> by researchers from India.
 ==Annotated Information==
 ===Gene Symbol===
-*'''''Os12g0207000 <=> OsMADS13, MAF1, RMADS206
+*'''''Os12g0207000''''' '''''<=>''''' '''''OsMADS13'''''
 ===Function===
-* '''''OsMADS13''''' controls ovule identity. It is the rice ortholog of '''''STK''''', '''''FBP7''''', and '''''FBP11'''''.
+* The MADS-box family members, identified initially as floral homeotic genes, are one of the most extensively studied transcription factor genes in plants.
-* '''''OsMADS13''''' also has a function in floral meristem determinacy.
+===Evolution===
-===Mutation===
+* The MADS domain binds to DNA sequences of high similarity to the motif CC[A/T]6GG termed the CArG-box.
-* The '''''osmads13''''' mutant is female sterile and that ovules are converted into carpelloid structures. Furthermore, making carpels inside carpels, the '''''osmads13''''' flower is indeterminate.
+* The MADS-box family has been divided into two main groups. The type I consists of ARG80/SRF-like genes of animals and fungi, also designated as M-type genes in plants, and type II contains MEF2-like genes of animals and yeast as well as MIKC-type genes of plants.
-===Expression ===
+* It is proposed that an ancestral duplication before the divergence of plants and animals gave rise to these groups
-* The expression of '''''OsMADS13''''' restricted to ovules.
+* The length of the MADS-box reported by various researchers varies somewhat, but typical lengths are in the range of 168 to 180 base pairs, i.e. the encoded MADS domain has a length of 56 to 60 amino acids.
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
-*Dipartimento di Scienze Biomolecolari e Biotecnologie, Universita` degli Studi di Milano, Via Celoria 26, 20133 Milan, Italy,
+* Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, Benito Juarez Road, New Delhi 110 021, India
-*Dipartimento di Biologia, Universita` degli Studi di Milano, Via Celoria 26, 20133 Milan, Italy,
+* Division of Genetics, Indian Agricultural Research Institute, New Delhi-110 012, India
-*Institute of Biology, Leiden University, Wassenaarseweg 64, 2333 AL Leiden, The Netherlands, and
 ==References==
 <references>
 * <ref name="ref1">
-Dreni L, Jacchia S, Fornara F, Fornari M, Ouwerkerk PB, An G, Colombo L, Kater
+Arora R, Agarwal P, Ray S, Singh AK, Singh VP, Tyagi AK, Kapoor S. MADS-box
-MM. The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice. Plant
+gene family in rice: genome-wide identification, organization and expression
-J. 2007 Nov;52(4):690-9. PubMed PMID: 17877710.
+profiling during reproductive development and stress. BMC Genomics. 2007 Jul
 </ref>
 </references>
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]]

@@ Line 6: / Line 6: @@
 ===Function===
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+* '''''OsMADS13''''' controls ovule identity. It is the rice ortholog of '''''STK''''', '''''FBP7''''', and '''''FBP11'''''.
 ===Mutation===
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+* The '''''osmads13''''' mutant is female sterile and that ovules are converted into carpelloid structures. Furthermore, making carpels inside carpels, the '''''osmads13''''' flower is indeterminate.
 ===Expression ===
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+* The expression of '''''OsMADS13''''' restricted to ovules.
 ===Evolution===

@@ Line 1: / Line 1: @@
-The rice gene  was reported as '''''''''' in 20<ref name="ref1" /> by researchers from China and Japan.
+The rice gene Os12g0207000 was reported as '''''OsMADS13''''' in 2006<ref name="ref1" /> by researchers from Italy, The Netherlands and Korea.
 ==Annotated Information==
 ===Gene Symbol===
-*''''' <=>
+*'''''Os12g0207000 <=> OsMADS13, MAF1, RMADS206
 ===Function===
@@ Line 19: / Line 19: @@
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
+*Dipartimento di Scienze Biomolecolari e Biotecnologie, Universita` degli Studi di Milano, Via Celoria 26, 20133 Milan, Italy,
 ==References==
 <references>
 * <ref name="ref1">
 </ref>

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice gene  was reported as '''''''''' in 20<ref name="ref1" /> by researchers from China and Japan.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
 ===Evolution===
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]]

@@ Line 1: / Line 1: @@
-{{JaponicaGene|
+Please input one-sentence summary here.
-  ORGANISM  Oryza sativa Japonica Group
+==Annotated Information==
-            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
+===Function===
-            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
+Please input function information here.
-            clade; Ehrhartoideae; Oryzeae; Oryza.
+===Expression===
-Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
+Please input expression information here.
-AP = Chromosome 12:5583799..5589341|
-CDS = 5585225..5585409,5586995..5587079,5587719..5587783,5587940..5588039,5588262..5588303<br>,5588453..5588494,5588712..5589005|
+===Evolution===
-GCID = <gbrowseImage1>
+Please input evolution information here.
-name=NC_008405:5583799..5589341
-source=RiceChromosome12
+You can also add sub-section(s) at will.
-preset=GeneLocation
-</gbrowseImage1>|
+==Labs working on this gene==
-GSID = <gbrowseImage2>
+Please input related labs here.
-name=NC_008405:5583799..5589341
-source=RiceChromosome12
+==References==
-preset=GeneLocation
+Please input cited references here.
-</gbrowseImage2>|
-CDNA = <cdnaseq>atggggaggggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgaccttctgcaagcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcgatgccgaggtggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaacaacaatgtgaaggctacaattgacaggtacaagaaggcgcatgcttgtggctcaacttctggtgcacctctcatagaggtcaatgctcagcaatactaccagcaggagtctgccaaactgcgccaccagattcagatgctgcaaaacaccaacaagcacctggttggcgataatgtgagcaacctgtcactgaaggagctgaagcaacttgaaagccgcctggagaaaggcatttcaaagatcagagccaggaagaatgaactgctggcttcagagatcaattacatggccaaaagggagattgagcttcagaacgacaacatggacctcagaaccaagattgctgaggaggagcagcagctgcagcaggtgacggtggcccggtcggccgccatggagctgcaggctgcggcggcggcgcagcagcagcagcagaatccgttcgcggtggcggcggcgcagctggacatgaagtgcttcttcccgttgaacctgttcgaggcggcggcgcaggtgcaggccgtggcggcgcagcgccagcagatcatccccaccgagctcaacctcggctaccaccaccaccttgccattcccggcgccgccgccgccgacgcgccgcctcctcacttctga</cdnaseq>|
+==Structured Information==
-AA = <aaseq>MGRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVA                     LIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRH                     QIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKRE                     IELQNDNMDLRTKIAEEEQQLQQVTVARSAAMELQAAAAAQQQQQNPFAVAAAQLDMK                     CFFPLNLFEAAAQVQAVAAQRQQIIPTELNLGYHHHLAIPGAAAADAPPPHF</aaseq>|
+     [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]]