Os12g0506800 - Revision history

Liman: /* Annotated Information */

2016-11-23T08:10:53Z

‎Annotated Information

Liman at 08:08, 23 November 2016

2016-11-23T08:08:14Z

Liman at 07:58, 23 November 2016

2016-11-23T07:58:47Z

Liman at 13:59, 15 October 2016

2016-10-15T13:59:42Z

192.168.72.52 at 03:44, 15 May 2015

2015-05-15T03:44:30Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os12g0506800| Description = Autophagocytosis associated protein, C-terminal domain containing protein| Version = NM_001190040.1 GI:297729210 Gene..."

2012-06-21T10:31:16Z

Created page with "{{JaponicaGene| GeneName = Os12g0506800| Description = Autophagocytosis associated protein, C-terminal domain containing protein| Version = NM_001190040.1 GI:297729210 Gene..."

New page

{{JaponicaGene|
GeneName = Os12g0506800|
Description = Autophagocytosis associated protein, C-terminal domain containing protein|
Version = NM_001190040.1 GI:297729210 GeneID:9267420|
Length = 2900 bp|
Definition = Oryza sativa Japonica Group Os12g0506800, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
AP = Chromosome 12:19585483..19588382|
CDS = 19587191..19587218,19587309..19587509,19587951..19587976|
GCID = <gbrowseImage1>
name=NC_008405:19585483..19588382
source=RiceChromosome12
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008405:19585483..19588382
source=RiceChromosome12
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atcgaagtggacatttattactcgggagttgaactgtgcttgcaccccctgcaggagcatccccattttagtaggccatggttcactttgcatccctgtggaaccagtgactgtatgaagttacttcttgaaggagtggaaaacaaggatcaacatgtgcaatacttaccggcatggctatctgtggttggccaggcagtaggactgaaaatcccacttgagctttatgcttctggactgaaaacacaggagtag</cdnaseq>|
AA = <aaseq>IEVDIYYSGVELCLHPLQEHPHFSRPWFTLHPCGTSDCMKLLLE GVENKDQHVQYLPAWLSVVGQAVGLKIPLELYASGLKTQE</aaseq>|
DNA = <dnaseqindica>1709..1736#1827..2027#2469..2494#gaaccctgtttagaccgctaataacggttttagtccctgacgagctcttcctcctcctccgacgccgccgccgccgccgccgccgccacgccgctcgccggcggcccctcgccatcgccgcctctcgttagctccccccccccggcgccgacgccggctttggcctctgtggctcgtgcccttccaggctccactgctctccgcccctcggcttgctctgcgccgcgcgccgcctccctcaactctcgccgtctccgcacgccctgctcggctactcgccgccggccgcggcggtagtcaagatcgaggtaataaatccctggattgaatccccttctcaaatcccccaatccgttccccatttttttttgttctgaatcgatcactcaatcaactgtagctgaacttaataataggcactagtagacctgttcatcaagatcatttttcaatgtgttcgggcttctttttttaggagattaacacaatattttaactcttgcattcataactcaccatagaaaattcaggttggactcctactgcaatgtacgcgtatggtattgttagtttggtactttggtttggatctggaaagcaattaaaatctgtacagattaatttgtgctgtttttttctttttttggcggcatggtgctatcaacttttaatctcatgactaacaatattttctgtcaatacgtagccatcaaatcctgtgtttgccactggcattagatttggtggttttgtgatgggaggctcctcaattggggagggaactctgtctctcggtgacttcgttgcgtctgcaaaggccctgattgagaagtggaaggtgattgatgtagaagattctcttcctgattggcaatggaaaccgtgtggcaagacgggggttccatctgaggttgtgctatcagatgcatgagcattactctctttttccttttttcagattaattttacttaaaagatggcgaatgccgatatgcttgcttgtcctttatgcaggaagagggctacctagctctcgaaggagtataccgcaatcctggaggaaggcatgttagtatcgtcctcgtgtacttacatgtattacaagtaatatgagcttccaaattagtgttgacttgaaattttcctctaggaacaaattggggatagcagtaatttcgatgatgcggacattgtcagcgatgatgcttgggtaacttttcagtacacattgttcattttatgtttctgctacctgcttattgatggtgcctaggtactttctcttaccctctgcaatttgcatatattcggaatatttttcctataagagaagataccaaatagctggcataacgcagtcatttgaattgataacttactcagaaacaactgaaataacttttgatctctaaattctcatatgttcaatactaacatttatgatttccttctctttgcaggcccagagctctagtgagagtgttcatatttatgattaccatgttgtctatagtttttcttacaaggttccagtgctatactttcagggtcatcaggctggtatgcatattacagaacaaaagtgaatatgtcattcctttagtgttctgttgacagacatctccaacttattcttaggtggccagctgctaactctagatgagataaaagaggaccttccttctcactcacttaaattattaggtgaatcgaagtggacatttattactcgggaggtacaagtggttatacacttcccttgattgatatattctgtgtaccttttgttggaaagttttatactccctaacacttgttgtctatagttgaactgtgcttgcaccccctgcaggagcatccccattttagtaggccatggttcactttgcatccctgtggaaccagtgactgtatgaagttacttcttgaaggagtggaaaacaaggatcaacatgtgcaatacttaccggcatggctatctgtggttggccaggcagtaggactgaaaatcccacttgagctttatggtaatctataacttcaccctttttcagtatataatactaagggtcctgtactgtttaacttgacatggcatgctgctttcatgagctccatgagacaatttgttccaaaatacagagagaactactaattgattttcggtcattcaagcaccctgcccaatctgaatctttgaaagcactgataaggcttggacttgaccttctgatatgaagtgctcttgaaagatacctcaggattcgttttatttacccactagtgagtgtgatataggagattgcttgtcgaaattggcattttgttggctgcataagctgtatgcctatttcacaattcacaggccgatggattgtgaaatactgaagggatccaacaatgctcctttacctgtttacttcagaagttcatattcagctaattgtgtgccttgtgttttgtgacagcttctggactgaaaacacaggagtagcaattgcttgccaatttgccatttggctcttgcaagttcgtcagcaacatatctattttgcgcaaatgccaatgcttatgatcaaactgtactgcatctggtaaggctcatatctggatcttccattcctctttacgttttgtttgggaaatggagtccatgtttcatctgcagagttatacatgcaatcaagtaatacacataacattattcagagatgcatcatgtctcctggaaacctggaaacaactgaggatcaacttcctagaagtaactgaagatcatcaactggcctactaatctttgttcttagtgctagatcatatcaatttagtatagaagctaaaagagaaccctggttccaaattgttattatgagaactagaaaataatcctatcaaaggcc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001190040.1 RefSeq:Os12g0506800]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 12]]
[[Category:Chromosome 12]]

@@ Line 9: / Line 9: @@
 ===Mutation===
-[[File:Os12g0506800-1.png|right|thumb|400px|'''Fig. 6. Effect of high salt or methyl viologen on WT and mutants.''' '' <ref name="ref1" />.'']]
+[[File:Os12g0506800-1.png|right|thumb|300px|'''Fig. 6. Effect of high salt or methyl viologen on WT and mutants.''' '' <ref name="ref1" />.'']]
 * The researchers identified T-DNA insertional mutants in that gene. Those '''''osatg10b''''' mutants were sensitive to treatments with high salt and methyl viologen (MV). Monodansylcadaverine-staining experiments showed that the number of autophagosomes was significantly decreased in the mutants compared with the WT. Furthermore, the amount of oxidized proteins increased in MV-treated mutant seedlings.
@@ Line 16: / Line 16: @@
 ===Sublocalization===
 * To locate it within a cell, OsATG10b protein was fused to the Nterminal region of sGFP and introduced into protoplasts isolated from Oc cells. We found that this fusion protein was localized in the cytosol (Fig. 3A), which was merged with that of mRFP (Figs. 3B and 3C).
 ===Evolution===
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
 * National Research Laboratory of Plant Functional Genomics, POSTECH Biotech Center, Division of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang 790-784, Korea,

@@ Line 1: / Line 1: @@
-The rice gene Os12g0506800 was reported as '''''Atg10b''''' in 2009<ref name="ref1" /> by researchers from Korea and Japan.
+The rice gene Os12g0506800 was reported as '''''OsAtg10b''''' in 2009<ref name="ref1" /> by researchers from Korea and Japan.
 ==Annotated Information==
@@ Line 6: / Line 6: @@
 ===Function===
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+* '''''OsATG10b''''' plays an important role in the survival of rice cells against oxidative stresses.
 ===Mutation===
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+[[File:Os12g0506800-1.png|right|thumb|400px|'''Fig. 6. Effect of high salt or methyl viologen on WT and mutants.''' '' <ref name="ref1" />.'']]
 ===Expression ===
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+* GUS assay indicated that '''''OsAtg10b''''' was highly expressed in the mesophyll cells and vascular tissue of younger leaves, but its level of expression decreased in older leaves.
 ===Evolution===

@@ Line 1: / Line 1: @@
-The rice gene  was reported as '''''''''' in 20<ref name="ref1" /> by researchers from China and Japan.
+The rice gene Os12g0506800 was reported as '''''Atg10b''''' in 2009<ref name="ref1" /> by researchers from Korea and Japan.
 ==Annotated Information==
 ===Gene Symbol===
-*''''' <=>
+*'''''Os12g0506800 <=> OsATG10b, Atg10b
 ===Function===
@@ Line 19: / Line 19: @@
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
+* National Research Laboratory of Plant Functional Genomics, POSTECH Biotech Center, Division of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang 790-784, Korea,
 ==References==
 <references>
 * <ref name="ref1">
 </ref>

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice gene  was reported as '''''''''' in 20<ref name="ref1" /> by researchers from China and Japan.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
 ===Evolution===
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]]

@@ Line 1: / Line 1: @@
-{{JaponicaGene|
+Please input one-sentence summary here.
-  ORGANISM  Oryza sativa Japonica Group
+==Annotated Information==
-            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
+===Function===
-            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
+Please input function information here.
-            clade; Ehrhartoideae; Oryzeae; Oryza.
+===Expression===
-Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
+Please input expression information here.
-AP = Chromosome 12:19585483..19588382|
-CDS = 19587191..19587218,19587309..19587509,19587951..19587976|
+===Evolution===
-GCID = <gbrowseImage1>
+Please input evolution information here.
-name=NC_008405:19585483..19588382
-source=RiceChromosome12
+You can also add sub-section(s) at will.
-preset=GeneLocation
-</gbrowseImage1>|
+==Labs working on this gene==
-GSID = <gbrowseImage2>
+Please input related labs here.
-name=NC_008405:19585483..19588382
-source=RiceChromosome12
+==References==
-preset=GeneLocation
+Please input cited references here.
-</gbrowseImage2>|
-CDNA = <cdnaseq>atcgaagtggacatttattactcgggagttgaactgtgcttgcaccccctgcaggagcatccccattttagtaggccatggttcactttgcatccctgtggaaccagtgactgtatgaagttacttcttgaaggagtggaaaacaaggatcaacatgtgcaatacttaccggcatggctatctgtggttggccaggcagtaggactgaaaatcccacttgagctttatgcttctggactgaaaacacaggagtag</cdnaseq>|
+==Structured Information==
-AA = <aaseq>IEVDIYYSGVELCLHPLQEHPHFSRPWFTLHPCGTSDCMKLLLE                     GVENKDQHVQYLPAWLSVVGQAVGLKIPLELYASGLKTQE</aaseq>|
+     [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]]